pycom15g11470

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012970
Physical Location & Seq
Reverse (-)
7769037 .. 7771377
2341 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1041 bp
ATGCATTTGGACTGCAGGAGCTACACGGAAATGGAGAAAAAATTCAAAGTGTACGTGTACTCGGAGGGGGACCCACCGATGACCCACGACGGCCCATGCAAGGACATATATTCCATCGAAGGGCGGTTCATACACGAAATGGAGAATGGGGCAGCGGGCAGGAGGTTCAAGACCGAGAACCCGCAGAGGGCGCATGTTTACTTCATGCCCTTTAGCGTGACTTGGATGGTGAAATACCTATACAAGCCCTTAACCTACGACCTCACCCCTCTGAGGAACTTTGTGTCCGATTATGTAAGGATGGTTTCTGTGAGGCACCCCTTTTGGAATAGGACTCTTGGGGCGGACCACTTCATGCTCGCCTGTCATGATTGGGCACCCCGTGCGTCAGAAGGAAACCCACTTCTCTTCAACACATCAATCCGAGTCCTCTGCAACGCCAACACCTCCGAAGGCTTCAACCCTCAAAAGGACGTTTCCCTCCCTGAAATCCACCTCTACGGCGGCACAGTCTCCCCCAAGCTCATCTCACCGCCACCGCCCAACACCCTGCGTCCCTACCTTGCCTTCTTCGCCGGCGGCCTCCACGGCCCGATAAGGCCCATCCTCCTGGCTCACTGGAAAAACCGCGACAAAGACCTTCAAATTCATGAATACCTCCCCAAAGGCCTAGACTACGACTCTATGGTGCTCAAGTCCAAGTTTTGCCTGTGCCCTAGCGGGTATGAAGTGGCCAGCCCTAGAATTGTTGAGGCCATTTATGCCGAGTGCGTGCCGGTGATTCTATCGGAGCACTATGCGCTTCCGTTTAGCGACGTGCTGAGGTGGGAGGCGTTTTCGGTTAAGGTTGAGGTTTCGGAGATTTCGCGGCTGAAGGAGGTGCTGATGGGTGTTCCGGAGGAGAAGTATGGGAGGCTGGTGGAGAATTTGAGGGTTGTGAGGAAACATTTTGAGTTGAACCAACCGGCTAAGAGGTTTGATGTGTTTCATATGATACTGCACTCCGTTTGGCTTAGGAGAATTAACCTTAGAATTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

347

Amino Acids

40.1

Weight (kDa)

8.7

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 11 - 296 1.9e-56 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25310
fragaria_vesca FvH4_2g28831 FvH4_4g07691 FvH4_6g35481
malus_domestica MD15G1127300.v1.1
prunus_persica Prupe.1G483000_v2.0.a1
pyrus_communis pycom15g11470 pycom15g11480
rosa_chinensis RchiOBHm_Chr6g0297591
rosa_laevigata RLG00000011579
rosa_multiflora Rmu_ssc0000319.1_g000009
rosa_roxburghii Rroxscaffold_7G00170330
rosa_rugosa Rorug06G0274100
rosa_samantha Rh6AG384900 Rh6BG393000 Rh6CG398800 Rh6DG385400
rosa_wichuraiana Rw6G033530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 315, 376
AccII CGCG 2 cut(s) 630, 868
AccIII TCCGGA 1 cut(s) 895
AcoI YGGCCR 1 cut(s) 732
AcsI RAATTY 3 cut(s) 41, 645, 925
AcuI CTGAAG 1 cut(s) 893
AdeI CACNNNGTG 1 cut(s) 383
AfaI GTAC 2 cut(s) 53, 59
AfiI CCNNNNNNNGG 5 cut(s) 100, 120, 187, 273, 469
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 6 cut(s) 46, 169, 412, 460, 644, 958
AjiI CACGTC 1 cut(s) 817
AjnI CCWGG 1 cut(s) 609
AloI GAACNNNNNNTCC 2 cut(s) 269, 301
AluBI AGCT 2 cut(s) 21, 523
AluI AGCT 2 cut(s) 21, 523
Alw21I GWGCWC 2 cut(s) 693, 795
Alw26I GTCTC 1 cut(s) 517
Aor13HI TCCGGA 1 cut(s) 895
AoxI GGCC 7 cut(s) 91, 580, 589, 599, 667, 732, 753
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 3 cut(s) 41, 645, 925
Asp700I GAANNNNTTC 1 cut(s) 41
AspLEI GCGC 2 cut(s) 193, 802
AspS9I GGNCC 5 cut(s) 70, 92, 346, 590, 600
AsuHPI GGTGA 4 cut(s) 241, 256, 522, 790
AvaII GGWCC 2 cut(s) 70, 346
BaeGI GKGCMC 2 cut(s) 379, 716
BalI TGGCCA 1 cut(s) 734
BanI GGYRCC 2 cut(s) 315, 376
Bbv12I GWGCWC 2 cut(s) 693, 795
BbvCI CCTCAGC 1 cut(s) 821
BbvI GCAGC 1 cut(s) 164
BccI CCATC 5 cut(s) 122, 220, 295, 611, 880
BceAI ACGGC 3 cut(s) 106, 517, 604
BcgI CGANNNNNNTGC 2 cut(s) 414, 448
BciT130I CCWGG 1 cut(s) 611
BcoDI GTCTC 1 cut(s) 517
BfaI CTAG 4 cut(s) 671, 717, 741, 1039
BfmI CTRYAG 1 cut(s) 13
BglI GCCNNNNNGGC 1 cut(s) 588
BisI GCNGC 4 cut(s) 153, 505, 580, 869
BlsI GCNGC 4 cut(s) 154, 506, 581, 870
Bme1390I CCNGG 1 cut(s) 611
Bme18I GGWCC 2 cut(s) 70, 346
BmgBI CACGTC 1 cut(s) 817
BmgT120I GGNCC 5 cut(s) 70, 92, 346, 590, 600
BmiI GGNNCC 4 cut(s) 71, 72, 317, 378
BmrFI CCNGG 1 cut(s) 611
Bpu10I CCTNAGC 2 cut(s) 821, 1013
BpuEI CTTGAG 1 cut(s) 677
BsaAI YACGTR 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 586
BsaWI WCCGGW 1 cut(s) 895
BsaXI ACNNNNNCTCC 2 cut(s) 890, 920
Bsc4I CCNNNNNNNGG 5 cut(s) 100, 120, 187, 273, 469
Bse118I RCCGGY 3 cut(s) 575, 775, 964
Bse1I ACTGG 1 cut(s) 623
BseAI TCCGGA 1 cut(s) 895
BseBI CCWGG 1 cut(s) 611
BseDI CCNNGG 1 cut(s) 586
BseGI GGATG 3 cut(s) 231, 306, 603
BseLI CCNNNNNNNGG 5 cut(s) 100, 120, 187, 273, 469
BseMII CTCAG 2 cut(s) 263, 812
BseNI ACTGG 1 cut(s) 623
BseRI GAGGAG 1 cut(s) 914
BseSI GKGCMC 2 cut(s) 379, 716
BseXI GCAGC 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 983
Bsh1236I CGCG 2 cut(s) 630, 868
BshFI GGCC 7 cut(s) 93, 582, 591, 601, 669, 734, 755
BshNI GGYRCC 2 cut(s) 315, 376
BsiHKAI GWGCWC 2 cut(s) 693, 795
BsiSI CCGG 4 cut(s) 576, 776, 896, 965
BslFI GGGAC 2 cut(s) 83, 540
BslI CCNNNNNNNGG 5 cut(s) 100, 120, 187, 273, 469
BsmAI GTCTC 1 cut(s) 517
BsmFI GGGAC 2 cut(s) 83, 540
BsnI GGCC 7 cut(s) 93, 582, 591, 601, 669, 734, 755
Bsp1286I GDGCHC 4 cut(s) 379, 693, 716, 795
Bsp13I TCCGGA 1 cut(s) 895
BspANI GGCC 7 cut(s) 93, 582, 591, 601, 669, 734, 755
BspCNI CTCAG 2 cut(s) 264, 813
BspEI TCCGGA 1 cut(s) 895
BspFNI CGCG 2 cut(s) 630, 868
BspHI TCATGA 2 cut(s) 367, 649
BspLI GGNNCC 4 cut(s) 71, 72, 317, 378
BspMAI CTGCAG 1 cut(s) 17
BspT107I GGYRCC 2 cut(s) 315, 376
BsrFI RCCGGY 3 cut(s) 575, 775, 964
BsrI ACTGG 1 cut(s) 623
BssAI RCCGGY 3 cut(s) 575, 775, 964
BssECI CCNNGG 1 cut(s) 586
Bst2UI CCWGG 1 cut(s) 611
Bst4CI ACNGT 1 cut(s) 511
Bst6I CTCTTC 1 cut(s) 413
BstAPI GCANNNNNTGC 1 cut(s) 383
BstBAI YACGTR 1 cut(s) 55
BstC8I GCNNGC 5 cut(s) 157, 360, 577, 736, 773
BstDEI CTNAG 5 cut(s) 272, 821, 969, 1013, 1028
BstDSI CCRYGG 1 cut(s) 586
BstF5I GGATG 3 cut(s) 231, 306, 603
BstFNI CGCG 2 cut(s) 630, 868
BstHHI GCGC 2 cut(s) 193, 802
BstMAI GTCTC 1 cut(s) 517
BstMWI GCNNNNNNNGC 6 cut(s) 190, 383, 572, 588, 761, 799
BstNI CCWGG 1 cut(s) 611
BstNSI RCATGY 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 609
BstSFI CTRYAG 1 cut(s) 13
BstSLI GKGCMC 2 cut(s) 379, 716
BstUI CGCG 2 cut(s) 630, 868
BstV1I GCAGC 1 cut(s) 164
BstXI CCANNNNNNTGG 1 cut(s) 610
BsuRI GGCC 7 cut(s) 93, 582, 591, 601, 669, 734, 755
BtgI CCRYGG 1 cut(s) 586
BtrI CACGTC 1 cut(s) 817
BtsCI GGATG 3 cut(s) 231, 306, 603
BtsIMutI CAGTG 1 cut(s) 616
Cac8I GCNNGC 5 cut(s) 157, 360, 577, 736, 773
CciI TCATGA 2 cut(s) 367, 649
CfoI GCGC 2 cut(s) 193, 802
Cfr10I RCCGGY 3 cut(s) 575, 775, 964
Cfr13I GGNCC 5 cut(s) 70, 92, 346, 590, 600
CseI GACGC 2 cut(s) 375, 542
Csp6I GTAC 2 cut(s) 52, 58
CviAII CATG 6 cut(s) 96, 194, 205, 355, 368, 650
CviQI GTAC 2 cut(s) 52, 58
DdeI CTNAG 5 cut(s) 272, 821, 969, 1013, 1028
DraIII CACNNNGTG 1 cut(s) 383
EaeI YGGCCR 1 cut(s) 732
Eam1104I CTCTTC 1 cut(s) 413
EarI CTCTTC 1 cut(s) 413
EciI GGCGGA 1 cut(s) 359
Eco147I AGGCCT 1 cut(s) 669
Eco47I GGWCC 2 cut(s) 70, 346
Eco57I CTGAAG 1 cut(s) 893
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 609
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 6 cut(s) 99, 197, 208, 358, 371, 653
FaqI GGGAC 2 cut(s) 83, 540
FatI CATG 6 cut(s) 95, 193, 204, 354, 367, 649
FauI CCCGC 3 cut(s) 148, 189, 713
FauNDI CATATG 1 cut(s) 990
Fnu4HI GCNGC 4 cut(s) 153, 505, 580, 869
FokI GGATG 3 cut(s) 238, 313, 590
Fsp4HI GCNGC 4 cut(s) 153, 505, 580, 869
FspBI CTAG 4 cut(s) 671, 717, 741, 1039
GlaI GCGC 2 cut(s) 192, 801
GluI GCNGC 4 cut(s) 153, 505, 580, 869
HaeIII GGCC 7 cut(s) 93, 582, 591, 601, 669, 734, 755
HapII CCGG 4 cut(s) 576, 776, 896, 965
HgaI GACGC 2 cut(s) 375, 542
HhaI GCGC 2 cut(s) 193, 802
Hin1II CATG 6 cut(s) 99, 197, 208, 358, 371, 653
Hin6I GCGC 2 cut(s) 191, 800
HinP1I GCGC 2 cut(s) 191, 800
HinfI GANTC 4 cut(s) 334, 426, 680, 781
HpaII CCGG 4 cut(s) 576, 776, 896, 965
HphI GGTGA 4 cut(s) 241, 256, 522, 790
Hpy166II GTNNAC 3 cut(s) 52, 58, 199
Hpy188I TCNGA 8 cut(s) 64, 273, 289, 391, 425, 451, 790, 859
Hpy188III TCNNGA 4 cut(s) 169, 368, 650, 896
Hpy8I GTNNAC 3 cut(s) 52, 58, 199
Hpy99I CGWCG 2 cut(s) 92, 818
HpyAV CCTTC 6 cut(s) 113, 386, 446, 577, 650, 868
HpyCH4III ACNGT 1 cut(s) 511
HpyCH4IV ACGT 3 cut(s) 54, 474, 816
HpyCH4V TGCA 5 cut(s) 4, 15, 99, 435, 1000
HpyF10VI GCNNNNNNNGC 6 cut(s) 190, 383, 572, 588, 761, 799
HpyF3I CTNAG 5 cut(s) 272, 821, 969, 1013, 1028
HpySE526I ACGT 3 cut(s) 54, 474, 816
Hsp92II CATG 6 cut(s) 99, 197, 208, 358, 371, 653
HspAI GCGC 2 cut(s) 191, 800
KflI GGGWCCC 1 cut(s) 70
Kpn2I TCCGGA 1 cut(s) 895
KroI GCCGGC 1 cut(s) 575
KroNI GCCGGC 1 cut(s) 577
LmnI GCTCC 2 cut(s) 18, 790
Lsp1109I GCAGC 1 cut(s) 164
MaeI CTAG 4 cut(s) 671, 717, 741, 1039
MaeII ACGT 3 cut(s) 54, 474, 816
MaeIII GTNAC 1 cut(s) 217
MboII GAAGA 2 cut(s) 400, 562
MhlI GDGCHC 4 cut(s) 379, 693, 716, 795
MlsI TGGCCA 1 cut(s) 734
MluCI AATT 6 cut(s) 41, 645, 744, 925, 1020, 1032
MluNI TGGCCA 1 cut(s) 734
MlyI GAGTC 3 cut(s) 328, 435, 674
Mox20I TGGCCA 1 cut(s) 734
Mph1103I ATGCAT 1 cut(s) 6
MreI CGCCGGCG 1 cut(s) 575
MroI TCCGGA 1 cut(s) 895
MroNI GCCGGC 1 cut(s) 575
MroXI GAANNNNTTC 1 cut(s) 41
MscI TGGCCA 1 cut(s) 734
MseI TTAA 3 cut(s) 251, 843, 1023
MslI CAYNNNNRTG 1 cut(s) 29
Msp20I TGGCCA 1 cut(s) 734
MspA1I CMGCKG 1 cut(s) 155
MspI CCGG 4 cut(s) 576, 776, 896, 965
MspR9I CCNGG 1 cut(s) 611
MvaI CCWGG 1 cut(s) 611
MvnI CGCG 2 cut(s) 630, 868
MwoI GCNNNNNNNGC 6 cut(s) 190, 383, 572, 588, 761, 799
NaeI GCCGGC 1 cut(s) 577
NdeI CATATG 1 cut(s) 990
NgoMIV GCCGGC 1 cut(s) 575
NlaIII CATG 6 cut(s) 99, 197, 208, 358, 371, 653
NlaIV GGNNCC 4 cut(s) 71, 72, 317, 378
NmeAIII GCCGAG 1 cut(s) 790
NmuCI GTSAC 1 cut(s) 217
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 197
PagI TCATGA 2 cut(s) 367, 649
PceI AGGCCT 1 cut(s) 669
PdiI GCCGGC 1 cut(s) 577
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 781
PkrI GCNGC 4 cut(s) 154, 506, 581, 870
PleI GAGTC 3 cut(s) 328, 434, 674
PpsI GAGTC 3 cut(s) 328, 434, 674
Ppu21I YACGTR 1 cut(s) 55
PpuMI RGGWCCY 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 609
PspGI CCWGG 1 cut(s) 609
PspN4I GGNNCC 4 cut(s) 71, 72, 317, 378
PspPI GGNCC 5 cut(s) 70, 92, 346, 590, 600
PspPPI RGGWCCY 1 cut(s) 70
PstI CTGCAG 1 cut(s) 17
RsaI GTAC 2 cut(s) 53, 59
RsaNI GTAC 2 cut(s) 52, 58
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 3 cut(s) 251, 843, 1023
SatI GCNGC 4 cut(s) 153, 505, 580, 869
Sau96I GGNCC 5 cut(s) 70, 92, 346, 590, 600
SchI GAGTC 3 cut(s) 328, 435, 674
ScrFI CCNGG 1 cut(s) 611
SduI GDGCHC 4 cut(s) 379, 693, 716, 795
SfcI CTRYAG 1 cut(s) 13
SfiI GGCCNNNNNGGCC 1 cut(s) 588
SgrAI CRCCGGYG 1 cut(s) 575
SinI GGWCC 2 cut(s) 70, 346
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
Sse9I AATT 6 cut(s) 41, 645, 744, 925, 1020, 1032
SseBI AGGCCT 1 cut(s) 669
SspMI CTAG 4 cut(s) 671, 717, 741, 1039
StuI AGGCCT 1 cut(s) 669
StyD4I CCNGG 1 cut(s) 609
TaaI ACNGT 1 cut(s) 511
TaiI ACGT 3 cut(s) 57, 477, 819
TaqI TCGA 1 cut(s) 117
TaqII GACCGA 1 cut(s) 188
TasI AATT 6 cut(s) 41, 645, 744, 925, 1020, 1032
TatI WGTACW 1 cut(s) 57
TauI GCSGC 3 cut(s) 507, 582, 871
TfiI GAWTC 1 cut(s) 781
Tru1I TTAA 3 cut(s) 251, 843, 1023
Tru9I TTAA 3 cut(s) 251, 843, 1023
TscAI CASTG 1 cut(s) 623
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 7 cut(s) 118, 193, 343, 638, 666, 741, 977
TspGWI ACGGA 3 cut(s) 41, 795, 994
TspRI CASTG 1 cut(s) 623
VpaK11BI GGWCC 2 cut(s) 70, 346
XapI RAATTY 3 cut(s) 41, 645, 925
XceI RCATGY 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 41
XspI CTAG 4 cut(s) 671, 717, 741, 1039
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.