Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014218

Physical Location & Seq

Genomic Coordinates Reverse (-)

14608923 .. 14611413

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGTGGAGGAGTTTATGCTTGCTGCTAATGTTTCAGTTGCTGAGAAAATTCTTAAACATTTTCCTCTATGTTCACTATTGAGGCGGCATCCTTCTCCTACCAGAGAGATGCTTGAACCGTTGTTGCGTACAGCTGCAGCTATTGGTCTGAACTTGGATGTCTCATCATCAAAAGCACTAGCTGATTCACTTGACTCTGCTGTGGGTGATGATCCGTACTTCAACAAGCTGATTCGGATTTTGGCTACAAGATGCATGACCCAGGCTGTTTACTTCTGTAGTGGGGATCTTAGCCCTCCAGAATATCTTCACTATGGGCTTGCAGCATCTCTATACACTCATTTCACCTCTCCTATTAGGAGATATGCAGATGTCATAACACACAGGTTGCTTGCTGCATCTTTGGGGATATACAAGCTTCCAACTATATTCCAAGATGGACCCCGACTCACAAGCATTGCTGACAATTTAAATTATCGGCATAGGAATGCCCAGATGGCAAGTCGGGCCTCAGTGGAGCTCCATACTGTCATTTTTTTCAAAAAGCGGCCGACGGACACAGAGGCAAGAATAGTCAGAATACGATCCAATGGATTTTTCGTCTTTGTGCCTAAGTACGGCATAGAAGGGCCGGTGTACTTGACCCCAAGGGGTGAGAAGGGAAGCGGAGAATGGTATGTAGATGAGCAACAACAGAAGATTAGAAAAATGGACGGTAGTATTTCATACAGCGTTCTGCAGACGGTGTTTATTCACATGGAGATTGTGGAACCCCAGCCCAACAGGCCAAAACTCCAACTGTCGCTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000178 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004527 GO:0004532 GO:0004540 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019439 GO:0019899 GO:0022613 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0051020 GO:0065007 GO:0065009 GO:0070013 GO:0071034 GO:0071043 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0098772 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PIN_4 RNB Rrp44_CSD1 Rrp44_S1

Protein Analysis

271

Amino Acids

30.49

Weight (kDa)

9.18

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNB	PF00773	1 - 135	1.7e-32	RNB domain
Rrp44_S1	PF17215	187 - 238	1.2e-07	S1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17510 AT2G17510
fragaria_vesca	FvH4_1g10170 FvH4_1g10170
malus_domestica	MD02G1113900.v1.1 MD15G1229000.v1.1
prunus_persica	Prupe.7G185100_v2.0.a1
pyrus_communis	pycom02g08870 pycom15g20420
rosa_chinensis	RchiOBHm_Chr2g0096961
rosa_laevigata	RLG00000016687
rosa_multiflora	Rmu_sc0001651.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145120
rosa_rugosa	Rorug02G0062300
rosa_samantha	Rh2AG110300 Rh2BG112100
rosa_wichuraiana	Rw2G008530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	85, 547, 666
AclWI	GGATC	3 cut(s)	206, 294, 579
AcoI	YGGCCR	1 cut(s)	548
AcsI	RAATTY	1 cut(s)	48
AfaI	GTAC	4 cut(s)	130, 218, 617, 638
AfiI	CCNNNNNNNGG	1 cut(s)	617
AgsI	TTSAA	3 cut(s)	116, 223, 541
AjnI	CCWGG	1 cut(s)	261
AjuI	GAANNNNNNNTTGG	2 cut(s)	581, 613
AluBI	AGCT	6 cut(s)	134, 140, 182, 229, 418, 520
AluI	AGCT	6 cut(s)	134, 140, 182, 229, 418, 520
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	3 cut(s)	206, 294, 579
AlwNI	CAGNNNCTG	1 cut(s)	41
AoxI	GGCC	4 cut(s)	507, 548, 629, 785
ApeKI	GCWGC	5 cut(s)	23, 134, 137, 323, 395
ApoI	RAATTY	1 cut(s)	48
Asp700I	GAANNNNTTC	1 cut(s)	306
AspS9I	GGNCC	3 cut(s)	440, 507, 629
AsuHPI	GGTGA	3 cut(s)	218, 337, 665
AvaII	GGWCC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	522
BbvI	GCAGC	5 cut(s)	10, 121, 149, 335, 382
BccI	CCATC	2 cut(s)	431, 490
BceAI	ACGGC	1 cut(s)	634
BciT130I	CCWGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	3 cut(s)	135, 277, 737
BglI	GCCNNNNNGGC	2 cut(s)	497, 784
BisI	GCNGC	7 cut(s)	24, 86, 135, 138, 324, 396, 548
BlsI	GCNGC	7 cut(s)	25, 87, 136, 139, 325, 397, 549
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	3 cut(s)	440, 507, 629
BmiI	GGNNCC	2 cut(s)	442, 771
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	5 cut(s)	97, 99, 242, 335, 407
BpmI	CTGGAG	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	261, 647
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse118I	RCCGGY	1 cut(s)	631
Bse3DI	GCAATG	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	261, 647
BseGI	GGATG	2 cut(s)	88, 163
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	2 cut(s)	33, 525
BseRI	GAGGAG	1 cut(s)	23
BseX3I	CGGCCG	1 cut(s)	548
BseXI	GCAGC	5 cut(s)	10, 121, 149, 335, 382
BseYI	CCCAGC	1 cut(s)	774
Bsh1285I	CGRYCG	1 cut(s)	551
BshFI	GGCC	4 cut(s)	509, 550, 631, 787
BsiEI	CGRYCG	1 cut(s)	551
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	1 cut(s)	632
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	1 cut(s)	166
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	4 cut(s)	509, 550, 631, 787
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	3 cut(s)	211, 286, 584
BspACI	CCGC	3 cut(s)	85, 547, 666
BspANI	GGCC	4 cut(s)	509, 550, 631, 787
BspCNI	CTCAG	2 cut(s)	34, 524
BspLI	GGNNCC	2 cut(s)	442, 771
BspMAI	CTGCAG	2 cut(s)	139, 741
BspPI	GGATC	3 cut(s)	206, 294, 579
BsrDI	GCAATG	1 cut(s)	456
BsrFI	RCCGGY	1 cut(s)	631
BssAI	RCCGGY	1 cut(s)	631
BssECI	CCNNGG	2 cut(s)	261, 647
BssMI	GATC	3 cut(s)	211, 286, 584
BssT1I	CCWWGG	1 cut(s)	647
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	5 cut(s)	120, 529, 716, 745, 801
BstC8I	GCNNGC	3 cut(s)	21, 321, 393
BstDEI	CTNAG	4 cut(s)	42, 290, 511, 612
BstF5I	GGATG	2 cut(s)	88, 163
BstKTI	GATC	3 cut(s)	214, 289, 587
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	3 cut(s)	211, 286, 584
BstMCI	CGRYCG	1 cut(s)	551
BstMWI	GCNNNNNNNGC	3 cut(s)	497, 506, 784
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	3 cut(s)	135, 277, 737
BstV1I	GCAGC	5 cut(s)	10, 121, 149, 335, 382
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BstZI	CGGCCG	1 cut(s)	548
BsuRI	GGCC	4 cut(s)	509, 550, 631, 787
BtsCI	GGATG	2 cut(s)	88, 163
BtsIMutI	CAGTG	1 cut(s)	519
Cac8I	GCNNGC	3 cut(s)	21, 321, 393
CaiI	CAGNNNCTG	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	631
Cfr13I	GGNCC	3 cut(s)	440, 507, 629
Csp6I	GTAC	4 cut(s)	129, 217, 616, 637
CviAII	CATG	2 cut(s)	256, 757
CviQI	GTAC	4 cut(s)	129, 217, 616, 637
DdeI	CTNAG	4 cut(s)	42, 290, 511, 612
DpnI	GATC	3 cut(s)	213, 288, 586
DpnII	GATC	3 cut(s)	211, 286, 584
DraI	TTTAAA	1 cut(s)	471
EaeI	YGGCCR	1 cut(s)	548
EagI	CGGCCG	1 cut(s)	548
Ecl136II	GAGCTC	1 cut(s)	520
EclXI	CGGCCG	1 cut(s)	548
Eco130I	CCWWGG	1 cut(s)	647
Eco24I	GRGCYC	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	440
Eco52I	CGGCCG	1 cut(s)	548
Eco53kI	GAGCTC	1 cut(s)	520
EcoICRI	GAGCTC	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	647
EcoT22I	ATGCAT	1 cut(s)	257
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	647
FaeI	CATG	2 cut(s)	259, 760
FatI	CATG	2 cut(s)	255, 756
Fnu4HI	GCNGC	7 cut(s)	24, 86, 135, 138, 324, 396, 548
FokI	GGATG	2 cut(s)	75, 170
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	7 cut(s)	24, 86, 135, 138, 324, 396, 548
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	7 cut(s)	24, 86, 135, 138, 324, 396, 548
GsaI	CCCAGC	1 cut(s)	778
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	4 cut(s)	509, 550, 631, 787
HapII	CCGG	1 cut(s)	632
Hin1II	CATG	2 cut(s)	259, 760
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	4 cut(s)	185, 194, 232, 447
HpaII	CCGG	1 cut(s)	632
HphI	GGTGA	3 cut(s)	218, 337, 665
Hpy166II	GTNNAC	3 cut(s)	74, 271, 637
Hpy188I	TCNGA	3 cut(s)	150, 237, 578
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	3 cut(s)	74, 271, 637
Hpy99I	CGWCG	1 cut(s)	556
HpyAV	CCTTC	3 cut(s)	102, 620, 652
HpyCH4III	ACNGT	5 cut(s)	120, 529, 716, 745, 801
HpyCH4V	TGCA	6 cut(s)	137, 255, 323, 368, 398, 739
HpyF10VI	GCNNNNNNNGC	3 cut(s)	497, 506, 784
HpyF3I	CTNAG	4 cut(s)	42, 290, 511, 612
Hsp92II	CATG	2 cut(s)	259, 760
Kzo9I	GATC	3 cut(s)	211, 286, 584
LmnI	GCTCC	2 cut(s)	517, 525
Lsp1109I	GCAGC	5 cut(s)	10, 121, 149, 335, 382
LweI	GCATC	5 cut(s)	97, 99, 242, 335, 407
MaeI	CTAG	1 cut(s)	179
MalI	GATC	3 cut(s)	213, 288, 586
MboI	GATC	3 cut(s)	211, 286, 584
MboII	GAAGA	2 cut(s)	299, 709
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	3 cut(s)	48, 466, 472
MlyI	GAGTC	2 cut(s)	188, 441
MmeI	TCCRAC	1 cut(s)	446
MnlI	CCTC	6 cut(s)	75, 75, 306, 358, 520, 556
Mph1103I	ATGCAT	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	2 cut(s)	54, 470
MslI	CAYNNNNRTG	1 cut(s)	486
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	632
MspR9I	CCNGG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	497, 506, 784
NdeII	GATC	3 cut(s)	211, 286, 584
NlaIII	CATG	2 cut(s)	259, 760
NlaIV	GGNNCC	2 cut(s)	442, 771
NsiI	ATGCAT	1 cut(s)	257
PctI	GAATGC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	185, 232
PkrI	GCNGC	7 cut(s)	25, 87, 136, 139, 325, 397, 549
PleI	GAGTC	2 cut(s)	188, 441
PpsI	GAGTC	2 cut(s)	188, 441
Psp124BI	GAGCTC	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	774
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	442, 771
PspPI	GGNCC	3 cut(s)	440, 507, 629
PstI	CTGCAG	2 cut(s)	139, 741
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	286
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	4 cut(s)	130, 218, 617, 638
RsaNI	GTAC	4 cut(s)	129, 217, 616, 637
RseI	CAYNNNNRTG	1 cut(s)	486
SacI	GAGCTC	1 cut(s)	522
SaqAI	TTAA	2 cut(s)	54, 470
SatI	GCNGC	7 cut(s)	24, 86, 135, 138, 324, 396, 548
Sau3AI	GATC	3 cut(s)	211, 286, 584
Sau96I	GGNCC	3 cut(s)	440, 507, 629
SchI	GAGTC	2 cut(s)	188, 441
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	522
SetI	ASST	8 cut(s)	136, 142, 184, 231, 350, 389, 420, 522
SfaNI	GCATC	5 cut(s)	97, 99, 242, 335, 407
SfcI	CTRYAG	3 cut(s)	135, 277, 737
SinI	GGWCC	1 cut(s)	440
SmiI	ATTTAAAT	1 cut(s)	471
SmiMI	CAYNNNNRTG	1 cut(s)	486
Sse9I	AATT	3 cut(s)	48, 466, 472
SsiI	CCGC	3 cut(s)	85, 547, 666
SspMI	CTAG	1 cut(s)	179
SstI	GAGCTC	1 cut(s)	522
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	647
SwaI	ATTTAAAT	1 cut(s)	471
TaaI	ACNGT	5 cut(s)	120, 529, 716, 745, 801
TasI	AATT	3 cut(s)	48, 466, 472
TatI	WGTACW	1 cut(s)	636
TauI	GCSGC	2 cut(s)	88, 550
TfiI	GAWTC	2 cut(s)	185, 232
Tru1I	TTAA	2 cut(s)	54, 470
Tru9I	TTAA	2 cut(s)	54, 470
TscAI	CASTG	1 cut(s)	519
TseI	GCWGC	5 cut(s)	23, 134, 137, 323, 395
TspDTI	ATGAA	1 cut(s)	714
TspGWI	ACGGA	2 cut(s)	204, 569
TspRI	CASTG	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.