Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005608

Physical Location & Seq

Genomic Coordinates Forward (+)

13386191 .. 13387445

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGATCAAAATGCTTCAAACGACCTTGAGCTAGTGAAATCACCATCGGAAAAGCATCTTGAACGTTTGAGACCATCAGCTCGATATTATTCAATATTTAAAGGGCAAGCAAAAGATGCTGCAGATCCTGAAAAAGGCAAATATTCCCTAATTAGAGATGCAGAAGACTTTCCGTCAGGAATATACGAGAAACAGCTTCCATGCTTTGGCTGTGGGATAGGATGGTTTTCTTTTCTTTTAGGCTTCGTATTCCCATTAATGTGGTACTATGCCACAGTTCTCTATTTTGGAAATTACTATCGGAAGGATCGATCCGTTCCTAGGGAGCGAGCAGGACTAGCCGCCTCTGCAATTGCTGCACTAGTTTGTTCTGTGGTGCTCTTGATCATAGCGTTGTTTCGGATGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.47

Weight (kDa)

8.76

Isoelectric Point (pI)

30.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060 AT5G57060
fragaria_vesca	FvH4_1g08050 FvH4_1g08050 FvH4_1g08050
malus_domestica	MD02G1085200.v1.1 MD15G1212300.v1.1
prunus_persica	Prupe.7G204400_v2.0.a1 Prupe.7G204400_v2.0.a1
pyrus_communis	pycom02g06800 pycom15g18860
rosa_chinensis	RchiOBHm_Chr2g0094101
rosa_laevigata	RLG00000016455
rosa_multiflora	Rmu_ssc0000149.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147480
rosa_rugosa	Rorug02G0040900
rosa_samantha	Rh2AG088500 Rh2BG088600 Rh2CG091000 Rh2DG087600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	206
AciI	CCGC	1 cut(s)	342
AclI	AACGTT	1 cut(s)	64
AclWI	GGATC	4 cut(s)	12, 119, 306, 315
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	3 cut(s)	134, 206, 321
AgsI	TTSAA	3 cut(s)	18, 62, 93
AhdI	GACNNNNNGTC	1 cut(s)	172
AhlI	ACTAGT	1 cut(s)	361
AluBI	AGCT	3 cut(s)	31, 80, 196
AluI	AGCT	3 cut(s)	31, 80, 196
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	4 cut(s)	12, 119, 306, 315
AlwNI	CAGNNNCTG	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	119, 356
AseI	ATTAAT	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	168
AspA2I	CCTAGG	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	33
AvrII	CCTAGG	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	106, 343
BccI	CCATC	3 cut(s)	52, 82, 216
BclI	TGATCA	1 cut(s)	384
BcoDI	GTCTC	1 cut(s)	64
BcuI	ACTAGT	1 cut(s)	361
BfaI	CTAG	5 cut(s)	32, 321, 338, 362, 409
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	3 cut(s)	120, 342, 357
BlnI	CCTAGG	1 cut(s)	320
BlsI	GCNGC	3 cut(s)	121, 343, 358
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmsI	GCATC	3 cut(s)	64, 106, 148
BpiI	GAAGAC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	47
Bsa29I	ATCGAT	1 cut(s)	310
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 206, 321
BseCI	ATCGAT	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	2 cut(s)	227, 408
BseLI	CCNNNNNNNGG	3 cut(s)	134, 206, 321
BseXI	GCAGC	2 cut(s)	106, 343
BsgI	GTGCAG	1 cut(s)	342
BshVI	ATCGAT	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	381
BslI	CCNNNNNNNGG	3 cut(s)	134, 206, 321
BsmAI	GTCTC	1 cut(s)	64
Bso31I	GGTCTC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	5 cut(s)	4, 124, 307, 311, 384
BspACI	CCGC	1 cut(s)	342
BspDI	ATCGAT	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	4 cut(s)	12, 119, 306, 315
BspTNI	GGTCTC	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	5 cut(s)	4, 124, 307, 311, 384
BssT1I	CCWWGG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	277
BstAPI	GCANNNNNTGC	2 cut(s)	116, 356
BstC8I	GCNNGC	2 cut(s)	108, 330
BstENI	CCTNNNNNAGG	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	227, 408
BstKTI	GATC	5 cut(s)	7, 127, 310, 314, 387
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	5 cut(s)	4, 124, 307, 311, 384
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 338, 347, 356
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	106, 343
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	124
BstXI	CCANNNNNNTGG	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	124
Bsu15I	ATCGAT	1 cut(s)	310
BsuTUI	ATCGAT	1 cut(s)	310
BtsCI	GGATG	2 cut(s)	227, 408
Cac8I	GCNNGC	2 cut(s)	108, 330
CaiI	CAGNNNCTG	1 cut(s)	128
ClaI	ATCGAT	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	1 cut(s)	201
CviJI	RGCY	6 cut(s)	31, 80, 196, 210, 243, 341
CviKI_1	RGCY	6 cut(s)	31, 80, 196, 210, 243, 341
CviQI	GTAC	1 cut(s)	265
DpnI	GATC	5 cut(s)	6, 126, 309, 313, 386
DpnII	GATC	5 cut(s)	4, 124, 307, 311, 384
DraI	TTTAAA	1 cut(s)	100
DriI	GACNNNNNGTC	1 cut(s)	172
Eam1105I	GACNNNNNGTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	64
EcoNI	CCTNNNNNAGG	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	1 cut(s)	204
FaiI	YATR	4 cut(s)	184, 202, 270, 389
FatI	CATG	1 cut(s)	200
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	3 cut(s)	120, 342, 357
FokI	GGATG	1 cut(s)	234
Fsp4HI	GCNGC	3 cut(s)	120, 342, 357
FspBI	CTAG	5 cut(s)	32, 321, 338, 362, 409
GluI	GCNGC	3 cut(s)	120, 342, 357
Hin1II	CATG	1 cut(s)	204
HphI	GGTGA	1 cut(s)	33
Hpy188I	TCNGA	3 cut(s)	49, 303, 402
Hpy188III	TCNNGA	4 cut(s)	59, 128, 177, 382
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	4 cut(s)	122, 161, 350, 359
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 338, 347, 356
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	1 cut(s)	204
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	5 cut(s)	4, 124, 307, 311, 384
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	3 cut(s)	141, 162, 318
Lsp1109I	GCAGC	2 cut(s)	106, 343
LweI	GCATC	3 cut(s)	64, 106, 148
MaeI	CTAG	5 cut(s)	32, 321, 338, 362, 409
MaeII	ACGT	1 cut(s)	64
MalI	GATC	5 cut(s)	6, 126, 309, 313, 386
MboI	GATC	5 cut(s)	4, 124, 307, 311, 384
MboII	GAAGA	1 cut(s)	176
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	3 cut(s)	150, 292, 351
MnlI	CCTC	1 cut(s)	355
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	2 cut(s)	99, 257
MslI	CAYNNNNRTG	1 cut(s)	259
MunI	CAATTG	1 cut(s)	351
MwoI	GCNNNNNNNGC	4 cut(s)	116, 338, 347, 356
NdeII	GATC	5 cut(s)	4, 124, 307, 311, 384
NlaIII	CATG	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	168
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	3 cut(s)	121, 343, 358
PshBI	ATTAAT	1 cut(s)	257
Psp1406I	AACGTT	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	99, 257
SatI	GCNGC	3 cut(s)	120, 342, 357
Sau3AI	GATC	5 cut(s)	4, 124, 307, 311, 384
SduI	GDGCHC	1 cut(s)	381
SetI	ASST	5 cut(s)	27, 33, 67, 82, 198
SfaNI	GCATC	3 cut(s)	64, 106, 148
SfcI	CTRYAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
SpeI	ACTAGT	1 cut(s)	361
Sse9I	AATT	3 cut(s)	150, 292, 351
SsiI	CCGC	1 cut(s)	342
SspI	AATATT	2 cut(s)	96, 143
SspMI	CTAG	5 cut(s)	32, 321, 338, 362, 409
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	2 cut(s)	82, 310
TasI	AATT	3 cut(s)	150, 292, 351
TauI	GCSGC	1 cut(s)	344
Tru1I	TTAA	2 cut(s)	99, 257
Tru9I	TTAA	2 cut(s)	99, 257
TseI	GCWGC	2 cut(s)	119, 356
TspGWI	ACGGA	2 cut(s)	162, 304
Van91I	CCANNNNNTGG	1 cut(s)	206
VspI	ATTAAT	1 cut(s)	257
XagI	CCTNNNNNAGG	1 cut(s)	132
XmaJI	CCTAGG	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	5 cut(s)	32, 321, 338, 362, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.