pycom15g15840

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011506
Physical Location & Seq
Forward (+)
11044942 .. 11047115
2174 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 687 bp
ATGGGGTTGGAGAACACCTCTCGACGCGGCGGCGGGATTGAAAACAGCAGCAAGGGCTACGAGACACAGGTGGTGTTGAATGTCTACGACCTCACCCCCCTCAATAATTACACCGTCTGGTTCGGTCTCGGAATCTTTCACTCCGGTATTGAAGTCCATGGCAAAGAGTATGGTTTTGGAGCCCATGACTTCCCAGTTAGTGGAGTTTTTGAAGTGGAACCAAGGAGCTGCCCAGGTTTCATTTATCGATGTTCCGTTCAACTTGGCCGTATAAATATGCCTCCTTCTGAATTTAGGACATTTATTGAGCATGTTGCGGCAGAGTATCATGGGGATACCTATCACCTCATCTCCAAGAATTGTAACCATTTCACGGATGACATGGCTCGTAGGTTGACAGAAAAACAGGTTCCTGGATGGGTGAATCGACTTGCTCGCCTAGGTGCCTTGTGCAGTTGTCTTCTTCCCGAAAGCCTTCAAGTGACCACTGTTAAACAGATACCCGAATACCATCATGAGTCAGATTCTCTAGAAGAAGATGGTACTGAAACCCTATCAATCACAACGCCTCGTATGTCAGCGGAAGTTGATGATGATCAAGAAAAACGCCTGCTGTCTCCACTGGCTTCACTTTCACCGGTGGCGGGAAGTGGAGATGTAACTTTCGTTAAAGAGGCTCAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

229

Amino Acids

25.37

Weight (kDa)

5.25

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 23 - 157 6.9e-48 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 443
AccB7I CCANNNNNTGG 1 cut(s) 200
AccI GTMKAC 1 cut(s) 84
AccII CGCG 1 cut(s) 27
AciI CCGC 6 cut(s) 27, 30, 33, 317, 581, 644
AcoI YGGCCR 1 cut(s) 265
AcsI RAATTY 1 cut(s) 290
AfaI GTAC 1 cut(s) 544
AfiI CCNNNNNNNGG 3 cut(s) 200, 373, 644
AgeI ACCGGT 1 cut(s) 637
AgsI TTSAA 6 cut(s) 41, 79, 152, 212, 260, 479
AjnI CCWGG 2 cut(s) 232, 412
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw26I GTCTC 3 cut(s) 56, 131, 621
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 48, 228
ApoI RAATTY 1 cut(s) 290
AsiGI ACCGGT 1 cut(s) 637
Asp700I GAANNNNTTC 1 cut(s) 474
AspA2I CCTAGG 1 cut(s) 439
AsuHPI GGTGA 4 cut(s) 85, 335, 433, 627
AvrII CCTAGG 1 cut(s) 439
BanI GGYRCC 1 cut(s) 443
BanII GRGCYC 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 452
BbvI GCAGC 2 cut(s) 60, 215
BccI CCATC 3 cut(s) 411, 519, 533
BceAI ACGGC 1 cut(s) 252
BciT130I CCWGG 2 cut(s) 234, 414
BciVI GTATCC 1 cut(s) 328
BclI TGATCA 1 cut(s) 595
BcoDI GTCTC 3 cut(s) 56, 131, 621
BfaI CTAG 2 cut(s) 440, 530
BfuI GTATCC 1 cut(s) 328
BisI GCNGC 5 cut(s) 28, 31, 49, 229, 318
BlnI CCTAGG 1 cut(s) 439
BlsI GCNGC 5 cut(s) 29, 32, 50, 230, 319
Bme1390I CCNGG 2 cut(s) 234, 414
BmiI GGNNCC 4 cut(s) 181, 219, 411, 445
BmrFI CCNGG 2 cut(s) 234, 414
BmrI ACTGGG 1 cut(s) 188
BmuI ACTGGG 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 452
BplI GAGNNNNNCTC 1 cut(s) 34
Bsa29I ATCGAT 1 cut(s) 247
BsaBI GATNNNNATC 2 cut(s) 339, 594
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 4 cut(s) 157, 221, 232, 439
BsaWI WCCGGW 2 cut(s) 143, 637
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 373, 644
Bse118I RCCGGY 1 cut(s) 637
Bse1I ACTGG 2 cut(s) 194, 627
Bse8I GATNNNNATC 2 cut(s) 339, 594
BseBI CCWGG 2 cut(s) 234, 414
BseCI ATCGAT 1 cut(s) 247
BseDI CCNNGG 4 cut(s) 157, 221, 232, 439
BseGI GGATG 2 cut(s) 382, 422
BseJI GATNNNNATC 2 cut(s) 339, 594
BseLI CCNNNNNNNGG 3 cut(s) 200, 373, 644
BseNI ACTGG 2 cut(s) 194, 627
BseXI GCAGC 2 cut(s) 60, 215
BsgI GTGCAG 1 cut(s) 472
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 267
BshNI GGYRCC 1 cut(s) 443
BshTI ACCGGT 1 cut(s) 637
BshVI ATCGAT 1 cut(s) 247
BsiSI CCGG 2 cut(s) 144, 638
BslI CCNNNNNNNGG 3 cut(s) 200, 373, 644
BsmAI GTCTC 3 cut(s) 56, 131, 621
BsnI GGCC 1 cut(s) 267
Bso31I GGTCTC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 1 cut(s) 595
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 6 cut(s) 27, 30, 33, 317, 581, 644
BspANI GGCC 1 cut(s) 267
BspDI ATCGAT 1 cut(s) 247
BspFNI CGCG 1 cut(s) 27
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 4 cut(s) 181, 219, 411, 445
BspT107I GGYRCC 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 637
BsrI ACTGG 2 cut(s) 194, 627
BssAI RCCGGY 1 cut(s) 637
BssECI CCNNGG 4 cut(s) 157, 221, 232, 439
BssMI GATC 1 cut(s) 595
BssT1I CCWWGG 3 cut(s) 157, 221, 439
Bst2UI CCWGG 2 cut(s) 234, 414
Bst4CI ACNGT 2 cut(s) 115, 490
BstC8I GCNNGC 2 cut(s) 436, 611
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 2 cut(s) 382, 422
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 1 cut(s) 598
BstMAI GTCTC 3 cut(s) 56, 131, 621
BstMBI GATC 1 cut(s) 595
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 2 cut(s) 234, 414
BstNSI RCATGY 1 cut(s) 314
BstSCI CCNGG 2 cut(s) 232, 412
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 60, 215
BstV2I GAAGAC 1 cut(s) 452
Bsu15I ATCGAT 1 cut(s) 247
BsuI GTATCC 1 cut(s) 328
BsuRI GGCC 1 cut(s) 267
BsuTUI ATCGAT 1 cut(s) 247
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 2 cut(s) 382, 422
BtsIMutI CAGTG 2 cut(s) 486, 620
Cac8I GCNNGC 2 cut(s) 436, 611
CciI TCATGA 1 cut(s) 514
Cfr10I RCCGGY 1 cut(s) 637
ClaI ATCGAT 1 cut(s) 247
CseI GACGC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 543
CspAI ACCGGT 1 cut(s) 637
CviAII CATG 6 cut(s) 158, 185, 311, 329, 382, 515
CviJI RGCY 8 cut(s) 57, 182, 228, 267, 386, 474, 626, 677
CviKI_1 RGCY 8 cut(s) 57, 182, 228, 267, 386, 474, 626, 677
CviQI GTAC 1 cut(s) 543
DpnI GATC 1 cut(s) 597
DpnII GATC 1 cut(s) 595
EaeI YGGCCR 1 cut(s) 265
Eco130I CCWWGG 3 cut(s) 157, 221, 439
Eco24I GRGCYC 1 cut(s) 184
Eco31I GGTCTC 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 232, 412
EcoT14I CCWWGG 3 cut(s) 157, 221, 439
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 3 cut(s) 157, 221, 439
FaeI CATG 6 cut(s) 161, 188, 314, 332, 385, 518
FatI CATG 6 cut(s) 157, 184, 310, 328, 381, 514
FauI CCCGC 2 cut(s) 26, 637
FbaI TGATCA 1 cut(s) 595
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 5 cut(s) 28, 31, 49, 229, 318
FokI GGATG 2 cut(s) 389, 429
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 5 cut(s) 28, 31, 49, 229, 318
FspBI CTAG 2 cut(s) 440, 530
GluI GCNGC 5 cut(s) 28, 31, 49, 229, 318
HaeIII GGCC 1 cut(s) 267
HapII CCGG 2 cut(s) 144, 638
HgaI GACGC 1 cut(s) 33
Hin1II CATG 6 cut(s) 161, 188, 314, 332, 385, 518
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 4 cut(s) 132, 424, 518, 524
HpaII CCGG 2 cut(s) 144, 638
HphI GGTGA 4 cut(s) 85, 335, 433, 627
Hpy166II GTNNAC 2 cut(s) 85, 396
Hpy188I TCNGA 3 cut(s) 131, 289, 523
Hpy188III TCNNGA 5 cut(s) 21, 467, 515, 530, 599
Hpy8I GTNNAC 2 cut(s) 85, 396
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 2 cut(s) 294, 485
HpyCH4III ACNGT 2 cut(s) 115, 490
HpyCH4V TGCA 1 cut(s) 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
Hsp92II CATG 6 cut(s) 161, 188, 314, 332, 385, 518
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 1 cut(s) 595
LmnI GCTCC 2 cut(s) 179, 225
Lsp1109I GCAGC 2 cut(s) 60, 215
MaeI CTAG 2 cut(s) 440, 530
MaeIII GTNAC 3 cut(s) 362, 481, 658
MalI GATC 1 cut(s) 597
MboI GATC 1 cut(s) 595
MboII GAAGA 4 cut(s) 452, 455, 545, 548
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 3 cut(s) 106, 290, 358
MlyI GAGTC 1 cut(s) 527
MnlI CCTC 7 cut(s) 28, 101, 110, 291, 356, 579, 667
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 2 cut(s) 492, 669
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 2 cut(s) 144, 638
MspR9I CCNGG 2 cut(s) 234, 414
MvaI CCWGG 2 cut(s) 234, 414
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 54
NcoI CCATGG 1 cut(s) 157
NdeII GATC 1 cut(s) 595
NlaIII CATG 6 cut(s) 161, 188, 314, 332, 385, 518
NlaIV GGNNCC 4 cut(s) 181, 219, 411, 445
NmuCI GTSAC 1 cut(s) 481
NspI RCATGY 1 cut(s) 314
PagI TCATGA 1 cut(s) 514
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 3 cut(s) 132, 424, 524
PflMI CCANNNNNTGG 1 cut(s) 200
PfoI TCCNGGA 1 cut(s) 412
PinAI ACCGGT 1 cut(s) 637
PkrI GCNGC 5 cut(s) 29, 32, 50, 230, 319
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
Psp6I CCWGG 2 cut(s) 232, 412
PspGI CCWGG 2 cut(s) 232, 412
PspN4I GGNNCC 4 cut(s) 181, 219, 411, 445
RsaI GTAC 1 cut(s) 544
RsaNI GTAC 1 cut(s) 543
SaqAI TTAA 2 cut(s) 492, 669
SatI GCNGC 5 cut(s) 28, 31, 49, 229, 318
Sau3AI GATC 1 cut(s) 595
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 2 cut(s) 234, 414
SduI GDGCHC 1 cut(s) 184
SgrAI CRCCGGYG 1 cut(s) 637
Sse9I AATT 3 cut(s) 106, 290, 358
SsiI CCGC 6 cut(s) 27, 30, 33, 317, 581, 644
SspMI CTAG 2 cut(s) 440, 530
StyD4I CCNGG 2 cut(s) 232, 412
StyI CCWWGG 3 cut(s) 157, 221, 439
TaaI ACNGT 2 cut(s) 115, 490
TaqI TCGA 3 cut(s) 22, 247, 427
TaqII GACCGA 1 cut(s) 113
TasI AATT 3 cut(s) 106, 290, 358
TauI GCSGC 3 cut(s) 30, 33, 320
TfiI GAWTC 3 cut(s) 132, 424, 524
Tru1I TTAA 2 cut(s) 492, 669
Tru9I TTAA 2 cut(s) 492, 669
TscAI CASTG 2 cut(s) 493, 627
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 2 cut(s) 48, 228
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 1 cut(s) 229
TspGWI ACGGA 2 cut(s) 244, 389
TspRI CASTG 2 cut(s) 493, 627
Van91I CCANNNNNTGG 1 cut(s) 200
XapI RAATTY 1 cut(s) 290
XbaI TCTAGA 1 cut(s) 529
XceI RCATGY 1 cut(s) 314
XmaJI CCTAGG 1 cut(s) 439
XmiI GTMKAC 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 474
XspI CTAG 2 cut(s) 440, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.