Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015466

Physical Location & Seq

Genomic Coordinates Forward (+)

7120577 .. 7122934

Gene Structure 2358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTCCGTACAATATTCCAAACCGTCCCCCTTCCCCTCTCTTCCCCTTCTCTCTCTCTGCTCGTCTTTTCTGTCAAGCAAAACTCTCCGTGGAGAAATGGGGGCTGGGCGCGAGGTCCAAAGCTCGCTGGATGGACTGCGGGACAAGAACGTGATGCAGCTGAAGAAACTCAACACTGCCCTCTTCCCAGTCCGCTACAACGACAAGTACTACGCCGATGCCCTCGCTTCCGGCGATTTCACCAAGCTAGCATATTTCAGTGATATATGTGTTGGTGCAATTGCATGCCGGCTTGAGAAAAAGGAAAATGGAGCTGTCCGCGTGTACATCATGACATTGGGAGTTTTAGCACCATACCGTGGGCTAGGCATTGGCAAAAAACTGTTGAACCATTCTCTTGATCTATGCGCCAAGCAAAATATTTCAGAAATATACTTGCATGTTCAGACAAACAATGAGGACGCCATAAACTTCTACAAGAAATTTGGGTTTGAAATCACGGAAACCATCCAGAATTATTACACGAACATCACCCCTCCAGACTGCTACGTTCTTACCAAGTATATCACTCAGACAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022402 GO:0031365 GO:0034085 GO:0034087 GO:0034212 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051276 GO:0051604 GO:0052858 GO:0061733 GO:0070601 GO:0071704 GO:0071840 GO:0071962 GO:0098813 GO:0140014 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

195

Amino Acids

21.8

Weight (kDa)

9.09

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	57 - 164	1.4e-18	Acetyltransferase (GNAT) family
Acetyltransf_10	PF13673	69 - 169	7.9e-11	Acetyltransferase (GNAT) domain
Acetyltransf_4	PF13420	87 - 174	1.7e-06	Acetyltransferase (GNAT) domain
Acetyltransf_7	PF13508	88 - 165	3.2e-12	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11340
fragaria_vesca	FvH4_2g29780
malus_domestica	MD15G1118400.v1.1
prunus_persica	Prupe.1G471800_v2.0.a1 Prupe.1G471800_v2.0.a1
pyrus_communis	pycom15g10660
rosa_chinensis	RchiOBHm_Chr6g0298801
rosa_laevigata	RLG00000011484
rosa_multiflora	Rmu_sc0033401.1_g000001 Rmu_ssc0000397.1_g000017
rosa_roxburghii	Rroxscaffold_7G00169320
rosa_rugosa	Rorug06G0283000
rosa_samantha	Rh6BG402400 Rh6CG408200 Rh6DG395000
rosa_wichuraiana	Rw6G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccII	CGCG	2 cut(s)	111, 321
AciI	CCGC	3 cut(s)	139, 193, 319
AcsI	RAATTY	1 cut(s)	482
AcuI	CTGAAG	1 cut(s)	182
AcyI	GRCGYC	1 cut(s)	462
AfaI	GTAC	3 cut(s)	9, 209, 326
AfiI	CCNNNNNNNGG	1 cut(s)	359
AgsI	TTSAA	2 cut(s)	388, 494
AluBI	AGCT	4 cut(s)	123, 160, 247, 314
AluI	AGCT	4 cut(s)	123, 160, 247, 314
ApeKI	GCWGC	1 cut(s)	157
ApoI	RAATTY	1 cut(s)	482
AspLEI	GCGC	2 cut(s)	111, 410
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	232, 523
AsuNHI	GCTAGC	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	2 cut(s)	125, 515
BfaI	CTAG	2 cut(s)	248, 365
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
BmcAI	AGTACT	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	2 cut(s)	144, 208
BmtI	GCTAGC	1 cut(s)	251
BmuI	ACTGGG	1 cut(s)	182
BpmI	CTGGAG	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	314
BsaHI	GRCGYC	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	88, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse118I	RCCGGY	1 cut(s)	288
Bse1I	ACTGG	1 cut(s)	188
BseDI	CCNNGG	2 cut(s)	88, 358
BseGI	GGATG	2 cut(s)	136, 507
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	584
BseNI	ACTGG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	169
BseYI	CCCAGC	1 cut(s)	104
Bsh1236I	CGCG	2 cut(s)	111, 321
BsiSI	CCGG	2 cut(s)	231, 289
BslFI	GGGAC	2 cut(s)	10, 155
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmFI	GGGAC	2 cut(s)	10, 155
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	400
BspACI	CCGC	3 cut(s)	139, 193, 319
BspCNI	CTCAG	1 cut(s)	583
BspFNI	CGCG	2 cut(s)	111, 321
BspHI	TCATGA	1 cut(s)	330
BspOI	GCTAGC	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	288
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	88, 358
BssMI	GATC	1 cut(s)	400
BssNI	GRCGYC	1 cut(s)	462
Bst4CI	ACNGT	3 cut(s)	24, 359, 384
Bst6I	CTCTTC	2 cut(s)	45, 188
BstACI	GRCGYC	1 cut(s)	462
BstAUI	TGTACA	1 cut(s)	324
BstC8I	GCNNGC	4 cut(s)	125, 249, 286, 290
BstDEI	CTNAG	1 cut(s)	570
BstDSI	CCRYGG	2 cut(s)	88, 358
BstF5I	GGATG	2 cut(s)	136, 507
BstFNI	CGCG	2 cut(s)	111, 321
BstHHI	GCGC	2 cut(s)	111, 410
BstKTI	GATC	1 cut(s)	403
BstMBI	GATC	1 cut(s)	400
BstNSI	RCATGY	2 cut(s)	288, 443
BstUI	CGCG	2 cut(s)	111, 321
BstV1I	GCAGC	1 cut(s)	169
BtgI	CCRYGG	2 cut(s)	88, 358
BtsCI	GGATG	2 cut(s)	136, 507
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	174, 265
Cac8I	GCNNGC	4 cut(s)	125, 249, 286, 290
CciI	TCATGA	1 cut(s)	330
CfoI	GCGC	2 cut(s)	111, 410
Cfr10I	RCCGGY	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	115
CseI	GACGC	1 cut(s)	470
Csp6I	GTAC	3 cut(s)	8, 208, 325
CviAII	CATG	3 cut(s)	285, 331, 440
CviJI	RGCY	7 cut(s)	104, 123, 160, 247, 292, 314, 364
CviKI_1	RGCY	7 cut(s)	104, 123, 160, 247, 292, 314, 364
CviQI	GTAC	3 cut(s)	8, 208, 325
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
Eam1104I	CTCTTC	2 cut(s)	45, 188
EarI	CTCTTC	2 cut(s)	45, 188
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	182
FaeI	CATG	3 cut(s)	288, 334, 443
FaqI	GGGAC	2 cut(s)	10, 155
FatI	CATG	3 cut(s)	284, 330, 439
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	2 cut(s)	143, 494
Fsp4HI	GCNGC	1 cut(s)	158
FspBI	CTAG	2 cut(s)	248, 365
GlaI	GCGC	2 cut(s)	110, 409
GluI	GCNGC	1 cut(s)	158
GsaI	CCCAGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	522
HapII	CCGG	2 cut(s)	231, 289
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	2 cut(s)	111, 410
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	3 cut(s)	288, 334, 443
Hin6I	GCGC	2 cut(s)	109, 408
HinP1I	GCGC	2 cut(s)	109, 408
HpaII	CCGG	2 cut(s)	231, 289
HphI	GGTGA	2 cut(s)	232, 523
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	3 cut(s)	427, 447, 573
Hpy188III	TCNNGA	4 cut(s)	331, 398, 511, 539
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	40, 56
HpyCH4III	ACNGT	3 cut(s)	24, 359, 384
HpyCH4IV	ACGT	2 cut(s)	150, 549
HpyCH4V	TGCA	4 cut(s)	157, 278, 284, 439
HpyF3I	CTNAG	1 cut(s)	570
HpySE526I	ACGT	2 cut(s)	150, 549
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	3 cut(s)	288, 334, 443
HspAI	GCGC	2 cut(s)	109, 408
KroI	GCCGGC	1 cut(s)	288
KroNI	GCCGGC	1 cut(s)	290
Kzo9I	GATC	1 cut(s)	400
LmnI	GCTCC	1 cut(s)	311
LpnPI	CCDG	7 cut(s)	90, 113, 201, 244, 302, 524, 552
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	2 cut(s)	144, 208
MaeI	CTAG	2 cut(s)	248, 365
MaeII	ACGT	2 cut(s)	150, 549
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MboII	GAAGA	3 cut(s)	32, 175, 175
MfeI	CAATTG	1 cut(s)	279
MluCI	AATT	3 cut(s)	279, 482, 514
MnlI	CCTC	6 cut(s)	46, 106, 191, 233, 451, 546
MroNI	GCCGGC	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	2 cut(s)	231, 289
MunI	CAATTG	1 cut(s)	279
MvnI	CGCG	2 cut(s)	111, 321
NaeI	GCCGGC	1 cut(s)	290
NdeII	GATC	1 cut(s)	400
NgoMIV	GCCGGC	1 cut(s)	288
NheI	GCTAGC	1 cut(s)	247
NlaIII	CATG	3 cut(s)	288, 334, 443
NspI	RCATGY	2 cut(s)	288, 443
PaeI	GCATGC	1 cut(s)	288
PagI	TCATGA	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PdiI	GCCGGC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	159
PspFI	CCCAGC	1 cut(s)	104
PspPI	GGNCC	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	160
RsaI	GTAC	3 cut(s)	9, 209, 326
RsaNI	GTAC	3 cut(s)	8, 208, 325
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	1 cut(s)	115
ScaI	AGTACT	1 cut(s)	209
SetI	ASST	7 cut(s)	117, 125, 153, 162, 249, 316, 552
SfaNI	GCATC	2 cut(s)	144, 208
SinI	GGWCC	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SphI	GCATGC	1 cut(s)	288
Sse9I	AATT	3 cut(s)	279, 482, 514
SsiI	CCGC	3 cut(s)	139, 193, 319
SspI	AATATT	2 cut(s)	14, 421
SspMI	CTAG	2 cut(s)	248, 365
TaaI	ACNGT	3 cut(s)	24, 359, 384
TaiI	ACGT	2 cut(s)	153, 552
TasI	AATT	3 cut(s)	279, 482, 514
TatI	WGTACW	2 cut(s)	207, 324
TscAI	CASTG	2 cut(s)	181, 265
TseI	GCWGC	1 cut(s)	157
TspGWI	ACGGA	2 cut(s)	77, 515
TspRI	CASTG	2 cut(s)	181, 265
Van91I	CCANNNNNTGG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	1 cut(s)	482
XceI	RCATGY	2 cut(s)	288, 443
XspI	CTAG	2 cut(s)	248, 365
ZrmI	AGTACT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.