pycom15g18200

Fanconi Anaemia group E protein FANCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014432
Physical Location & Seq
Reverse (-)
12907151 .. 12907957
807 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 807 bp
ATGGTTCAGTCGCGAATTCTGTCGTTTCTGGATTTTGAACATCAAGGGTTTTGCGGTCGGGACTTGGCGAGGTTGGCGAGGACTGTTTTGAGTGGAAGTCAGGAGCTTGATTTATGGGTTCAGAGGGCTGCACGCAATCTGCTCGATGGAATGTCTGAGTCAAGTTATGATTGGATTAATTGCTTGAGTTTGGAGTCCGTCGAGGATGCGTTTGAGTCCTTGCCTAGGTGGCTTAAGGACTCCGTGGCTTCCAGTGATCTGGTCCTACCATGGCTTCCTATATTGCCTGAGGAATTGAATTCGAGGACAATGAGTGGTAATTGTGAAAACTATGATGGCTCGTCGAGTCAAGTTGGAGAGGATGAAGGCATGTTTATGAATGATTTTCTGGAGGAAATGAATATTGACGACCCAGTTAGCATTCATCTTGAACCTGAAATTCAAAAAGCGGCAGTTAATTTGAAAGCTCAGGTTGCCGATTTTCAATCAACTTCTAAAACCGTAGGCTTAGCGAATGAAATTCGTGAACTTTGCTTGGACAAAGGAGGAGATTCTTTGACGATTTCGGGATTGATTGAACCTTGGTTAGCTGACGATGAGATTGCTTCAGTTGTACTTTCTCATCTAACAAGCAGAAGCAAAGAAGAGCTTACTTGGTCAAGCCAGGTTTTGTGCTCGGTCATCCTTCCCAAGTTGTTGGTGCTTGAGGAACCAGCTTCTCGAGTATTAGTGACTGCAATGGTGGAGTACCGCAAGCTTCATCAAGGGGCCTGTGAATATGCACTCTTATTTCAACTGATTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
FA_FANCE

Protein Analysis

269

Amino Acids

29.9

Weight (kDa)

4.39

Isoelectric Point (pI)

57.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29560
fragaria_vesca FvH4_1g07200
malus_domestica MD02G1076500.v1.1 MD15G1205200.v1.1
prunus_persica Prupe.7G211900_v2.0.a1
pyrus_communis pycom02g06080 pycom15g18200
rosa_chinensis RchiOBHm_Chr2g0093101
rosa_laevigata RLG00000016368
rosa_multiflora Rmu_sc0006865.1_g000010
rosa_roxburghii Rroxscaffold_2G00148510
rosa_rugosa Rorug02G0032800
rosa_samantha Rh2AG078100 Rh2BG079400 Rh2CG081800 Rh2DG077100
rosa_wichuraiana Rw2G006820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 13
AciI CCGC 3 cut(s) 54, 449, 751
AcsI RAATTY 4 cut(s) 15, 298, 438, 519
AcuI CTGAAG 1 cut(s) 591
AfaI GTAC 2 cut(s) 615, 749
AfiI CCNNNNNNNGG 1 cut(s) 225
AflII CTTAAG 1 cut(s) 233
AgsI TTSAA 8 cut(s) 38, 298, 431, 443, 463, 485, 578, 794
AjnI CCWGG 1 cut(s) 663
AluBI AGCT 6 cut(s) 106, 467, 590, 649, 716, 757
AluI AGCT 6 cut(s) 106, 467, 590, 649, 716, 757
Alw21I GWGCWC 1 cut(s) 677
Ama87I CYCGRG 1 cut(s) 720
AoxI GGCC 1 cut(s) 768
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 4 cut(s) 15, 298, 438, 519
AseI ATTAAT 1 cut(s) 177
AspA2I CCTAGG 1 cut(s) 224
AspS9I GGNCC 2 cut(s) 262, 768
AvaI CYCGRG 1 cut(s) 720
AvaII GGWCC 1 cut(s) 262
AvrII CCTAGG 1 cut(s) 224
AxyI CCTNAGG 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 677
BbvI GCAGC 1 cut(s) 115
BccI CCATC 2 cut(s) 140, 329
BcgI CGANNNNNNTGC 4 cut(s) 124, 158, 584, 618
BciT130I CCWGG 1 cut(s) 665
BfaI CTAG 1 cut(s) 225
BfrI CTTAAG 1 cut(s) 233
BglI GCCNNNNNGGC 1 cut(s) 229
BisI GCNGC 2 cut(s) 129, 450
BlnI CCTAGG 1 cut(s) 224
BlpI GCTNAGC 1 cut(s) 508
BlsI GCNGC 2 cut(s) 130, 451
Bme1390I CCNGG 1 cut(s) 665
Bme18I GGWCC 1 cut(s) 262
BmeT110I CYCGRG 1 cut(s) 720
BmgT120I GGNCC 2 cut(s) 262, 768
BmiI GGNNCC 2 cut(s) 711, 769
BmrFI CCNGG 1 cut(s) 665
BmrI ACTGGG 1 cut(s) 407
BmsI GCATC 1 cut(s) 196
BmuI ACTGGG 1 cut(s) 407
BpmI CTGGAG 1 cut(s) 410
Bpu10I CCTNAGC 1 cut(s) 468
Bpu1102I GCTNAGC 1 cut(s) 508
BpuEI CTTGAG 2 cut(s) 205, 725
BsaJI CCNNGG 4 cut(s) 224, 243, 269, 581
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 252, 413
Bse21I CCTNAGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 744
BseBI CCWGG 1 cut(s) 665
BseDI CCNNGG 4 cut(s) 224, 243, 269, 581
BseGI GGATG 3 cut(s) 211, 367, 681
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMI GCAATG 1 cut(s) 744
BseMII CTCAG 3 cut(s) 147, 279, 482
BseNI ACTGG 2 cut(s) 252, 413
BseRI GAGGAG 1 cut(s) 561
BseXI GCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 13
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 1 cut(s) 770
BsiEI CGRYCG 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 677
BsiHKCI CYCGRG 1 cut(s) 720
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 74
BsmI GAATGC 1 cut(s) 420
BsnI GGCC 1 cut(s) 770
BsoBI CYCGRG 1 cut(s) 720
Bsp1286I GDGCHC 1 cut(s) 677
Bsp143I GATC 1 cut(s) 256
Bsp1720I GCTNAGC 1 cut(s) 508
Bsp19I CCATGG 1 cut(s) 269
Bsp68I TCGCGA 1 cut(s) 13
BspACI CCGC 3 cut(s) 54, 449, 751
BspANI GGCC 1 cut(s) 770
BspCNI CTCAG 3 cut(s) 148, 280, 481
BspFNI CGCG 1 cut(s) 13
BspLI GGNNCC 2 cut(s) 711, 769
BspQI GCTCTTC 1 cut(s) 639
BspTI CTTAAG 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 744
BsrI ACTGG 2 cut(s) 252, 413
BssECI CCNNGG 4 cut(s) 224, 243, 269, 581
BssMI GATC 1 cut(s) 256
BssT1I CCWWGG 3 cut(s) 224, 269, 581
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 2 cut(s) 85, 502
Bst6I CTCTTC 1 cut(s) 639
BstAFI CTTAAG 1 cut(s) 233
BstC8I GCNNGC 2 cut(s) 133, 755
BstDEI CTNAG 4 cut(s) 156, 288, 468, 508
BstDSI CCRYGG 2 cut(s) 243, 269
BstENI CCTNNNNNAGG 1 cut(s) 223
BstF5I GGATG 3 cut(s) 211, 367, 681
BstFNI CGCG 1 cut(s) 13
BstKTI GATC 1 cut(s) 259
BstMBI GATC 1 cut(s) 256
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 3 cut(s) 74, 229, 473
BstNI CCWGG 1 cut(s) 665
BstNSI RCATGY 1 cut(s) 373
BstSCI CCNGG 1 cut(s) 663
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 115
BstXI CCANNNNNNTGG 2 cut(s) 259, 697
Bsu36I CCTNAGG 1 cut(s) 288
BsuRI GGCC 1 cut(s) 770
BtgI CCRYGG 2 cut(s) 243, 269
BtsCI GGATG 3 cut(s) 211, 367, 681
BtsIMutI CAGTG 1 cut(s) 259
BtuMI TCGCGA 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 133, 755
Cfr13I GGNCC 2 cut(s) 262, 768
Csp6I GTAC 2 cut(s) 614, 748
CviAII CATG 2 cut(s) 270, 370
CviQI GTAC 2 cut(s) 614, 748
DdeI CTNAG 4 cut(s) 156, 288, 468, 508
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Eco130I CCWWGG 3 cut(s) 224, 269, 581
Eco47I GGWCC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 591
Eco81I CCTNAGG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 720
EcoNI CCTNNNNNAGG 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 768
EcoRI GAATTC 2 cut(s) 15, 298
EcoRII CCWGG 1 cut(s) 663
EcoT14I CCWWGG 3 cut(s) 224, 269, 581
ErhI CCWWGG 3 cut(s) 224, 269, 581
FaeI CATG 2 cut(s) 273, 373
FaiI YATR 8 cut(s) 115, 168, 271, 281, 333, 371, 377, 780
FalI AAGNNNNNCTT 2 cut(s) 633, 665
FaqI GGGAC 1 cut(s) 74
FatI CATG 2 cut(s) 269, 369
Fnu4HI GCNGC 2 cut(s) 129, 450
FokI GGATG 3 cut(s) 218, 374, 668
Fsp4HI GCNGC 2 cut(s) 129, 450
FspBI CTAG 1 cut(s) 225
GluI GCNGC 2 cut(s) 129, 450
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 1 cut(s) 770
Hin1II CATG 2 cut(s) 273, 373
HindIII AAGCTT 1 cut(s) 755
HinfI GANTC 7 cut(s) 158, 194, 215, 239, 346, 551, 799
Hpy166II GTNNAC 1 cut(s) 527
Hpy188I TCNGA 2 cut(s) 123, 157
Hpy188III TCNNGA 9 cut(s) 12, 29, 59, 101, 389, 428, 524, 567, 720
Hpy8I GTNNAC 1 cut(s) 527
Hpy99I CGWCG 2 cut(s) 203, 346
HpyAV CCTTC 2 cut(s) 359, 695
HpyCH4III ACNGT 2 cut(s) 85, 502
HpyCH4V TGCA 3 cut(s) 131, 737, 782
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 229, 473
HpyF3I CTNAG 4 cut(s) 156, 288, 468, 508
Hsp92II CATG 2 cut(s) 273, 373
Kzo9I GATC 1 cut(s) 256
LguI GCTCTTC 1 cut(s) 639
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 730
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 1 cut(s) 656
MhlI GDGCHC 1 cut(s) 677
MluCI AATT 8 cut(s) 15, 178, 293, 298, 319, 438, 457, 519
MlyI GAGTC 5 cut(s) 167, 203, 224, 233, 355
MmeI TCCRAC 1 cut(s) 334
MseI TTAA 3 cut(s) 177, 234, 456
MslI CAYNNNNRTG 1 cut(s) 374
MspCI CTTAAG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 665
Mva1269I GAATGC 1 cut(s) 420
MvaI CCWGG 1 cut(s) 665
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 3 cut(s) 74, 229, 473
NcoI CCATGG 1 cut(s) 269
NdeII GATC 1 cut(s) 256
NlaIII CATG 2 cut(s) 273, 373
NlaIV GGNNCC 2 cut(s) 711, 769
NmuCI GTSAC 1 cut(s) 730
NruI TCGCGA 1 cut(s) 13
NspI RCATGY 1 cut(s) 373
PaeR7I CTCGAG 1 cut(s) 720
PciSI GCTCTTC 1 cut(s) 639
PctI GAATGC 1 cut(s) 420
PfeI GAWTC 2 cut(s) 551, 799
PkrI GCNGC 2 cut(s) 130, 451
PleI GAGTC 5 cut(s) 166, 202, 223, 233, 354
PpsI GAGTC 5 cut(s) 166, 202, 223, 233, 354
PshBI ATTAAT 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 663
PspGI CCWGG 1 cut(s) 663
PspN4I GGNNCC 2 cut(s) 711, 769
PspPI GGNCC 2 cut(s) 262, 768
RruI TCGCGA 1 cut(s) 13
RsaI GTAC 2 cut(s) 615, 749
RsaNI GTAC 2 cut(s) 614, 748
RseI CAYNNNNRTG 1 cut(s) 374
SapI GCTCTTC 1 cut(s) 639
SaqAI TTAA 3 cut(s) 177, 234, 456
SatI GCNGC 2 cut(s) 129, 450
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 2 cut(s) 262, 768
SchI GAGTC 5 cut(s) 167, 203, 224, 233, 355
ScrFI CCNGG 1 cut(s) 665
SduI GDGCHC 1 cut(s) 677
SfaNI GCATC 1 cut(s) 196
Sfr274I CTCGAG 1 cut(s) 720
SinI GGWCC 1 cut(s) 262
SlaI CTCGAG 1 cut(s) 720
SmiMI CAYNNNNRTG 1 cut(s) 374
SmlI CTYRAG 4 cut(s) 184, 233, 704, 720
SmoI CTYRAG 4 cut(s) 184, 233, 704, 720
Sse9I AATT 8 cut(s) 15, 178, 293, 298, 319, 438, 457, 519
SsiI CCGC 3 cut(s) 54, 449, 751
SspI AATATT 1 cut(s) 403
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 663
StyI CCWWGG 3 cut(s) 224, 269, 581
TaaI ACNGT 2 cut(s) 85, 502
TaqI TCGA 5 cut(s) 144, 201, 302, 344, 721
TaqII GACCGA 1 cut(s) 667
TasI AATT 8 cut(s) 15, 178, 293, 298, 319, 438, 457, 519
TatI WGTACW 1 cut(s) 613
TauI GCSGC 1 cut(s) 452
TfiI GAWTC 2 cut(s) 551, 799
Tru1I TTAA 3 cut(s) 177, 234, 456
Tru9I TTAA 3 cut(s) 177, 234, 456
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 6 cut(s) 378, 392, 413, 413, 531, 749
TspGWI ACGGA 2 cut(s) 187, 232
TspRI CASTG 1 cut(s) 259
Vha464I CTTAAG 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 262
VspI ATTAAT 1 cut(s) 177
XagI CCTNNNNNAGG 1 cut(s) 223
XapI RAATTY 4 cut(s) 15, 298, 438, 519
XceI RCATGY 1 cut(s) 373
XhoI CTCGAG 1 cut(s) 720
XmaJI CCTAGG 1 cut(s) 224
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.