pycom15g20960

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011245
Physical Location & Seq
Reverse (-)
15036234 .. 15040837
4604 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1041 bp
ATGACGATCGTGAACATCTGCCGGGACTCGTCGTGTCGACCATTTGAGCGATGCTCCCGTTTCCTTCCCTGCCTCTCCGATCCCGCGCGGAGGTCTGCTTTGGGATTGAAAGTTGCATTGGTGATGCTACATCTGATATACGCCGGCGTGATTTTTCTTTTTGATGGAGGTTTGATAGAGAAAACTAAGAAAGAACCATGGAATACTGCTGTATATTTGACTCTCTTTGTTGTGACACTGATTCAATACTTTGTTACCTCTGGTTCTTCTCCGGGCTTTGTCCTCGATGCAATGAGGACTGTCAATGAATCCAATACAATATTCAGAAAAGCATCAGTAATCTCAAAACAGCCTGCTCCAAGCAAAACTGGCAGCGTGGTTGTGACAGTGGAAGGGAGTCAGTTGGGAAGAAGTCTTCTTGGAAATAATGCAACATCTTGGACCAAACTTGTGATGGACTTGTATCCACCTGGAACATCTGTTAGAAGTTTGACATGCGCGTACTGTAATGTTGAGCAGCCTCCGAGATCAAAGCACTGCCATGATTGTGACAAATGTGTTCTTCAGTTCGATCATCATTGTGTTTGGCTTGGAACATGCATTGGTGTGGGTAACCATTGTAAATTTTGGTGGTACATTTGCGAAGAGACAGCACTGTGCCTTTGGACTGTCATCCTGTACATCACATACCTGAAGGCTAATATATCAGTCGCTTGGTGGAAGGATGCAATTGTGATATTGCTGTTGGTTACTTTGTCAATTTCCATGACCTTTCTGCTGCTCCTCCTGATATTTCATAGTTACCTAGTTCTGACCAATCAGACTACCTATGAGCTTGTAAGACGAAGGCGCATCCCATATTTAAGAGGAGTACCCGAGAGGGTATATCCTTTCAGTAAAGGAGCATGCAGAAATTTATACGAGTTTTGCTGTGTTCGAAGCAGTAAATACAGAATGGAATCATTACCAACAACGCAGCAACTTGAAGAAAAGTCTAGACCTTACACCTGTTGTGACGTTGTAACCTGTCGTTGTTGCTGA

Protein Analysis

347

Amino Acids

39.31

Weight (kDa)

8.96

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 164 - 281 1.9e-30 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011245)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51390 AT3G51390
fragaria_vesca FvH4_1g10780 FvH4_6g14950
malus_domestica MD02G1121800.v1.1 MD15G1235400.v1.1
prunus_persica Prupe.7G177700_v2.0.a1 Prupe.7G177700_v2.0.a1
pyrus_communis pycom02g09470 pycom15g20960
rosa_chinensis RchiOBHm_Chr2g0097961
rosa_laevigata RLG00000016746
rosa_multiflora Rmu_sc0009572.1_g000004
rosa_roxburghii Rroxscaffold_2G00144420
rosa_rugosa Rorug02G0069300
rosa_samantha Rh2AG116300 Rh2BG119200 Rh2CG120800 Rh2DG120500
rosa_wichuraiana Rw2G009100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 37
AccII CGCG 3 cut(s) 86, 88, 500
AciI CCGC 2 cut(s) 84, 88
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 2 cut(s) 623, 913
AcuI CTGAAG 2 cut(s) 548, 713
AfaI GTAC 4 cut(s) 503, 635, 680, 873
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 3 cut(s) 109, 245, 986
AjnI CCWGG 1 cut(s) 469
AjuI GAANNNNNNNTTGG 4 cut(s) 101, 133, 305, 337
AluBI AGCT 1 cut(s) 835
AluI AGCT 1 cut(s) 835
Alw26I GTCTC 1 cut(s) 641
AlwI GGATC 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 875
ApeKI GCWGC 4 cut(s) 372, 517, 778, 976
ApoI RAATTY 2 cut(s) 623, 913
AspLEI GCGC 3 cut(s) 88, 500, 852
AspS9I GGNCC 1 cut(s) 441
AsuC2I CCSGG 2 cut(s) 23, 273
AsuHPI GGTGA 1 cut(s) 133
AsuII TTCGAA 1 cut(s) 937
AvaI CYCGRG 1 cut(s) 875
AvaII GGWCC 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 407
BbvI GCAGC 4 cut(s) 384, 529, 765, 988
BccI CCATC 2 cut(s) 158, 448
BciT130I CCWGG 1 cut(s) 471
BciVI GTATCC 1 cut(s) 474
BcnI CCSGG 2 cut(s) 23, 273
BcoDI GTCTC 1 cut(s) 641
BfaI CTAG 2 cut(s) 806, 996
BfuI GTATCC 1 cut(s) 474
BisI GCNGC 4 cut(s) 373, 518, 779, 977
BlsI GCNGC 4 cut(s) 374, 519, 780, 978
Bme1390I CCNGG 3 cut(s) 23, 273, 471
Bme18I GGWCC 1 cut(s) 441
BmeT110I CYCGRG 1 cut(s) 875
BmgT120I GGNCC 1 cut(s) 441
BmrFI CCNGG 3 cut(s) 23, 273, 471
BmsI GCATC 6 cut(s) 41, 114, 277, 341, 715, 861
BpiI GAAGAC 1 cut(s) 407
BplI GAGNNNNNCTC 2 cut(s) 38, 70
Bpu14I TTCGAA 1 cut(s) 937
BpuMI CCSGG 2 cut(s) 23, 273
BsaJI CCNNGG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 297
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 3 cut(s) 672, 730, 852
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 2 cut(s) 773, 882
BseXI GCAGC 4 cut(s) 384, 529, 765, 988
Bsh1236I CGCG 3 cut(s) 86, 88, 500
Bsh1285I CGRYCG 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 875
BsiSI CCGG 3 cut(s) 22, 144, 272
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 641
BsmFI GGGAC 1 cut(s) 38
BsoBI CYCGRG 1 cut(s) 875
Bsp119I TTCGAA 1 cut(s) 937
Bsp1407I TGTACA 1 cut(s) 678
Bsp143I GATC 4 cut(s) 6, 79, 527, 571
Bsp19I CCATGG 1 cut(s) 197
BspACI CCGC 2 cut(s) 84, 88
BspFNI CGCG 3 cut(s) 86, 88, 500
BspPI GGATC 1 cut(s) 74
BspT104I TTCGAA 1 cut(s) 937
BsrDI GCAATG 1 cut(s) 297
BsrFI RCCGGY 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 678
BsrI ACTGG 1 cut(s) 373
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 4 cut(s) 6, 79, 527, 571
BssT1I CCWWGG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 5 cut(s) 301, 388, 506, 657, 670
Bst6I CTCTTC 1 cut(s) 639
BstAUI TGTACA 1 cut(s) 678
BstBI TTCGAA 1 cut(s) 937
BstC8I GCNNGC 3 cut(s) 145, 354, 907
BstDEI CTNAG 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 197
BstEII GGTNACC 1 cut(s) 611
BstF5I GGATG 3 cut(s) 672, 730, 852
BstFNI CGCG 3 cut(s) 86, 88, 500
BstHHI GCGC 3 cut(s) 88, 500, 852
BstKTI GATC 4 cut(s) 9, 82, 530, 574
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 4 cut(s) 6, 79, 527, 571
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstNI CCWGG 1 cut(s) 471
BstNSI RCATGY 3 cut(s) 498, 600, 909
BstPI GGTNACC 1 cut(s) 611
BstSCI CCNGG 3 cut(s) 21, 271, 469
BstUI CGCG 3 cut(s) 86, 88, 500
BstV1I GCAGC 4 cut(s) 384, 529, 765, 988
BstV2I GAAGAC 1 cut(s) 407
BsuI GTATCC 1 cut(s) 474
BtgI CCRYGG 1 cut(s) 197
BtgZI GCGATG 1 cut(s) 64
BtsCI GGATG 3 cut(s) 672, 730, 852
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 4 cut(s) 236, 393, 535, 653
Cac8I GCNNGC 3 cut(s) 145, 354, 907
CfoI GCGC 3 cut(s) 88, 500, 852
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 441
Csp6I GTAC 4 cut(s) 502, 634, 679, 872
CviAII CATG 6 cut(s) 198, 495, 542, 597, 766, 906
CviJI RGCY 6 cut(s) 276, 352, 520, 589, 698, 835
CviKI_1 RGCY 6 cut(s) 276, 352, 520, 589, 698, 835
CviQI GTAC 4 cut(s) 502, 634, 679, 872
DdeI CTNAG 1 cut(s) 186
DpnI GATC 4 cut(s) 8, 81, 529, 573
DpnII GATC 4 cut(s) 6, 79, 527, 571
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Eco130I CCWWGG 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 441
Eco57I CTGAAG 2 cut(s) 548, 713
Eco88I CYCGRG 1 cut(s) 875
Eco91I GGTNACC 1 cut(s) 611
EcoO65I GGTNACC 1 cut(s) 611
EcoRII CCWGG 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 197
EcoT22I ATGCAT 1 cut(s) 602
ErhI CCWWGG 1 cut(s) 197
FaeI CATG 6 cut(s) 201, 498, 545, 600, 769, 909
FaqI GGGAC 1 cut(s) 38
FatI CATG 6 cut(s) 197, 494, 541, 596, 765, 905
FauI CCCGC 1 cut(s) 91
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 4 cut(s) 373, 518, 779, 977
FokI GGATG 3 cut(s) 659, 737, 839
Fsp4HI GCNGC 4 cut(s) 373, 518, 779, 977
FspBI CTAG 2 cut(s) 806, 996
GlaI GCGC 3 cut(s) 87, 499, 851
GluI GCNGC 4 cut(s) 373, 518, 779, 977
HapII CCGG 3 cut(s) 22, 144, 272
HhaI GCGC 3 cut(s) 88, 500, 852
Hin1II CATG 6 cut(s) 201, 498, 545, 600, 769, 909
Hin6I GCGC 3 cut(s) 86, 498, 850
HinP1I GCGC 3 cut(s) 86, 498, 850
HincII GTYRAC 1 cut(s) 38
HindII GTYRAC 1 cut(s) 38
HinfI GANTC 6 cut(s) 26, 220, 241, 308, 397, 959
HpaII CCGG 3 cut(s) 22, 144, 272
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 2 cut(s) 13, 38
Hpy188I TCNGA 6 cut(s) 79, 135, 326, 525, 813, 822
Hpy188III TCNNGA 3 cut(s) 10, 787, 996
Hpy8I GTNNAC 2 cut(s) 13, 38
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 5 cut(s) 74, 386, 688, 715, 840
HpyCH4III ACNGT 5 cut(s) 301, 388, 506, 657, 670
HpyCH4IV ACGT 1 cut(s) 1017
HpyCH4V TGCA 6 cut(s) 116, 290, 431, 600, 728, 909
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 1017
Hsp92II CATG 6 cut(s) 201, 498, 545, 600, 769, 909
HspAI GCGC 3 cut(s) 86, 498, 850
KroI GCCGGC 1 cut(s) 143
KroNI GCCGGC 1 cut(s) 145
Kzo9I GATC 4 cut(s) 6, 79, 527, 571
LmnI GCTCC 4 cut(s) 59, 361, 786, 902
Lsp1109I GCAGC 4 cut(s) 384, 529, 765, 988
LweI GCATC 6 cut(s) 41, 114, 277, 341, 715, 861
MaeI CTAG 2 cut(s) 806, 996
MaeII ACGT 1 cut(s) 1017
MaeIII GTNAC 9 cut(s) 232, 253, 382, 548, 611, 748, 800, 1013, 1021
MalI GATC 4 cut(s) 8, 81, 529, 573
MboI GATC 4 cut(s) 6, 79, 527, 571
MboII GAAGA 6 cut(s) 258, 407, 420, 554, 656, 998
MfeI CAATTG 1 cut(s) 729
MluCI AATT 4 cut(s) 623, 729, 759, 913
MlyI GAGTC 3 cut(s) 20, 214, 406
Mph1103I ATGCAT 1 cut(s) 602
MreI CGCCGGCG 1 cut(s) 143
MroNI GCCGGC 1 cut(s) 143
MseI TTAA 1 cut(s) 863
MslI CAYNNNNRTG 4 cut(s) 540, 546, 579, 605
MspI CCGG 3 cut(s) 22, 144, 272
MspR9I CCNGG 3 cut(s) 23, 273, 471
MunI CAATTG 1 cut(s) 729
MvaI CCWGG 1 cut(s) 471
MvnI CGCG 3 cut(s) 86, 88, 500
MwoI GCNNNNNNNGC 1 cut(s) 369
NaeI GCCGGC 1 cut(s) 145
NciI CCSGG 2 cut(s) 23, 273
NcoI CCATGG 1 cut(s) 197
NdeII GATC 4 cut(s) 6, 79, 527, 571
NgoMIV GCCGGC 1 cut(s) 143
NlaIII CATG 6 cut(s) 201, 498, 545, 600, 769, 909
NmuCI GTSAC 4 cut(s) 232, 382, 548, 1013
NsiI ATGCAT 1 cut(s) 602
NspI RCATGY 3 cut(s) 498, 600, 909
NspV TTCGAA 1 cut(s) 937
PaeI GCATGC 1 cut(s) 909
PdiI GCCGGC 1 cut(s) 145
PfeI GAWTC 3 cut(s) 241, 308, 959
PkrI GCNGC 4 cut(s) 374, 519, 780, 978
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 3 cut(s) 20, 214, 405
PpsI GAGTC 3 cut(s) 20, 214, 405
Psp6I CCWGG 1 cut(s) 469
PspEI GGTNACC 1 cut(s) 611
PspGI CCWGG 1 cut(s) 469
PspPI GGNCC 1 cut(s) 441
PvuI CGATCG 1 cut(s) 9
RsaI GTAC 4 cut(s) 503, 635, 680, 873
RsaNI GTAC 4 cut(s) 502, 634, 679, 872
RseI CAYNNNNRTG 4 cut(s) 540, 546, 579, 605
SalI GTCGAC 1 cut(s) 36
SaqAI TTAA 1 cut(s) 863
SatI GCNGC 4 cut(s) 373, 518, 779, 977
Sau3AI GATC 4 cut(s) 6, 79, 527, 571
Sau96I GGNCC 1 cut(s) 441
SchI GAGTC 3 cut(s) 20, 214, 406
ScrFI CCNGG 3 cut(s) 23, 273, 471
SfaNI GCATC 6 cut(s) 41, 114, 277, 341, 715, 861
SfuI TTCGAA 1 cut(s) 937
SgrAI CRCCGGYG 1 cut(s) 143
SinI GGWCC 1 cut(s) 441
SmiMI CAYNNNNRTG 4 cut(s) 540, 546, 579, 605
SphI GCATGC 1 cut(s) 909
Sse9I AATT 4 cut(s) 623, 729, 759, 913
SsiI CCGC 2 cut(s) 84, 88
SspI AATATT 1 cut(s) 321
SspMI CTAG 2 cut(s) 806, 996
StyD4I CCNGG 3 cut(s) 21, 271, 469
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 5 cut(s) 301, 388, 506, 657, 670
TaiI ACGT 1 cut(s) 1020
TaqI TCGA 4 cut(s) 37, 285, 570, 937
TasI AATT 4 cut(s) 623, 729, 759, 913
TatI WGTACW 1 cut(s) 678
TfiI GAWTC 3 cut(s) 241, 308, 959
Tru1I TTAA 1 cut(s) 863
Tru9I TTAA 1 cut(s) 863
TscAI CASTG 4 cut(s) 243, 393, 542, 660
TseFI GTSAC 4 cut(s) 232, 382, 548, 1013
TseI GCWGC 4 cut(s) 372, 517, 778, 976
Tsp45I GTSAC 4 cut(s) 232, 382, 548, 1013
TspDTI ATGAA 2 cut(s) 321, 785
TspRI CASTG 4 cut(s) 243, 393, 542, 660
VpaK11BI GGWCC 1 cut(s) 441
XapI RAATTY 2 cut(s) 623, 913
XbaI TCTAGA 1 cut(s) 995
XceI RCATGY 3 cut(s) 498, 600, 909
XcmI CCANNNNNNNNNTGG 1 cut(s) 451
XmiI GTMKAC 1 cut(s) 37
XspI CTAG 2 cut(s) 806, 996
Zsp2I ATGCAT 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.