RLG00000015936

EIN3-binding F-box protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
2589561 .. 2592094
2534 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015936

Sequence Viewer

Length: 1932 bp
ATGCCGACCCTGGTTAATTACAGTGGTGACGATGATTTCTACTCTGGGGCCTCTTTCTACTCAAATCCCATGGATTTGGGCTGCCTGTTGTCACTTGGCTCCAATGCGGATTTGTATTACCCTTCTAGCAAGCGGGCTCGCATCAGTTCCAAATTTGACTCTGGATGGAGCAATTTTGAGCAAGAGAAGAAAGCTTCCATTGAAGTTCTTCCTGAGGAATGCCTCTTTGAGATCTTCAGGCGGCTGCATGGTGGCAAAGAGAAGAGCGCATGTGCCTCTGTCTCCAAGAAGTGGCTTATGCTCCTAAGCAGCATCCGCCCATCTGAGAAGGAGATCCCCAAATCAGATGACACTGAACCGACCACAGGCGATGAAGATCAAGAACTGGAAGCTGATGGTTTCCTTACAAGATCTTTGGAAGGGAAGAAAGCAACAGATGTCAGACTTGCTGCTATTGCCGTTGGAACCAGTAGCCGTGGGGGACTGGGGAAGTTGTCAATTCGAGGTAGCGATTCAATTCGTGGAGTTACCAACCTTGGCCTGTCAGCAGTTGCTCGGGGATGCCCTTCTCTCAAGGCTCTTTCTCTGTGGAATGTCTCTTCTGTTGGTGATCAAGGTTTGATTGAGATAGCTAAAGGCTGCCCTTTGCTGGAGAAGCTTGATCTTTGCCAGTGCCCCTCAATTTCCAGCAAAGGTTTGATTGCAATTGCAGAGAACTGCCCAAATTTGGCTGCTTTGAGTATTGAGTCATGTCCCAAGATTGGAAATGAGGGCTTGCAAGCTATTGGAAAGTCATGCTCCAAGCTGCAGTCCATATCTATCAGGGACTGTATTCTTGTTGGGGATCATGGAGTATCTAGTTTGTTGTCGTCAGCGTCTTCTGTTCTGACGAAGGTAAAGCTTCAGGCTTTGAATATCACAGATTTCTCGCTTGCAGTAATTGGGCATTATGGCAAGGCTGTTACCAATTTAGTTCTCACTGGTCTCCAGAATGTCAGTGAGAAAGGCTTTTGGGTCATGGGTAATGCTCAAGCTCTGCAGAGTCTGATCTCATTGACAATCACTTCCTGCCGAGGAACTACAGATGTCAGTCTTGAAGCCATCGGCAAGGGCTGCACAAATTTGAAGCAGATGTGCCTTCGCAAGTGCTGTTTTGTATCCGACAATGGATTGCTTGCTTTTTCCAAAGCCGCAGGATCACTTGAGAGCCTGCAACTGGAGGAGTGTAACAGGGTTACCCAATCAGGGATTATTGCTGCCCTGTCGAACTGTGGAGCAAAGCTGAGGTCTCTTACCCTAGTAAAGTGCATGGGAATCAGGGATATTGTTGTAGGAGTACCTATGTCCTCTCCAGGCACATCTCTTCGATCGTTGTCCATTAGAAACTGCCCTGGTTTTGGTAGTGCTAGCCTGGCCGTGGTGGGAAGGCTGTGCCCTCAGCTTCGCAACGTAGAACTGAGTGGTCTCTATGGAATGACAGATGCTGGGATTCTCTCACTTCTAGAGAGCTTGGAGGATGGACTTGTCAAAGTGAATCTTAGTGGCTGCTTGAATTTGACAGATGAAGTAGTTGTGGCCATGGCTAGGCTACACAGGGAAACCCTGGAGGTTCTGAATCTCGATGGGTGCAGGAAGATCACCGATGCAAGCTTGGCAGCAATCGCAGCCAACTGCTTGTTTCTTCGTGAGCTAGATGTAACAAAGAGTGGAATCACGGATTCTGGCCTTGCTGTCTTCTCTTGTGCTGAGCAGATCAGTTTACAAGTGCTCTCCATATCTGGTTGTTCTAAAGTATCAAACAAGAGCCTCTCTTCCCTGAAAAGATTGGGCAAGACCCTGTTGGGATTGAATCTCCAACACTGTACTGCAATTAGCAACAGATCAGTTGAGCTGCTTATAGAGAGCTTATGGAGATGCGATATCCTTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

644

Amino Acids

68.13

Weight (kDa)

7.63

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 171 - 395 5.8e-21 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 472 - 635 3.9e-13 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 291
AciI CCGC 5 cut(s) 107, 133, 241, 316, 1191
AclWI GGATC 3 cut(s) 328, 852, 1204
AcoI YGGCCR 2 cut(s) 1413, 1575
AcsI RAATTY 4 cut(s) 152, 724, 1120, 1552
AcuI CTGAAG 2 cut(s) 220, 887
AfaI GTAC 2 cut(s) 1338, 1864
AgsI TTSAA 7 cut(s) 203, 516, 913, 1097, 1126, 1552, 1849
AjnI CCWGG 5 cut(s) 9, 1351, 1390, 1410, 1602
Alw21I GWGCWC 1 cut(s) 1770
Alw26I GTCTC 5 cut(s) 286, 601, 989, 1293, 1469
AlwI GGATC 3 cut(s) 328, 852, 1204
AlwNI CAGNNNCTG 3 cut(s) 828, 1045, 1484
Ama87I CYCGRG 1 cut(s) 555
AoxI GGCC 5 cut(s) 48, 538, 1413, 1575, 1723
ApoI RAATTY 4 cut(s) 152, 724, 1120, 1552
ArsI GACNNNNNNTTYG 2 cut(s) 1271, 1303
Asp700I GAANNNNTTC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 48
AsuHPI GGTGA 3 cut(s) 38, 620, 1630
AsuNHI GCTAGC 1 cut(s) 1406
AvaI CYCGRG 1 cut(s) 555
AxyI CCTNAGG 1 cut(s) 213
BaeGI GKGCMC 2 cut(s) 677, 1436
BalI TGGCCA 1 cut(s) 1577
BanII GRGCYC 1 cut(s) 139
BbsI GAAGAC 2 cut(s) 870, 1726
Bbv12I GWGCWC 1 cut(s) 1770
BbvCI CCTCAGC 2 cut(s) 1283, 1437
BccI CCATC 6 cut(s) 159, 328, 389, 1109, 1511, 1616
BceAI ACGGC 3 cut(s) 443, 459, 1400
BcgI CGANNNNNNTGC 1 cut(s) 1907
BciT130I CCWGG 5 cut(s) 11, 1353, 1392, 1412, 1604
BciVI GTATCC 1 cut(s) 1168
BclI TGATCA 1 cut(s) 610
BcoDI GTCTC 5 cut(s) 286, 601, 989, 1293, 1469
BfaI CTAG 7 cut(s) 126, 858, 1298, 1407, 1502, 1584, 1691
BfmI CTRYAG 3 cut(s) 806, 1037, 1080
BfuI GTATCC 1 cut(s) 1168
BglII AGATCT 2 cut(s) 231, 410
BlpI GCTNAGC 1 cut(s) 1746
Bme1390I CCNGG 5 cut(s) 11, 1353, 1392, 1412, 1604
BmeT110I CYCGRG 1 cut(s) 555
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 3 cut(s) 49, 100, 466
BmrFI CCNGG 5 cut(s) 11, 1353, 1392, 1412, 1604
BmrI ACTGGG 1 cut(s) 494
BmsI GCATC 6 cut(s) 150, 321, 551, 1471, 1633, 1904
BmtI GCTAGC 1 cut(s) 1410
BmuI ACTGGG 1 cut(s) 494
BpiI GAAGAC 2 cut(s) 870, 1726
BpmI CTGGAG 5 cut(s) 671, 971, 1238, 1335, 1625
Bpu10I CCTNAGC 3 cut(s) 305, 1283, 1437
Bpu1102I GCTNAGC 1 cut(s) 1746
BpuEI CTTGAG 3 cut(s) 557, 1014, 1223
BsaBI GATNNNNATC 1 cut(s) 375
BsaI GGTCTC 3 cut(s) 989, 1293, 1469
BsaJI CCNNGG 9 cut(s) 9, 69, 475, 535, 1072, 1390, 1416, 1578, 1602
Bse1I ACTGG 6 cut(s) 390, 468, 489, 670, 985, 1221
Bse21I CCTNAGG 1 cut(s) 213
Bse8I GATNNNNATC 1 cut(s) 375
BseBI CCWGG 5 cut(s) 11, 1353, 1392, 1412, 1604
BseDI CCNNGG 9 cut(s) 9, 69, 475, 535, 1072, 1390, 1416, 1578, 1602
BseGI GGATG 4 cut(s) 170, 312, 566, 1522
BseJI GATNNNNATC 1 cut(s) 375
BseMII CTCAG 6 cut(s) 204, 315, 1274, 1448, 1451, 1737
BseNI ACTGG 6 cut(s) 390, 468, 489, 670, 985, 1221
BseRI GAGGAG 1 cut(s) 1235
BseSI GKGCMC 2 cut(s) 677, 1436
BseYI CCCAGC 1 cut(s) 1484
BsgI GTGCAG 2 cut(s) 1099, 1648
Bsh1285I CGRYCG 1 cut(s) 1370
BshFI GGCC 5 cut(s) 50, 540, 1415, 1577, 1725
BsiEI CGRYCG 1 cut(s) 1370
BsiHKAI GWGCWC 1 cut(s) 1770
BsiHKCI CYCGRG 1 cut(s) 555
BslFI GGGAC 3 cut(s) 495, 738, 839
BsmAI GTCTC 5 cut(s) 286, 601, 989, 1293, 1469
BsmFI GGGAC 3 cut(s) 495, 738, 839
BsmI GAATGC 1 cut(s) 224
BsnI GGCC 5 cut(s) 50, 540, 1415, 1577, 1725
Bso31I GGTCTC 3 cut(s) 989, 1293, 1469
BsoBI CYCGRG 1 cut(s) 555
Bsp1286I GDGCHC 4 cut(s) 139, 677, 1436, 1770
Bsp1720I GCTNAGC 1 cut(s) 1746
Bsp19I CCATGG 2 cut(s) 69, 1578
BspACI CCGC 5 cut(s) 107, 133, 241, 316, 1191
BspANI GGCC 5 cut(s) 50, 540, 1415, 1577, 1725
BspCNI CTCAG 6 cut(s) 205, 316, 1275, 1449, 1450, 1738
BspLI GGNNCC 3 cut(s) 49, 100, 466
BspMAI CTGCAG 2 cut(s) 810, 1041
BspOI GCTAGC 1 cut(s) 1410
BspPI GGATC 3 cut(s) 328, 852, 1204
BspQI GCTCTTC 1 cut(s) 257
BspTNI GGTCTC 3 cut(s) 989, 1293, 1469
BsrI ACTGG 6 cut(s) 390, 468, 489, 670, 985, 1221
BssECI CCNNGG 9 cut(s) 9, 69, 475, 535, 1072, 1390, 1416, 1578, 1602
BssT1I CCWWGG 3 cut(s) 69, 535, 1578
Bst2UI CCWGG 5 cut(s) 11, 1353, 1392, 1412, 1604
Bst4CI ACNGT 4 cut(s) 23, 830, 1271, 1862
Bst6I CTCTTC 4 cut(s) 257, 604, 1368, 1816
BstAPI GCANNNNNTGC 1 cut(s) 1113
BstDEI CTNAG 8 cut(s) 213, 305, 324, 1283, 1437, 1457, 1538, 1746
BstDSI CCRYGG 4 cut(s) 69, 475, 1416, 1578
BstEII GGTNACC 1 cut(s) 1234
BstF5I GGATG 4 cut(s) 170, 312, 566, 1522
BstHHI GCGC 1 cut(s) 269
BstMAI GTCTC 5 cut(s) 286, 601, 989, 1293, 1469
BstMCI CGRYCG 1 cut(s) 1370
BstMWI GCNNNNNNNGC 8 cut(s) 315, 455, 655, 1113, 1412, 1652, 1661, 1664
BstNI CCWGG 5 cut(s) 11, 1353, 1392, 1412, 1604
BstNSI RCATGY 1 cut(s) 273
BstPI GGTNACC 1 cut(s) 1234
BstSCI CCNGG 5 cut(s) 9, 1351, 1390, 1410, 1602
BstSFI CTRYAG 3 cut(s) 806, 1037, 1080
BstSLI GKGCMC 2 cut(s) 677, 1436
BstV2I GAAGAC 2 cut(s) 870, 1726
BstX2I RGATCY 3 cut(s) 231, 333, 410
BstXI CCANNNNNNTGG 1 cut(s) 76
BstYI RGATCY 3 cut(s) 231, 333, 410
Bsu36I CCTNAGG 1 cut(s) 213
BsuI GTATCC 1 cut(s) 1168
BsuRI GGCC 5 cut(s) 50, 540, 1415, 1577, 1725
BtgI CCRYGG 4 cut(s) 69, 475, 1416, 1578
BtgZI GCGATG 1 cut(s) 384
BtsCI GGATG 4 cut(s) 170, 312, 566, 1522
BtsIMutI CAGTG 6 cut(s) 28, 351, 677, 978, 1003, 1858
CaiI CAGNNNCTG 3 cut(s) 828, 1045, 1484
CfoI GCGC 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 48
CseI GACGC 1 cut(s) 864
Csp6I GTAC 2 cut(s) 1337, 1863
CviAII CATG 9 cut(s) 70, 248, 270, 750, 795, 848, 1018, 1309, 1579
CviQI GTAC 2 cut(s) 1337, 1863
DdeI CTNAG 8 cut(s) 213, 305, 324, 1283, 1437, 1457, 1538, 1746
EaeI YGGCCR 2 cut(s) 1413, 1575
Eam1104I CTCTTC 4 cut(s) 257, 604, 1368, 1816
EarI CTCTTC 4 cut(s) 257, 604, 1368, 1816
EciI GGCGGA 1 cut(s) 305
Eco130I CCWWGG 3 cut(s) 69, 535, 1578
Eco24I GRGCYC 1 cut(s) 139
Eco31I GGTCTC 3 cut(s) 989, 1293, 1469
Eco32I GATATC 1 cut(s) 1921
Eco57I CTGAAG 2 cut(s) 220, 887
Eco81I CCTNAGG 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 555
Eco91I GGTNACC 1 cut(s) 1234
EcoO109I RGGNCCY 1 cut(s) 48
EcoO65I GGTNACC 1 cut(s) 1234
EcoRII CCWGG 5 cut(s) 9, 1351, 1390, 1410, 1602
EcoRV GATATC 1 cut(s) 1921
EcoT14I CCWWGG 3 cut(s) 69, 535, 1578
EcoT38I GRGCYC 1 cut(s) 139
ErhI CCWWGG 3 cut(s) 69, 535, 1578
FaeI CATG 9 cut(s) 73, 251, 273, 753, 798, 851, 1021, 1312, 1582
FalI AAGNNNNNCTT 2 cut(s) 1521, 1553
FaqI GGGAC 3 cut(s) 495, 738, 839
FatI CATG 9 cut(s) 69, 247, 269, 749, 794, 847, 1017, 1308, 1578
FauI CCCGC 1 cut(s) 126
FbaI TGATCA 1 cut(s) 610
FokI GGATG 4 cut(s) 177, 299, 573, 1529
FriOI GRGCYC 1 cut(s) 139
FspBI CTAG 7 cut(s) 126, 858, 1298, 1407, 1502, 1584, 1691
GlaI GCGC 1 cut(s) 268
GsaI CCCAGC 1 cut(s) 1488
GsuI CTGGAG 5 cut(s) 671, 971, 1238, 1335, 1625
HaeIII GGCC 5 cut(s) 50, 540, 1415, 1577, 1725
HgaI GACGC 1 cut(s) 864
HhaI GCGC 1 cut(s) 269
Hin1II CATG 9 cut(s) 73, 251, 273, 753, 798, 851, 1021, 1312, 1582
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HindIII AAGCTT 4 cut(s) 192, 656, 899, 1648
HphI GGTGA 3 cut(s) 38, 620, 1630
Hpy166II GTNNAC 1 cut(s) 1760
Hpy188I TCNGA 7 cut(s) 325, 346, 443, 888, 1047, 1162, 1614
Hpy188III TCNNGA 8 cut(s) 162, 212, 380, 988, 1094, 1502, 1619, 1685
Hpy8I GTNNAC 1 cut(s) 1760
HpyAV CCTTC 7 cut(s) 132, 322, 413, 576, 886, 1148, 1419
HpyCH4III ACNGT 4 cut(s) 23, 830, 1271, 1862
HpyCH4IV ACGT 1 cut(s) 1449
HpyF10VI GCNNNNNNNGC 8 cut(s) 315, 455, 655, 1113, 1412, 1652, 1661, 1664
HpyF3I CTNAG 8 cut(s) 213, 305, 324, 1283, 1437, 1457, 1538, 1746
HpySE526I ACGT 1 cut(s) 1449
Hsp92II CATG 9 cut(s) 73, 251, 273, 753, 798, 851, 1021, 1312, 1582
HspAI GCGC 1 cut(s) 267
Ksp22I TGATCA 1 cut(s) 610
LguI GCTCTTC 1 cut(s) 257
LmnI GCTCC 5 cut(s) 104, 168, 306, 803, 1274
LweI GCATC 6 cut(s) 150, 321, 551, 1471, 1633, 1904
MaeI CTAG 7 cut(s) 126, 858, 1298, 1407, 1502, 1584, 1691
MaeII ACGT 1 cut(s) 1449
MaeIII GTNAC 7 cut(s) 26, 90, 526, 961, 1226, 1234, 1696
MfeI CAATTG 1 cut(s) 705
MflI RGATCY 3 cut(s) 231, 333, 410
MhlI GDGCHC 4 cut(s) 139, 677, 1436, 1770
MlsI TGGCCA 1 cut(s) 1577
MluNI TGGCCA 1 cut(s) 1577
MlyI GAGTC 3 cut(s) 152, 755, 1051
MmeI TCCRAC 3 cut(s) 442, 1185, 1879
Mox20I TGGCCA 1 cut(s) 1577
MroXI GAANNNNTTC 1 cut(s) 207
MscI TGGCCA 1 cut(s) 1577
MseI TTAA 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 1577
MspR9I CCNGG 5 cut(s) 11, 1353, 1392, 1412, 1604
MunI CAATTG 1 cut(s) 705
Mva1269I GAATGC 1 cut(s) 224
MvaI CCWGG 5 cut(s) 11, 1353, 1392, 1412, 1604
MwoI GCNNNNNNNGC 8 cut(s) 315, 455, 655, 1113, 1412, 1652, 1661, 1664
NcoI CCATGG 2 cut(s) 69, 1578
NheI GCTAGC 1 cut(s) 1406
NlaIII CATG 9 cut(s) 73, 251, 273, 753, 798, 851, 1021, 1312, 1582
NlaIV GGNNCC 3 cut(s) 49, 100, 466
NmeAIII GCCGAG 1 cut(s) 1097
NmuCI GTSAC 2 cut(s) 26, 90
NspI RCATGY 1 cut(s) 273
PciSI GCTCTTC 1 cut(s) 257
PctI GAATGC 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 8 cut(s) 512, 1314, 1489, 1534, 1615, 1710, 1718, 1849
PflMI CCANNNNNTGG 1 cut(s) 291
Ple19I CGATCG 1 cut(s) 1370
PleI GAGTC 3 cut(s) 152, 754, 1050
PpsI GAGTC 3 cut(s) 152, 754, 1050
Psp6I CCWGG 5 cut(s) 9, 1351, 1390, 1410, 1602
PspEI GGTNACC 1 cut(s) 1234
PspFI CCCAGC 1 cut(s) 1484
PspGI CCWGG 5 cut(s) 9, 1351, 1390, 1410, 1602
PspN4I GGNNCC 3 cut(s) 49, 100, 466
PspPI GGNCC 1 cut(s) 48
PstI CTGCAG 2 cut(s) 810, 1041
PstNI CAGNNNCTG 3 cut(s) 828, 1045, 1484
PsuI RGATCY 3 cut(s) 231, 333, 410
PvuI CGATCG 1 cut(s) 1370
RsaI GTAC 2 cut(s) 1338, 1864
RsaNI GTAC 2 cut(s) 1337, 1863
SapI GCTCTTC 1 cut(s) 257
SaqAI TTAA 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 48
SchI GAGTC 3 cut(s) 152, 755, 1051
ScrFI CCNGG 5 cut(s) 11, 1353, 1392, 1412, 1604
SduI GDGCHC 4 cut(s) 139, 677, 1436, 1770
SfaNI GCATC 6 cut(s) 150, 321, 551, 1471, 1633, 1904
SfcI CTRYAG 3 cut(s) 806, 1037, 1080
SmlI CTYRAG 3 cut(s) 572, 1029, 1202
SmoI CTYRAG 3 cut(s) 572, 1029, 1202
SsiI CCGC 5 cut(s) 107, 133, 241, 316, 1191
SspMI CTAG 7 cut(s) 126, 858, 1298, 1407, 1502, 1584, 1691
StyD4I CCNGG 5 cut(s) 9, 1351, 1390, 1410, 1602
StyI CCWWGG 3 cut(s) 69, 535, 1578
TaaI ACNGT 4 cut(s) 23, 830, 1271, 1862
TaiI ACGT 1 cut(s) 1452
TaqI TCGA 4 cut(s) 502, 1265, 1366, 1620
TatI WGTACW 1 cut(s) 1862
TauI GCSGC 2 cut(s) 244, 1193
TfiI GAWTC 8 cut(s) 512, 1314, 1489, 1534, 1615, 1710, 1718, 1849
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 6 cut(s) 28, 358, 677, 985, 1003, 1865
TseFI GTSAC 2 cut(s) 26, 90
Tsp45I GTSAC 2 cut(s) 26, 90
TspDTI ATGAA 2 cut(s) 387, 1578
TspGWI ACGGA 1 cut(s) 1730
TspRI CASTG 6 cut(s) 28, 358, 677, 985, 1003, 1865
Van91I CCANNNNNTGG 1 cut(s) 291
XapI RAATTY 4 cut(s) 152, 724, 1120, 1552
XbaI TCTAGA 1 cut(s) 1501
XceI RCATGY 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 7 cut(s) 126, 858, 1298, 1407, 1502, 1584, 1691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.