Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014016

Physical Location & Seq

Genomic Coordinates Forward (+)

7255919 .. 7257295

Gene Structure 1377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCGTCGTTGCTGAAATCTTTGGTGGATCCAAGGACGAACTGGTTCGCCCGCCAGCACATGAAGGCCGTCTCCCAGCGCCTCCGCCATTACGGGCTTCGATACGACGATCTGTACGATCGATCGGACTACGATTTGGACATCAAGGAGGCTCTGAGTCGTCTGCCGAGGGAGATTGTGGACGCTCGTAACCAGCGTCTCAAGCGCGCCATGGACCTCTCCATGAAGCACGAGTACCTCCCCGACCATCTTCAGGCACAGCAAACACCATTCAGGAGCTACCTTCAGGAAATGCTGACTCTGGTGAAGAAGGAAAGAGCAGAGCGTGAGGCTTTGGGAGCTTTGCCACTCTATCAGCGCACCATTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0005773 GO:0005774 GO:0006091 GO:0006119 GO:0006122 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016043 GO:0016310 GO:0017004 GO:0017062 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022607 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033108 GO:0034551 GO:0034622 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045275 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0065003 GO:0070069 GO:0070469 GO:0071704 GO:0071840 GO:0072521 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

UCR_14kD

Protein Analysis

124

Amino Acids

14.7

Weight (kDa)

9.59

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCR_14kD	PF02271	14 - 110	1.4e-25	Ubiquinol-cytochrome C reductase complex 14kD subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32470 AT5G25450
fragaria_vesca	FvH4_2g29690
malus_domestica	MD08G1143000.v1.1 MD15G1119900.v1.1
prunus_persica	Prupe.1G472700_v2.0.a1
pyrus_communis	pycom08g12170 pycom15g10800
rosa_chinensis	RchiOBHm_Chr6g0298671
rosa_laevigata	RLG00000011493
rosa_multiflora	Rmu_sc0008099.1_g000004 Rmu_sc0008142.1_g000004
rosa_roxburghii	Rroxscaffold_7G00169410
rosa_rugosa	Rorug06G0282500
rosa_samantha	Rh6BG401500 Rh6CG407400
rosa_wichuraiana	Rw6G034420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	207
AciI	CCGC	2 cut(s)	52, 85
AclWI	GGATC	2 cut(s)	23, 36
AcuI	CTGAAG	2 cut(s)	236, 269
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	116, 236
AfiI	CCNNNNNNNGG	1 cut(s)	253
AluBI	AGCT	2 cut(s)	279, 341
AluI	AGCT	2 cut(s)	279, 341
Alw26I	GTCTC	2 cut(s)	76, 203
AlwI	GGATC	2 cut(s)	23, 36
AoxI	GGCC	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	44
AspLEI	GCGC	4 cut(s)	81, 207, 209, 360
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	316
AvaII	GGWCC	1 cut(s)	214
BamHI	GGATCC	1 cut(s)	28
BarI	GAAGNNNNNNTAC	2 cut(s)	218, 250
BauI	CACGAG	1 cut(s)	230
BccI	CCATC	1 cut(s)	255
BceAI	ACGGC	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	76, 203
BfoI	RGCGCY	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	185
Bsa29I	ATCGAT	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	32, 167, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	47
BseCI	ATCGAT	1 cut(s)	121
BseDI	CCNNGG	3 cut(s)	32, 167, 210
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	47
BsePI	GCGCGC	1 cut(s)	205
BseYI	CCCAGC	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	2 cut(s)	121, 125
BshFI	GGCC	1 cut(s)	68
BshVI	ATCGAT	1 cut(s)	121
BsiEI	CGRYCG	2 cut(s)	121, 125
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	2 cut(s)	76, 203
BsmBI	CGTCTC	2 cut(s)	76, 203
BsnI	GGCC	1 cut(s)	68
Bsp143I	GATC	4 cut(s)	28, 109, 118, 122
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	2 cut(s)	52, 85
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	147
BspDI	ATCGAT	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	2 cut(s)	23, 36
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	3 cut(s)	32, 167, 210
BssHII	GCGCGC	1 cut(s)	205
BssMI	GATC	4 cut(s)	28, 109, 118, 122
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	230
BssT1I	CCWWGG	2 cut(s)	32, 210
Bst2BI	CACGAG	1 cut(s)	230
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	52, 56, 207
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	210
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	4 cut(s)	81, 207, 209, 360
BstKTI	GATC	4 cut(s)	31, 112, 121, 125
BstMAI	GTCTC	2 cut(s)	76, 203
BstMBI	GATC	4 cut(s)	28, 109, 118, 122
BstMCI	CGRYCG	2 cut(s)	121, 125
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 338
BstUI	CGCG	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
Bsu15I	ATCGAT	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	68
BsuTUI	ATCGAT	1 cut(s)	121
BtgI	CCRYGG	1 cut(s)	210
Cac8I	GCNNGC	3 cut(s)	52, 56, 207
CfoI	GCGC	4 cut(s)	81, 207, 209, 360
Cfr13I	GGNCC	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	121
CseI	GACGC	2 cut(s)	185, 191
Csp6I	GTAC	2 cut(s)	115, 235
CviAII	CATG	3 cut(s)	61, 211, 223
CviJI	RGCY	6 cut(s)	68, 97, 152, 279, 332, 341
CviKI_1	RGCY	6 cut(s)	68, 97, 152, 279, 332, 341
CviQI	GTAC	2 cut(s)	115, 235
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	4 cut(s)	30, 111, 120, 124
DpnII	GATC	4 cut(s)	28, 109, 118, 122
EciI	GGCGGA	1 cut(s)	74
Eco130I	CCWWGG	2 cut(s)	32, 210
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	2 cut(s)	236, 269
EcoT14I	CCWWGG	2 cut(s)	32, 210
ErhI	CCWWGG	2 cut(s)	32, 210
Esp3I	CGTCTC	2 cut(s)	76, 203
FaeI	CATG	3 cut(s)	64, 214, 226
FaiI	YATR	4 cut(s)	62, 212, 224, 370
FatI	CATG	3 cut(s)	60, 210, 222
FauI	CCCGC	1 cut(s)	59
GlaI	GCGC	4 cut(s)	80, 206, 208, 359
GsaI	CCCAGC	1 cut(s)	79
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	68
HgaI	GACGC	2 cut(s)	185, 191
HhaI	GCGC	4 cut(s)	81, 207, 209, 360
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	64, 214, 226
Hin6I	GCGC	4 cut(s)	79, 205, 207, 358
HinP1I	GCGC	4 cut(s)	79, 205, 207, 358
HinfI	GANTC	2 cut(s)	157, 298
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	127, 156
Hpy188III	TCNNGA	2 cut(s)	274, 287
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	2 cut(s)	10, 110
HpyAV	CCTTC	3 cut(s)	58, 293, 304
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 338
HpyF3I	CTNAG	1 cut(s)	155
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	64, 214, 226
HspAI	GCGC	4 cut(s)	79, 205, 207, 358
Kzo9I	GATC	4 cut(s)	28, 109, 118, 122
LmnI	GCTCC	2 cut(s)	276, 338
LpnPI	CCDG	8 cut(s)	28, 68, 89, 206, 239, 259, 272, 287
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	4 cut(s)	30, 111, 120, 124
MboI	GATC	4 cut(s)	28, 109, 118, 122
MboII	GAAGA	2 cut(s)	242, 319
MflI	RGATCY	1 cut(s)	28
MlyI	GAGTC	2 cut(s)	166, 292
MnlI	CCTC	6 cut(s)	92, 142, 162, 227, 248, 322
MroXI	GAANNNNTTC	1 cut(s)	44
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	202, 338
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	4 cut(s)	28, 109, 118, 122
NlaIII	CATG	3 cut(s)	64, 214, 226
NlaIV	GGNNCC	1 cut(s)	30
NmeAIII	GCCGAG	1 cut(s)	192
PauI	GCGCGC	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 193
PdmI	GAANNNNTTC	1 cut(s)	44
Ple19I	CGATCG	2 cut(s)	121, 125
PleI	GAGTC	2 cut(s)	165, 292
PpsI	GAGTC	2 cut(s)	165, 292
PspFI	CCCAGC	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	28
PteI	GCGCGC	1 cut(s)	205
PvuI	CGATCG	2 cut(s)	121, 125
RsaI	GTAC	2 cut(s)	116, 236
RsaNI	GTAC	2 cut(s)	115, 235
Sau3AI	GATC	4 cut(s)	28, 109, 118, 122
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	2 cut(s)	166, 292
SetI	ASST	5 cut(s)	219, 240, 281, 285, 343
SinI	GGWCC	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SsiI	CCGC	2 cut(s)	52, 85
StyI	CCWWGG	2 cut(s)	32, 210
TaqI	TCGA	2 cut(s)	100, 121
TspDTI	ATGAA	2 cut(s)	77, 239
VpaK11BI	GGWCC	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.