pycom15g18850

Cleavage and polyadenylation specificity factor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012542
Physical Location & Seq
Reverse (-)
13375572 .. 13377177
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 666 bp
ATGGGGGATGAAAGGGGTTCCTCACACGTGTCAGACAGTAACAGTCTTGATCACCACGACAACGATGATCAGAGCCGTACGCTGGACATATACCCTCTCAGCAGCTACTACTTCGCTTCCAAGGAAGCCATTCCTGTCAAGGACGAAACTCCAGCTGATCGTCTTCACAGATTGAAGTCCAATTATGCTGCTTATGGATTGAGGACTTGTGTGGAAGCAGTTATTCTGGTTGAGTTGTTCAAACATCCTCATGTGCTGCTCTTGCAAATAAGAAACTGCATTTTTAAGCTTCCCGGGGGTCGCTTAAGACCCGGCGAATCAGAGATGGACGGATTGAAACGTAAGCTGTCGAGGAAGCTTTGTATCAATGCAGATGGTGATGGGATTCCTTGGGAGGTTGGGGAGTGTCTTGGGGTATGGTGGAGGCACGACTTCGAAACATTGCTCTGTCGAGACTTGCCACCTCGAGTTGAAAACCCAAAGGAGTGCACCAAACTATTCATCGTGAAGTTACCAGATTGTCGGAAGTTCATTGCGCCAAAAAACCAAAAATTGCTCGCTATTCCCTTGTGCCAGATCGCCAAAAACAACGAGACGTATGGACCTGTTATATCAGGTGTTCCGGAGATGCTATCAACGTTTACCATCAACATTATAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
NUDIX_2

Protein Analysis

222

Amino Acids

25.06

Weight (kDa)

6.39

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX_2 PF13869 27 - 214 1.5e-65 Nucleotide hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 622
AclI AACGTT 1 cut(s) 638
AcvI CACGTG 1 cut(s) 28
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 82
AflII CTTAAG 1 cut(s) 304
AflIII ACRYGT 2 cut(s) 25, 27
AgsI TTSAA 4 cut(s) 175, 241, 337, 473
AluBI AGCT 5 cut(s) 105, 155, 289, 346, 358
AluI AGCT 5 cut(s) 105, 155, 289, 346, 358
Alw21I GWGCWC 1 cut(s) 491
Alw26I GTCTC 2 cut(s) 447, 587
Alw44I GTGCAC 1 cut(s) 487
Ama87I CYCGRG 2 cut(s) 293, 465
Aor13HI TCCGGA 1 cut(s) 622
ApaLI GTGCAC 1 cut(s) 487
ApeKI GCWGC 3 cut(s) 102, 188, 256
Asp700I GAANNNNTTC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 1 cut(s) 602
AsuC2I CCSGG 3 cut(s) 294, 295, 312
AsuHPI GGTGA 2 cut(s) 44, 389
AsuII TTCGAA 1 cut(s) 435
AvaI CYCGRG 2 cut(s) 293, 465
AvaII GGWCC 1 cut(s) 602
BaeGI GKGCMC 1 cut(s) 491
BbrPI CACGTG 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 491
BbvI GCAGC 3 cut(s) 114, 175, 243
BccI CCATC 4 cut(s) 319, 368, 374, 653
BceAI ACGGC 1 cut(s) 60
BclI TGATCA 2 cut(s) 49, 67
BcnI CCSGG 3 cut(s) 294, 295, 312
BcoDI GTCTC 2 cut(s) 447, 587
BfrI CTTAAG 1 cut(s) 304
BisI GCNGC 3 cut(s) 103, 189, 257
BlsI GCNGC 3 cut(s) 104, 190, 258
Bme1390I CCNGG 3 cut(s) 294, 295, 312
Bme18I GGWCC 1 cut(s) 602
BmeT110I CYCGRG 2 cut(s) 293, 465
BmgT120I GGNCC 1 cut(s) 602
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 3 cut(s) 294, 295, 312
BmsI GCATC 1 cut(s) 618
BpiI GAAGAC 1 cut(s) 155
BpmI CTGGAG 1 cut(s) 135
Bpu14I TTCGAA 1 cut(s) 435
BpuMI CCSGG 3 cut(s) 294, 295, 312
BsaAI YACGTR 1 cut(s) 28
BsaJI CCNNGG 4 cut(s) 120, 293, 294, 389
BsaWI WCCGGW 1 cut(s) 622
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse3DI GCAATG 2 cut(s) 440, 531
BseAI TCCGGA 1 cut(s) 622
BseDI CCNNGG 4 cut(s) 120, 293, 294, 389
BseGI GGATG 2 cut(s) 13, 244
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMI GCAATG 2 cut(s) 440, 531
BseMII CTCAG 1 cut(s) 112
BseSI GKGCMC 1 cut(s) 491
BseXI GCAGC 3 cut(s) 114, 175, 243
BsiHKAI GWGCWC 1 cut(s) 491
BsiHKCI CYCGRG 2 cut(s) 293, 465
BsiSI CCGG 3 cut(s) 294, 312, 623
BsiWI CGTACG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 2 cut(s) 447, 587
BsmBI CGTCTC 1 cut(s) 587
BsoBI CYCGRG 2 cut(s) 293, 465
Bsp119I TTCGAA 1 cut(s) 435
Bsp1286I GDGCHC 1 cut(s) 491
Bsp13I TCCGGA 1 cut(s) 622
Bsp143I GATC 4 cut(s) 49, 67, 157, 576
BspCNI CTCAG 1 cut(s) 111
BspEI TCCGGA 1 cut(s) 622
BspLI GGNNCC 1 cut(s) 19
BspT104I TTCGAA 1 cut(s) 435
BspTI CTTAAG 1 cut(s) 304
BsrDI GCAATG 2 cut(s) 440, 531
BssECI CCNNGG 4 cut(s) 120, 293, 294, 389
BssMI GATC 4 cut(s) 49, 67, 157, 576
BssT1I CCWWGG 2 cut(s) 120, 389
Bst4CI ACNGT 2 cut(s) 38, 44
BstAFI CTTAAG 1 cut(s) 304
BstBAI YACGTR 1 cut(s) 28
BstBI TTCGAA 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 1 cut(s) 98
BstF5I GGATG 2 cut(s) 13, 244
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 4 cut(s) 52, 70, 160, 579
BstMAI GTCTC 2 cut(s) 447, 587
BstMBI GATC 4 cut(s) 49, 67, 157, 576
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstSCI CCNGG 3 cut(s) 292, 293, 310
BstSLI GKGCMC 1 cut(s) 491
BstV1I GCAGC 3 cut(s) 114, 175, 243
BstV2I GAAGAC 1 cut(s) 155
BtsCI GGATG 2 cut(s) 13, 244
Cac8I GCNNGC 1 cut(s) 558
CfoI GCGC 1 cut(s) 538
Cfr13I GGNCC 1 cut(s) 602
Cfr9I CCCGGG 1 cut(s) 293
Csp6I GTAC 1 cut(s) 78
CviAII CATG 1 cut(s) 251
CviJI RGCY 7 cut(s) 75, 105, 128, 155, 289, 346, 358
CviKI_1 RGCY 7 cut(s) 75, 105, 128, 155, 289, 346, 358
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 1 cut(s) 98
DpnI GATC 4 cut(s) 51, 69, 159, 578
DpnII GATC 4 cut(s) 49, 67, 157, 576
Eco130I CCWWGG 2 cut(s) 120, 389
Eco47I GGWCC 1 cut(s) 602
Eco72I CACGTG 1 cut(s) 28
Eco88I CYCGRG 2 cut(s) 293, 465
EcoT14I CCWWGG 2 cut(s) 120, 389
ErhI CCWWGG 2 cut(s) 120, 389
Esp3I CGTCTC 1 cut(s) 587
FaeI CATG 1 cut(s) 254
FaiI YATR 9 cut(s) 89, 91, 186, 195, 252, 418, 600, 611, 656
FatI CATG 1 cut(s) 250
FbaI TGATCA 2 cut(s) 49, 67
Fnu4HI GCNGC 3 cut(s) 103, 189, 257
FokI GGATG 2 cut(s) 20, 231
Fsp4HI GCNGC 3 cut(s) 103, 189, 257
GlaI GCGC 1 cut(s) 537
GluI GCNGC 3 cut(s) 103, 189, 257
GsuI CTGGAG 1 cut(s) 135
HapII CCGG 3 cut(s) 294, 312, 623
HhaI GCGC 1 cut(s) 538
Hin1II CATG 1 cut(s) 254
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HindIII AAGCTT 2 cut(s) 287, 356
HinfI GANTC 2 cut(s) 317, 385
HpaII CCGG 3 cut(s) 294, 312, 623
HphI GGTGA 2 cut(s) 44, 389
Hpy166II GTNNAC 2 cut(s) 489, 642
Hpy188I TCNGA 4 cut(s) 34, 72, 322, 525
Hpy188III TCNNGA 4 cut(s) 47, 452, 505, 623
Hpy8I GTNNAC 2 cut(s) 489, 642
HpyCH4III ACNGT 2 cut(s) 38, 44
HpyCH4IV ACGT 4 cut(s) 27, 340, 596, 638
HpyCH4V TGCA 4 cut(s) 265, 279, 371, 489
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 4 cut(s) 27, 340, 596, 638
Hsp92II CATG 1 cut(s) 254
HspAI GCGC 1 cut(s) 536
Kpn2I TCCGGA 1 cut(s) 622
Ksp22I TGATCA 2 cut(s) 49, 67
Kzo9I GATC 4 cut(s) 49, 67, 157, 576
Lsp1109I GCAGC 3 cut(s) 114, 175, 243
LweI GCATC 1 cut(s) 618
MaeII ACGT 4 cut(s) 27, 340, 596, 638
MaeIII GTNAC 2 cut(s) 38, 510
MalI GATC 4 cut(s) 51, 69, 159, 578
MboI GATC 4 cut(s) 49, 67, 157, 576
MboII GAAGA 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 491
MluCI AATT 2 cut(s) 181, 551
MmeI TCCRAC 1 cut(s) 503
MnlI CCTC 8 cut(s) 31, 105, 195, 258, 345, 388, 417, 474
MroI TCCGGA 1 cut(s) 622
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 3 cut(s) 285, 305, 664
MslI CAYNNNNRTG 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 155
MspCI CTTAAG 1 cut(s) 304
MspI CCGG 3 cut(s) 294, 312, 623
MspR9I CCNGG 3 cut(s) 294, 295, 312
MwoI GCNNNNNNNGC 1 cut(s) 262
NciI CCSGG 3 cut(s) 294, 295, 312
NdeII GATC 4 cut(s) 49, 67, 157, 576
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 1 cut(s) 19
NspV TTCGAA 1 cut(s) 435
PaeR7I CTCGAG 1 cut(s) 465
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 2 cut(s) 317, 385
Pfl23II CGTACG 1 cut(s) 77
PkrI GCNGC 3 cut(s) 104, 190, 258
PmaCI CACGTG 1 cut(s) 28
PmlI CACGTG 1 cut(s) 28
Ppu21I YACGTR 1 cut(s) 28
Psp1406I AACGTT 1 cut(s) 638
PspCI CACGTG 1 cut(s) 28
PspLI CGTACG 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 602
PspXI VCTCGAGB 1 cut(s) 465
PvuII CAGCTG 1 cut(s) 155
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 3 cut(s) 285, 305, 664
SatI GCNGC 3 cut(s) 103, 189, 257
Sau3AI GATC 4 cut(s) 49, 67, 157, 576
Sau96I GGNCC 1 cut(s) 602
ScrFI CCNGG 3 cut(s) 294, 295, 312
SduI GDGCHC 1 cut(s) 491
SfaNI GCATC 1 cut(s) 618
Sfr274I CTCGAG 1 cut(s) 465
SfuI TTCGAA 1 cut(s) 435
SinI GGWCC 1 cut(s) 602
SlaI CTCGAG 1 cut(s) 465
SmaI CCCGGG 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 2 cut(s) 304, 465
SmoI CTYRAG 2 cut(s) 304, 465
Sse9I AATT 2 cut(s) 181, 551
StyD4I CCNGG 3 cut(s) 292, 293, 310
StyI CCWWGG 2 cut(s) 120, 389
TaaI ACNGT 2 cut(s) 38, 44
TaiI ACGT 4 cut(s) 30, 343, 599, 641
TaqI TCGA 4 cut(s) 350, 435, 451, 466
TasI AATT 2 cut(s) 181, 551
TfiI GAWTC 2 cut(s) 317, 385
Tru1I TTAA 3 cut(s) 285, 305, 664
Tru9I TTAA 3 cut(s) 285, 305, 664
TseI GCWGC 3 cut(s) 102, 188, 256
TspDTI ATGAA 3 cut(s) 24, 490, 520
TspGWI ACGGA 1 cut(s) 345
TspMI CCCGGG 1 cut(s) 293
Vha464I CTTAAG 1 cut(s) 304
VneI GTGCAC 1 cut(s) 487
VpaK11BI GGWCC 1 cut(s) 602
XhoI CTCGAG 1 cut(s) 465
XmaI CCCGGG 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.