EIN3-binding F-box protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25490 AT5G25350 |
| fragaria_vesca | FvH4_1g03130 FvH4_2g29100 |
| malus_domestica | MD02G1030300.v1.1 MD08G1150200.v1.1 MD15G1171800.v1.1 |
| prunus_persica | Prupe.1G480700_v2.0.a1 Prupe.1G480700_v2.0.a1 Prupe.1G480700_v2.0.a1 Prupe.1G480700_v2.0.a1 Prupe.7G244300_v2.0.a1 |
| pyrus_communis | pycom02g02520 pycom08g12590 pycom15g11280 pycom15g15330 |
| rosa_chinensis | RchiOBHm_Chr2g0088251 RchiOBHm_Chr6g0297981 |
| rosa_laevigata | RLG00000011546 RLG00000015936 |
| rosa_multiflora | Rmu_sc0002800.1_g000025 Rmu_sc0004235.1_g000046 |
| rosa_roxburghii | Rroxscaffold_2G00152810 Rroxscaffold_7G00170030 Rroxscaffold_7G00178860 |
| rosa_rugosa | Rorug01G0482400 Rorug06G0277500 |
| rosa_samantha | Rh2AG037400 Rh2BG036600 Rh2CG037700 Rh2DG037100 Rh6AG388000 Rh6BG396200 Rh6CG402200 Rh6DG388400 |
| rosa_wichuraiana | Rw0G007080 Rw2G002940 Rw6G033860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 240 |
| AccIII | TCCGGA | 1 cut(s) | 315 |
| AciI | CCGC | 3 cut(s) | 133, 1284, 1755 |
| AclI | AACGTT | 1 cut(s) | 204 |
| AclWI | GGATC | 3 cut(s) | 505, 1216, 1374 |
| AcoI | YGGCCR | 1 cut(s) | 1425 |
| AcsI | RAATTY | 3 cut(s) | 736, 742, 1564 |
| AcuI | CTGAAG | 1 cut(s) | 899 |
| AcyI | GRCGYC | 1 cut(s) | 241 |
| AdeI | CACNNNGTG | 1 cut(s) | 423 |
| AfaI | GTAC | 3 cut(s) | 1350, 1623, 1876 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 165, 661, 1179, 1228, 1409, 1429, 1854 |
| AflII | CTTAAG | 1 cut(s) | 304 |
| AgsI | TTSAA | 9 cut(s) | 179, 693, 751, 768, 925, 1109, 1138, 1564, 1861 |
| AjnI | CCWGG | 3 cut(s) | 43, 1402, 1422 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 727, 759 |
| AleI | CACNNNNGTG | 1 cut(s) | 1310 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 596, 628 |
| Alw21I | GWGCWC | 1 cut(s) | 269 |
| Alw26I | GTCTC | 3 cut(s) | 286, 594, 1001 |
| AlwI | GGATC | 3 cut(s) | 505, 1216, 1374 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 840, 1057 |
| Ama87I | CYCGRG | 1 cut(s) | 1514 |
| Aor13HI | TCCGGA | 1 cut(s) | 315 |
| AoxI | GGCC | 6 cut(s) | 550, 628, 1425, 1735, 1840, 1938 |
| ApeKI | GCWGC | 4 cut(s) | 461, 1202, 1742, 1903 |
| ApoI | RAATTY | 3 cut(s) | 736, 742, 1564 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1264 |
| AspLEI | GCGC | 1 cut(s) | 243 |
| AspS9I | GGNCC | 1 cut(s) | 1840 |
| AsuC2I | CCSGG | 1 cut(s) | 1085 |
| AsuHPI | GGTGA | 5 cut(s) | 392, 632, 1258, 1297, 1678 |
| AsuNHI | GCTAGC | 1 cut(s) | 1418 |
| AvaI | CYCGRG | 1 cut(s) | 1514 |
| BaeGI | GKGCMC | 2 cut(s) | 689, 1448 |
| BalI | TGGCCA | 1 cut(s) | 1427 |
| BanI | GGYRCC | 1 cut(s) | 240 |
| BanII | GRGCYC | 4 cut(s) | 101, 139, 269, 341 |
| BbsI | GAAGAC | 1 cut(s) | 1142 |
| Bbv12I | GWGCWC | 1 cut(s) | 269 |
| BbvCI | CCTCAGC | 1 cut(s) | 1449 |
| BbvI | GCAGC | 4 cut(s) | 448, 1189, 1729, 1890 |
| BccI | CCATC | 4 cut(s) | 401, 1397, 1628, 1846 |
| BceAI | ACGGC | 2 cut(s) | 471, 932 |
| BciT130I | CCWGG | 3 cut(s) | 45, 1404, 1424 |
| BciVI | GTATCC | 2 cut(s) | 323, 1180 |
| BclI | TGATCA | 1 cut(s) | 372 |
| BcnI | CCSGG | 1 cut(s) | 1085 |
| BcoDI | GTCTC | 3 cut(s) | 286, 594, 1001 |
| BfaI | CTAG | 8 cut(s) | 126, 497, 870, 1362, 1419, 1616, 1703, 1791 |
| BfmI | CTRYAG | 1 cut(s) | 1203 |
| BfoI | RGCGCY | 1 cut(s) | 244 |
| BfrI | CTTAAG | 1 cut(s) | 304 |
| BfuI | GTATCC | 2 cut(s) | 323, 1180 |
| BglII | AGATCT | 1 cut(s) | 1298 |
| BisI | GCNGC | 4 cut(s) | 462, 1203, 1743, 1904 |
| BlsI | GCNGC | 4 cut(s) | 463, 1204, 1744, 1905 |
| Bme1390I | CCNGG | 4 cut(s) | 45, 1085, 1404, 1424 |
| BmeT110I | CYCGRG | 1 cut(s) | 1514 |
| BmgT120I | GGNCC | 1 cut(s) | 1840 |
| BmiI | GGNNCC | 3 cut(s) | 100, 242, 478 |
| BmrFI | CCNGG | 4 cut(s) | 45, 1085, 1404, 1424 |
| BmsI | GCATC | 9 cut(s) | 150, 284, 320, 563, 641, 1115, 1483, 1547, 1645 |
| BmtI | GCTAGC | 1 cut(s) | 1422 |
| BpiI | GAAGAC | 1 cut(s) | 1142 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 251, 283 |
| BpmI | CTGGAG | 2 cut(s) | 983, 1250 |
| Bpu10I | CCTNAGC | 2 cut(s) | 567, 1449 |
| BpuEI | CTTGAG | 5 cut(s) | 230, 569, 1026, 1235, 1489 |
| BpuMI | CCSGG | 1 cut(s) | 1085 |
| Bsa29I | ATCGAT | 2 cut(s) | 328, 509 |
| BsaBI | GATNNNNATC | 2 cut(s) | 387, 716 |
| BsaHI | GRCGYC | 1 cut(s) | 241 |
| BsaI | GGTCTC | 1 cut(s) | 1001 |
| BsaWI | WCCGGW | 1 cut(s) | 315 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 256, 286 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 165, 661, 1179, 1228, 1409, 1429, 1854 |
| Bse1I | ACTGG | 4 cut(s) | 382, 480, 682, 1233 |
| Bse8I | GATNNNNATC | 2 cut(s) | 387, 716 |
| BseAI | TCCGGA | 1 cut(s) | 315 |
| BseBI | CCWGG | 3 cut(s) | 45, 1404, 1424 |
| BseCI | ATCGAT | 2 cut(s) | 328, 509 |
| BseGI | GGATG | 8 cut(s) | 115, 275, 578, 656, 1130, 1339, 1389, 1562 |
| BseJI | GATNNNNATC | 2 cut(s) | 387, 716 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 165, 661, 1179, 1228, 1409, 1429, 1854 |
| BseMII | CTCAG | 4 cut(s) | 581, 1003, 1286, 1463 |
| BseNI | ACTGG | 4 cut(s) | 382, 480, 682, 1233 |
| BseRI | GAGGAG | 2 cut(s) | 277, 1247 |
| BseSI | GKGCMC | 2 cut(s) | 689, 1448 |
| BseXI | GCAGC | 4 cut(s) | 448, 1189, 1729, 1890 |
| BsgI | GTGCAG | 1 cut(s) | 1660 |
| BshFI | GGCC | 6 cut(s) | 552, 630, 1427, 1737, 1842, 1940 |
| BshNI | GGYRCC | 1 cut(s) | 240 |
| BshVI | ATCGAT | 2 cut(s) | 328, 509 |
| BsiHKAI | GWGCWC | 1 cut(s) | 269 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1514 |
| BsiSI | CCGG | 2 cut(s) | 316, 1084 |
| BslFI | GGGAC | 1 cut(s) | 851 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 165, 661, 1179, 1228, 1409, 1429, 1854 |
| BsmAI | GTCTC | 3 cut(s) | 286, 594, 1001 |
| BsmBI | CGTCTC | 1 cut(s) | 286 |
| BsmFI | GGGAC | 1 cut(s) | 851 |
| BsmI | GAATGC | 1 cut(s) | 224 |
| BsnI | GGCC | 6 cut(s) | 552, 630, 1427, 1737, 1842, 1940 |
| Bso31I | GGTCTC | 1 cut(s) | 1001 |
| BsoBI | CYCGRG | 1 cut(s) | 1514 |
| Bsp1286I | GDGCHC | 6 cut(s) | 101, 139, 269, 341, 689, 1448 |
| Bsp13I | TCCGGA | 1 cut(s) | 315 |
| Bsp19I | CCATGG | 2 cut(s) | 69, 1428 |
| BspACI | CCGC | 3 cut(s) | 133, 1284, 1755 |
| BspANI | GGCC | 6 cut(s) | 552, 630, 1427, 1737, 1842, 1940 |
| BspCNI | CTCAG | 4 cut(s) | 580, 1002, 1287, 1462 |
| BspDI | ATCGAT | 2 cut(s) | 328, 509 |
| BspEI | TCCGGA | 1 cut(s) | 315 |
| BspLI | GGNNCC | 3 cut(s) | 100, 242, 478 |
| BspMAI | CTGCAG | 1 cut(s) | 1207 |
| BspOI | GCTAGC | 1 cut(s) | 1422 |
| BspPI | GGATC | 3 cut(s) | 505, 1216, 1374 |
| BspT107I | GGYRCC | 1 cut(s) | 240 |
| BspTI | CTTAAG | 1 cut(s) | 304 |
| BspTNI | GGTCTC | 1 cut(s) | 1001 |
| BsrI | ACTGG | 4 cut(s) | 382, 480, 682, 1233 |
| BssNI | GRCGYC | 1 cut(s) | 241 |
| BssT1I | CCWWGG | 3 cut(s) | 69, 547, 1428 |
| Bst2UI | CCWGG | 3 cut(s) | 45, 1404, 1424 |
| Bst6I | CTCTTC | 1 cut(s) | 616 |
| BstACI | GRCGYC | 1 cut(s) | 241 |
| BstAFI | CTTAAG | 1 cut(s) | 304 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1125, 1161 |
| BstC8I | GCNNGC | 9 cut(s) | 6, 131, 135, 139, 788, 792, 1223, 1420, 1660 |
| BstDEI | CTNAG | 6 cut(s) | 285, 567, 989, 1295, 1309, 1449 |
| BstDSI | CCRYGG | 4 cut(s) | 69, 487, 532, 1428 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 163 |
| BstF5I | GGATG | 8 cut(s) | 115, 275, 578, 656, 1130, 1339, 1389, 1562 |
| BstH2I | RGCGCY | 1 cut(s) | 244 |
| BstHHI | GCGC | 1 cut(s) | 243 |
| BstMAI | GTCTC | 3 cut(s) | 286, 594, 1001 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 126, 467, 1125, 1161, 1202, 1424 |
| BstNI | CCWGG | 3 cut(s) | 45, 1404, 1424 |
| BstSCI | CCNGG | 4 cut(s) | 43, 1083, 1402, 1422 |
| BstSFI | CTRYAG | 1 cut(s) | 1203 |
| BstSLI | GKGCMC | 2 cut(s) | 689, 1448 |
| BstV1I | GCAGC | 4 cut(s) | 448, 1189, 1729, 1890 |
| BstV2I | GAAGAC | 1 cut(s) | 1142 |
| BstX2I | RGATCY | 1 cut(s) | 1298 |
| BstYI | RGATCY | 1 cut(s) | 1298 |
| Bsu15I | ATCGAT | 2 cut(s) | 328, 509 |
| BsuI | GTATCC | 2 cut(s) | 323, 1180 |
| BsuRI | GGCC | 6 cut(s) | 552, 630, 1427, 1737, 1842, 1940 |
| BsuTUI | ATCGAT | 2 cut(s) | 328, 509 |
| BtgI | CCRYGG | 4 cut(s) | 69, 487, 532, 1428 |
| BtsCI | GGATG | 8 cut(s) | 115, 275, 578, 656, 1130, 1339, 1389, 1562 |
| BtsIMutI | CAGTG | 4 cut(s) | 375, 689, 997, 1725 |
| Cac8I | GCNNGC | 9 cut(s) | 6, 131, 135, 139, 788, 792, 1223, 1420, 1660 |
| CaiI | CAGNNNCTG | 2 cut(s) | 840, 1057 |
| CfoI | GCGC | 1 cut(s) | 243 |
| Cfr13I | GGNCC | 1 cut(s) | 1840 |
| ClaI | ATCGAT | 2 cut(s) | 328, 509 |
| CseI | GACGC | 1 cut(s) | 371 |
| Csp6I | GTAC | 3 cut(s) | 1349, 1622, 1875 |
| CviAII | CATG | 8 cut(s) | 70, 104, 860, 1030, 1080, 1321, 1429, 1604 |
| CviQI | GTAC | 3 cut(s) | 1349, 1622, 1875 |
| DdeI | CTNAG | 6 cut(s) | 285, 567, 989, 1295, 1309, 1449 |
| DinI | GGCGCC | 1 cut(s) | 242 |
| DraI | TTTAAA | 1 cut(s) | 741 |
| DraIII | CACNNNGTG | 1 cut(s) | 423 |
| EaeI | YGGCCR | 1 cut(s) | 1425 |
| Eam1104I | CTCTTC | 1 cut(s) | 616 |
| EarI | CTCTTC | 1 cut(s) | 616 |
| Ecl136II | GAGCTC | 1 cut(s) | 267 |
| Eco130I | CCWWGG | 3 cut(s) | 69, 547, 1428 |
| Eco147I | AGGCCT | 1 cut(s) | 630 |
| Eco24I | GRGCYC | 4 cut(s) | 101, 139, 269, 341 |
| Eco31I | GGTCTC | 1 cut(s) | 1001 |
| Eco32I | GATATC | 1 cut(s) | 1933 |
| Eco53kI | GAGCTC | 1 cut(s) | 267 |
| Eco57I | CTGAAG | 1 cut(s) | 899 |
| Eco88I | CYCGRG | 1 cut(s) | 1514 |
| EcoICRI | GAGCTC | 1 cut(s) | 267 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 163 |
| EcoRII | CCWGG | 3 cut(s) | 43, 1402, 1422 |
| EcoRV | GATATC | 1 cut(s) | 1933 |
| EcoT14I | CCWWGG | 3 cut(s) | 69, 547, 1428 |
| EcoT38I | GRGCYC | 4 cut(s) | 101, 139, 269, 341 |
| EgeI | GGCGCC | 1 cut(s) | 242 |
| EheI | GGCGCC | 1 cut(s) | 242 |
| ErhI | CCWWGG | 3 cut(s) | 69, 547, 1428 |
| Esp3I | CGTCTC | 1 cut(s) | 286 |
| FaeI | CATG | 8 cut(s) | 73, 107, 863, 1033, 1083, 1324, 1432, 1607 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1148, 1180, 1533, 1565, 1807, 1839 |
| FaqI | GGGAC | 1 cut(s) | 851 |
| FatI | CATG | 8 cut(s) | 69, 103, 859, 1029, 1079, 1320, 1428, 1603 |
| FauI | CCCGC | 1 cut(s) | 126 |
| FbaI | TGATCA | 1 cut(s) | 372 |
| Fnu4HI | GCNGC | 4 cut(s) | 462, 1203, 1743, 1904 |
| FokI | GGATG | 8 cut(s) | 122, 262, 585, 663, 1137, 1346, 1376, 1569 |
| FriOI | GRGCYC | 4 cut(s) | 101, 139, 269, 341 |
| Fsp4HI | GCNGC | 4 cut(s) | 462, 1203, 1743, 1904 |
| FspBI | CTAG | 8 cut(s) | 126, 497, 870, 1362, 1419, 1616, 1703, 1791 |
| GlaI | GCGC | 1 cut(s) | 242 |
| GluI | GCNGC | 4 cut(s) | 462, 1203, 1743, 1904 |
| GsuI | CTGGAG | 2 cut(s) | 983, 1250 |
| HaeII | RGCGCY | 1 cut(s) | 244 |
| HaeIII | GGCC | 6 cut(s) | 552, 630, 1427, 1737, 1842, 1940 |
| HapII | CCGG | 2 cut(s) | 316, 1084 |
| HgaI | GACGC | 1 cut(s) | 371 |
| HhaI | GCGC | 1 cut(s) | 243 |
| Hin1I | GRCGYC | 1 cut(s) | 241 |
| Hin1II | CATG | 8 cut(s) | 73, 107, 863, 1033, 1083, 1324, 1432, 1607 |
| Hin6I | GCGC | 1 cut(s) | 241 |
| HinP1I | GCGC | 1 cut(s) | 241 |
| HincII | GTYRAC | 1 cut(s) | 349 |
| HindII | GTYRAC | 1 cut(s) | 349 |
| HindIII | AAGCTT | 4 cut(s) | 668, 911, 1044, 1660 |
| HinfI | GANTC | 9 cut(s) | 190, 758, 1054, 1326, 1501, 1546, 1627, 1730, 1861 |
| HpaII | CCGG | 2 cut(s) | 316, 1084 |
| HphI | GGTGA | 5 cut(s) | 392, 632, 1258, 1297, 1678 |
| Hpy166II | GTNNAC | 2 cut(s) | 349, 1912 |
| Hpy188I | TCNGA | 5 cut(s) | 358, 515, 1174, 1394, 1801 |
| Hpy8I | GTNNAC | 2 cut(s) | 349, 1912 |
| HpyAV | CCTTC | 9 cut(s) | 159, 313, 425, 588, 620, 699, 1431, 1523, 1833 |
| HpyCH4IV | ACGT | 1 cut(s) | 204 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 126, 467, 1125, 1161, 1202, 1424 |
| HpyF3I | CTNAG | 6 cut(s) | 285, 567, 989, 1295, 1309, 1449 |
| HpySE526I | ACGT | 1 cut(s) | 204 |
| Hsp92I | GRCGYC | 1 cut(s) | 241 |
| Hsp92II | CATG | 8 cut(s) | 73, 107, 863, 1033, 1083, 1324, 1432, 1607 |
| HspAI | GCGC | 1 cut(s) | 241 |
| KasI | GGCGCC | 1 cut(s) | 240 |
| Kpn2I | TCCGGA | 1 cut(s) | 315 |
| Ksp22I | TGATCA | 1 cut(s) | 372 |
| LmnI | GCTCC | 4 cut(s) | 104, 168, 264, 815 |
| Lsp1109I | GCAGC | 4 cut(s) | 448, 1189, 1729, 1890 |
| LweI | GCATC | 9 cut(s) | 150, 284, 320, 563, 641, 1115, 1483, 1547, 1645 |
| MaeI | CTAG | 8 cut(s) | 126, 497, 870, 1362, 1419, 1616, 1703, 1791 |
| MaeII | ACGT | 1 cut(s) | 204 |
| MaeIII | GTNAC | 7 cut(s) | 26, 538, 620, 973, 1238, 1246, 1666 |
| MboII | GAAGA | 9 cut(s) | 200, 398, 448, 603, 882, 1142, 1657, 1685, 1743 |
| MfeI | CAATTG | 1 cut(s) | 1896 |
| MflI | RGATCY | 1 cut(s) | 1298 |
| MhlI | GDGCHC | 6 cut(s) | 101, 139, 269, 341, 689, 1448 |
| MlsI | TGGCCA | 1 cut(s) | 1427 |
| MluNI | TGGCCA | 1 cut(s) | 1427 |
| Mly113I | GGCGCC | 1 cut(s) | 241 |
| MlyI | GAGTC | 1 cut(s) | 1724 |
| MmeI | TCCRAC | 5 cut(s) | 454, 642, 723, 1197, 1891 |
| Mox20I | TGGCCA | 1 cut(s) | 1427 |
| MroI | TCCGGA | 1 cut(s) | 315 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1264 |
| MscI | TGGCCA | 1 cut(s) | 1427 |
| MseI | TTAA | 6 cut(s) | 15, 186, 305, 740, 908, 1551 |
| MslI | CAYNNNNRTG | 2 cut(s) | 108, 1310 |
| Msp20I | TGGCCA | 1 cut(s) | 1427 |
| MspA1I | CMGCKG | 1 cut(s) | 24 |
| MspCI | CTTAAG | 1 cut(s) | 304 |
| MspI | CCGG | 2 cut(s) | 316, 1084 |
| MspR9I | CCNGG | 4 cut(s) | 45, 1085, 1404, 1424 |
| MunI | CAATTG | 1 cut(s) | 1896 |
| Mva1269I | GAATGC | 1 cut(s) | 224 |
| MvaI | CCWGG | 3 cut(s) | 45, 1404, 1424 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 126, 467, 1125, 1161, 1202, 1424 |
| NarI | GGCGCC | 1 cut(s) | 241 |
| NciI | CCSGG | 1 cut(s) | 1085 |
| NcoI | CCATGG | 2 cut(s) | 69, 1428 |
| NheI | GCTAGC | 1 cut(s) | 1418 |
| NlaIII | CATG | 8 cut(s) | 73, 107, 863, 1033, 1083, 1324, 1432, 1607 |
| NlaIV | GGNNCC | 3 cut(s) | 100, 242, 478 |
| NmeAIII | GCCGAG | 1 cut(s) | 536 |
| NmuCI | GTSAC | 4 cut(s) | 26, 620, 1246, 1666 |
| OliI | CACNNNNGTG | 1 cut(s) | 1310 |
| PaeR7I | CTCGAG | 1 cut(s) | 1514 |
| PasI | CCCWGGG | 2 cut(s) | 44, 1403 |
| PceI | AGGCCT | 1 cut(s) | 630 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 210 |
| PctI | GAATGC | 1 cut(s) | 224 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1264 |
| PfeI | GAWTC | 8 cut(s) | 190, 758, 1054, 1326, 1501, 1546, 1627, 1861 |
| PkrI | GCNGC | 4 cut(s) | 463, 1204, 1744, 1905 |
| PleI | GAGTC | 1 cut(s) | 1724 |
| PluTI | GGCGCC | 1 cut(s) | 244 |
| PpsI | GAGTC | 1 cut(s) | 1724 |
| Psp124BI | GAGCTC | 1 cut(s) | 269 |
| Psp1406I | AACGTT | 1 cut(s) | 204 |
| Psp6I | CCWGG | 3 cut(s) | 43, 1402, 1422 |
| PspGI | CCWGG | 3 cut(s) | 43, 1402, 1422 |
| PspN4I | GGNNCC | 3 cut(s) | 100, 242, 478 |
| PspPI | GGNCC | 1 cut(s) | 1840 |
| PstI | CTGCAG | 1 cut(s) | 1207 |
| PstNI | CAGNNNCTG | 2 cut(s) | 840, 1057 |
| PsuI | RGATCY | 1 cut(s) | 1298 |
| PvuII | CAGCTG | 1 cut(s) | 24 |
| RsaI | GTAC | 3 cut(s) | 1350, 1623, 1876 |
| RsaNI | GTAC | 3 cut(s) | 1349, 1622, 1875 |
| RseI | CAYNNNNRTG | 2 cut(s) | 108, 1310 |
| SacI | GAGCTC | 1 cut(s) | 269 |
| SaqAI | TTAA | 6 cut(s) | 15, 186, 305, 740, 908, 1551 |
| SatI | GCNGC | 4 cut(s) | 462, 1203, 1743, 1904 |
| Sau96I | GGNCC | 1 cut(s) | 1840 |
| SchI | GAGTC | 1 cut(s) | 1724 |
| ScrFI | CCNGG | 4 cut(s) | 45, 1085, 1404, 1424 |
| SduI | GDGCHC | 6 cut(s) | 101, 139, 269, 341, 689, 1448 |
| SfaNI | GCATC | 9 cut(s) | 150, 284, 320, 563, 641, 1115, 1483, 1547, 1645 |
| SfcI | CTRYAG | 1 cut(s) | 1203 |
| SfoI | GGCGCC | 1 cut(s) | 242 |
| Sfr274I | CTCGAG | 1 cut(s) | 1514 |
| SlaI | CTCGAG | 1 cut(s) | 1514 |
| SmiI | ATTTAAAT | 1 cut(s) | 741 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 108, 1310 |
| SmlI | CTYRAG | 7 cut(s) | 245, 304, 584, 1041, 1214, 1468, 1514 |
| SmoI | CTYRAG | 7 cut(s) | 245, 304, 584, 1041, 1214, 1468, 1514 |
| SseBI | AGGCCT | 1 cut(s) | 630 |
| SsiI | CCGC | 3 cut(s) | 133, 1284, 1755 |
| SspDI | GGCGCC | 1 cut(s) | 240 |
| SspMI | CTAG | 8 cut(s) | 126, 497, 870, 1362, 1419, 1616, 1703, 1791 |
| SstI | GAGCTC | 1 cut(s) | 269 |
| StuI | AGGCCT | 1 cut(s) | 630 |
| StyD4I | CCNGG | 4 cut(s) | 43, 1083, 1402, 1422 |
| StyI | CCWWGG | 3 cut(s) | 69, 547, 1428 |
| SwaI | ATTTAAAT | 1 cut(s) | 741 |
| TaiI | ACGT | 1 cut(s) | 207 |
| TaqI | TCGA | 6 cut(s) | 328, 509, 756, 1378, 1515, 1712 |
| TatI | WGTACW | 1 cut(s) | 1874 |
| TfiI | GAWTC | 8 cut(s) | 190, 758, 1054, 1326, 1501, 1546, 1627, 1861 |
| Tru1I | TTAA | 6 cut(s) | 15, 186, 305, 740, 908, 1551 |
| Tru9I | TTAA | 6 cut(s) | 15, 186, 305, 740, 908, 1551 |
| TscAI | CASTG | 4 cut(s) | 382, 689, 997, 1732 |
| TseFI | GTSAC | 4 cut(s) | 26, 620, 1246, 1666 |
| TseI | GCWGC | 4 cut(s) | 461, 1202, 1742, 1903 |
| Tsp45I | GTSAC | 4 cut(s) | 26, 620, 1246, 1666 |
| TspDTI | ATGAA | 5 cut(s) | 231, 399, 585, 917, 1053 |
| TspRI | CASTG | 4 cut(s) | 382, 689, 997, 1732 |
| Vha464I | CTTAAG | 1 cut(s) | 304 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 163 |
| XapI | RAATTY | 3 cut(s) | 736, 742, 1564 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 158 |
| XhoI | CTCGAG | 1 cut(s) | 1514 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1264 |
| XspI | CTAG | 8 cut(s) | 126, 497, 870, 1362, 1419, 1616, 1703, 1791 |