Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015803

Physical Location & Seq

Genomic Coordinates Reverse (-)

16626770 .. 16629240

Gene Structure 2471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGAAGCATCCTTCTATTGCTCTTCTTTTAGCAATTATAATACACCAACAATGTTTTATTAGTCCCATCCATGTTTCAGCAGCAGGTGATGATTTCATCAGAGTAAGGGGAGTGCATTTTCTTCTCAACGGCAGCCCTTACTATGCAAACGGCTTCAATGGCTACTGGCTCATGTATGTGGCTTCTGACCCATCTCAGAGGCACAAAGTCTCGTCTGCTTTCCGCGAAGCAACTAGCCACGGACTCACCGTGGCTAGAACTTGGGCTTTCAGTGATGGAGGTTACAGGCCTCTTCAGTTCTCCCCTGGCTCCTACAACGAGCAAATGTTTAAGGGGTTGGATTTTGTGATAGCTGAGGCCAGAAGATATGGGATTAAGCTGATATTAAGCTTGGTAAACAACTATGAGAGCTTTGGAGGAAGAAAACAGTATGTGAATTGGGCAAGAAGGAAAGGGCAGAACTTCACATCTGATGATGATTTCTTCAGGAACCCTGTTGTGAAGGGTTACTACAAGAACCATGTAACCGCTGTTGTTAACAGATATAACACCTACACTGGAGTTCATTACAAAGATGACCCAACAATTATGGCCTGGGAACTTATTAATGAGCCTAGATGCTCATCAGATCCTTCAGGAAGGACTATTCAGGCTTGGATAATGGAAATGGCTTCACATGTGAAGTCAATAGATAGAAACCACTTATTGGAAGTTGGTCTAGAGGGATTTTATGGACAAGCAATACCTCAAAGGATGAGTCTCAATCCTGGTTATAATATTGGAACAGACTTTATTGCGAATAATCGGATTCCTGGGATCGATTTCACAACAGTTCATTCTTATCCTGATCAATGGTTGGGTAGCTCTAATGATCAACATCAGCTCGCTTTCTCGAACAACTGGCTCAATACCCACATCCAAGATGCACAGAACATTCTTCAAAAGCCGATATTCATCGCGGAGTTTGGGAAGTCATGGAAAGATCCCGGTTTCAGCACCTACCAAAGAGACTTGCTCTTCAACACCGTGTACTCCAAGATATACTTTTCGGCGAAAAGAGGAGGAGCAGCTGCCGGGGGACTATTCTGGCAACTTCTCACTGAAGGCATGGACTCTTTCCGTGATGGATACGACATAGTTCTGAGTCAGAGTCCCTCAACAGCAAATGTGATTGCTGAACAGTCTCACAAGCTCAATCAGATTCGGAAGATCTTTTGCGCGGATAAGAAATGCTCGGATGTGGAAGAGGGCAAGGGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005576 GO:0005623 GO:0005975 GO:0005976 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009636 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009845 GO:0009900 GO:0009987 GO:0010035 GO:0010038 GO:0010047 GO:0010154 GO:0010412 GO:0015923 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0042545 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044464 GO:0045229 GO:0046355 GO:0046686 GO:0048046 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0061687 GO:0071554 GO:0071555 GO:0071585 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090351 GO:0097501 GO:0098754 GO:1901575 GO:1990059 GO:1990170

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

421

Amino Acids

47.6

Weight (kDa)

8.66

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	31 - 364	2.6e-55	GH family 5 beta-mannosidase-like
Cellulase	PF00150	70 - 329	1.6e-10	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66460
malus_domestica	MD02G1143700.v1.1 MD15G1257000.v1.1
prunus_persica	Prupe.7G158000_v2.0.a1 Prupe.7G158000_v2.0.a1
pyrus_communis	pycom02g11360 pycom15g22490
rosa_chinensis	RchiOBHm_Chr2g0100951
rosa_laevigata	RLG00000017028
rosa_multiflora	Rmu_sc0001862.1_g000014
rosa_samantha	Rh2AG141600 Rh2BG146800 Rh2CG148100 Rh2DG147300
rosa_wichuraiana	Rw2G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	38, 774
AarI	CACCTGC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	74
AccB7I	CCANNNNNTGG	1 cut(s)	706
AccII	CGCG	3 cut(s)	225, 959, 1220
AciI	CCGC	4 cut(s)	223, 528, 959, 1220
AclWI	GGATC	3 cut(s)	623, 824, 977
AcuI	CTGAAG	4 cut(s)	278, 469, 618, 1122
AfaI	GTAC	1 cut(s)	1031
AfiI	CCNNNNNNNGG	1 cut(s)	706
AflIII	ACRYGT	1 cut(s)	676
AgsI	TTSAA	3 cut(s)	157, 941, 1021
AjnI	CCWGG	4 cut(s)	304, 593, 766, 811
AluBI	AGCT	8 cut(s)	353, 379, 390, 411, 864, 883, 1070, 1192
AluI	AGCT	8 cut(s)	353, 379, 390, 411, 864, 883, 1070, 1192
Alw26I	GTCTC	4 cut(s)	214, 764, 1002, 1188
AlwI	GGATC	3 cut(s)	623, 824, 977
AoxI	GGCC	4 cut(s)	287, 357, 591, 1255
ApeKI	GCWGC	4 cut(s)	80, 132, 1067, 1070
ArsI	GACNNNNNNTTYG	2 cut(s)	742, 774
AseI	ATTAAT	1 cut(s)	606
AspLEI	GCGC	1 cut(s)	1220
AspS9I	GGNCC	1 cut(s)	1255
AsuC2I	CCSGG	2 cut(s)	987, 1075
AsuHPI	GGTGA	2 cut(s)	98, 238
BarI	GAAGNNNNNNTAC	2 cut(s)	494, 526
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	4 cut(s)	92, 144, 1057, 1079
BccI	CCATC	4 cut(s)	74, 199, 269, 1118
BceAI	ACGGC	2 cut(s)	145, 166
BciT130I	CCWGG	4 cut(s)	306, 595, 768, 813
BciVI	GTATCC	1 cut(s)	1121
BclI	TGATCA	2 cut(s)	847, 871
BcnI	CCSGG	2 cut(s)	987, 1075
BcoDI	GTCTC	4 cut(s)	214, 764, 1002, 1188
BfaI	CTAG	4 cut(s)	234, 255, 615, 719
BfuAI	ACCTGC	1 cut(s)	74
BfuI	GTATCC	1 cut(s)	1121
BglII	AGATCT	1 cut(s)	1209
BisI	GCNGC	4 cut(s)	81, 133, 1068, 1071
BlsI	GCNGC	4 cut(s)	82, 134, 1069, 1072
Bme1390I	CCNGG	6 cut(s)	306, 595, 768, 813, 987, 1075
BmgT120I	GGNCC	1 cut(s)	1255
BmiI	GGNNCC	2 cut(s)	310, 491
BmrFI	CCNGG	6 cut(s)	306, 595, 768, 813, 987, 1075
BmsI	GCATC	3 cut(s)	16, 608, 913
BplI	GAGNNNNNCTC	2 cut(s)	999, 1031
BpmI	CTGGAG	1 cut(s)	579
Bpu10I	CCTNAGC	1 cut(s)	354
BpuMI	CCSGG	2 cut(s)	987, 1075
Bsa29I	ATCGAT	1 cut(s)	819
BsaBI	GATNNNNATC	3 cut(s)	622, 876, 953
BsaJI	CCNNGG	6 cut(s)	238, 249, 304, 594, 812, 1074
Bsc4I	CCNNNNNNNGG	1 cut(s)	706
Bse1I	ACTGG	3 cut(s)	170, 562, 905
Bse8I	GATNNNNATC	3 cut(s)	622, 876, 953
BseBI	CCWGG	4 cut(s)	306, 595, 768, 813
BseCI	ATCGAT	1 cut(s)	819
BseDI	CCNNGG	6 cut(s)	238, 249, 304, 594, 812, 1074
BseGI	GGATG	5 cut(s)	7, 66, 759, 915, 1243
BseJI	GATNNNNATC	3 cut(s)	622, 876, 953
BseLI	CCNNNNNNNGG	1 cut(s)	706
BseMII	CTCAG	3 cut(s)	209, 345, 1133
BseNI	ACTGG	3 cut(s)	170, 562, 905
BseRI	GAGGAG	2 cut(s)	1074, 1077
BseXI	GCAGC	4 cut(s)	92, 144, 1057, 1079
Bsh1236I	CGCG	3 cut(s)	225, 959, 1220
BshFI	GGCC	4 cut(s)	289, 359, 593, 1257
BshVI	ATCGAT	1 cut(s)	819
BsiSI	CCGG	2 cut(s)	987, 1074
BslFI	GGGAC	3 cut(s)	48, 1092, 1137
BslI	CCNNNNNNNGG	1 cut(s)	706
BsmAI	GTCTC	4 cut(s)	214, 764, 1002, 1188
BsmFI	GGGAC	3 cut(s)	48, 1092, 1137
BsnI	GGCC	4 cut(s)	289, 359, 593, 1257
Bsp143I	GATC	6 cut(s)	628, 816, 847, 871, 982, 1209
BspACI	CCGC	4 cut(s)	223, 528, 959, 1220
BspANI	GGCC	4 cut(s)	289, 359, 593, 1257
BspCNI	CTCAG	3 cut(s)	208, 346, 1134
BspDI	ATCGAT	1 cut(s)	819
BspFNI	CGCG	3 cut(s)	225, 959, 1220
BspLI	GGNNCC	2 cut(s)	310, 491
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	3 cut(s)	623, 824, 977
BspQI	GCTCTTC	2 cut(s)	27, 1022
BsrI	ACTGG	3 cut(s)	170, 562, 905
BssECI	CCNNGG	6 cut(s)	238, 249, 304, 594, 812, 1074
BssMI	GATC	6 cut(s)	628, 816, 847, 871, 982, 1209
Bst2UI	CCWGG	4 cut(s)	306, 595, 768, 813
Bst4CI	ACNGT	5 cut(s)	250, 429, 832, 1027, 1182
Bst6I	CTCTTC	4 cut(s)	27, 297, 1022, 1239
BstC8I	GCNNGC	1 cut(s)	885
BstDEI	CTNAG	3 cut(s)	195, 354, 1142
BstDSI	CCRYGG	2 cut(s)	238, 249
BstF5I	GGATG	5 cut(s)	7, 66, 759, 915, 1243
BstFNI	CGCG	3 cut(s)	225, 959, 1220
BstHHI	GCGC	1 cut(s)	1220
BstKTI	GATC	6 cut(s)	631, 819, 850, 874, 985, 1212
BstMAI	GTCTC	4 cut(s)	214, 764, 1002, 1188
BstMBI	GATC	6 cut(s)	628, 816, 847, 871, 982, 1209
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	4 cut(s)	306, 595, 768, 813
BstNSI	RCATGY	1 cut(s)	680
BstSCI	CCNGG	6 cut(s)	304, 593, 766, 811, 985, 1073
BstUI	CGCG	3 cut(s)	225, 959, 1220
BstV1I	GCAGC	4 cut(s)	92, 144, 1057, 1079
BstX2I	RGATCY	3 cut(s)	628, 982, 1209
BstYI	RGATCY	3 cut(s)	628, 982, 1209
Bsu15I	ATCGAT	1 cut(s)	819
BsuI	GTATCC	1 cut(s)	1121
BsuRI	GGCC	4 cut(s)	289, 359, 593, 1257
BsuTUI	ATCGAT	1 cut(s)	819
BtgI	CCRYGG	2 cut(s)	238, 249
BtgZI	GCGATG	1 cut(s)	940
BtsCI	GGATG	5 cut(s)	7, 66, 759, 915, 1243
BtsIMutI	CAGTG	3 cut(s)	277, 555, 1098
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	885
CfoI	GCGC	1 cut(s)	1220
Cfr13I	GGNCC	1 cut(s)	1255
ClaI	ATCGAT	1 cut(s)	819
Csp6I	GTAC	1 cut(s)	1030
CviAII	CATG	6 cut(s)	71, 172, 521, 677, 975, 1108
CviQI	GTAC	1 cut(s)	1030
DdeI	CTNAG	3 cut(s)	195, 354, 1142
DpnI	GATC	6 cut(s)	630, 818, 849, 873, 984, 1211
DpnII	GATC	6 cut(s)	628, 816, 847, 871, 982, 1209
Eam1104I	CTCTTC	4 cut(s)	27, 297, 1022, 1239
EarI	CTCTTC	4 cut(s)	27, 297, 1022, 1239
Eco147I	AGGCCT	1 cut(s)	289
Eco57I	CTGAAG	4 cut(s)	278, 469, 618, 1122
EcoRII	CCWGG	4 cut(s)	304, 593, 766, 811
FaeI	CATG	6 cut(s)	74, 175, 524, 680, 978, 1111
FalI	AAGNNNNNCTT	2 cut(s)	1028, 1060
FaqI	GGGAC	3 cut(s)	48, 1092, 1137
FatI	CATG	6 cut(s)	70, 171, 520, 676, 974, 1107
FbaI	TGATCA	2 cut(s)	847, 871
Fnu4HI	GCNGC	4 cut(s)	81, 133, 1068, 1071
FokI	GGATG	4 cut(s)	53, 766, 902, 1250
Fsp4HI	GCNGC	4 cut(s)	81, 133, 1068, 1071
FspBI	CTAG	4 cut(s)	234, 255, 615, 719
GlaI	GCGC	1 cut(s)	1219
GluI	GCNGC	4 cut(s)	81, 133, 1068, 1071
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	4 cut(s)	289, 359, 593, 1257
HapII	CCGG	2 cut(s)	987, 1074
HhaI	GCGC	1 cut(s)	1220
Hin1II	CATG	6 cut(s)	74, 175, 524, 680, 978, 1111
Hin6I	GCGC	1 cut(s)	1218
HinP1I	GCGC	1 cut(s)	1218
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	7 cut(s)	243, 757, 808, 1112, 1144, 1150, 1201
HpaI	GTTAAC	1 cut(s)	538
HpaII	CCGG	2 cut(s)	987, 1074
HphI	GGTGA	2 cut(s)	98, 238
Hpy166II	GTNNAC	3 cut(s)	397, 538, 1030
Hpy188III	TCNNGA	5 cut(s)	487, 636, 719, 845, 892
Hpy8I	GTNNAC	3 cut(s)	397, 538, 1030
HpyAV	CCTTC	6 cut(s)	21, 441, 496, 633, 642, 1097
HpyCH4III	ACNGT	5 cut(s)	250, 429, 832, 1027, 1182
HpyCH4V	TGCA	3 cut(s)	115, 146, 926
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	3 cut(s)	195, 354, 1142
Hsp92II	CATG	6 cut(s)	74, 175, 524, 680, 978, 1111
HspAI	GCGC	1 cut(s)	1218
Ksp22I	TGATCA	2 cut(s)	847, 871
KspAI	GTTAAC	1 cut(s)	538
Kzo9I	GATC	6 cut(s)	628, 816, 847, 871, 982, 1209
LguI	GCTCTTC	2 cut(s)	27, 1022
LmnI	GCTCC	2 cut(s)	314, 1064
Lsp1109I	GCAGC	4 cut(s)	92, 144, 1057, 1079
LweI	GCATC	3 cut(s)	16, 608, 913
MaeI	CTAG	4 cut(s)	234, 255, 615, 719
MaeIII	GTNAC	3 cut(s)	281, 506, 523
MalI	GATC	6 cut(s)	630, 818, 849, 873, 984, 1211
MboI	GATC	6 cut(s)	628, 816, 847, 871, 982, 1209
MflI	RGATCY	3 cut(s)	628, 982, 1209
MluCI	AATT	3 cut(s)	33, 436, 585
MlyI	GAGTC	5 cut(s)	237, 766, 1106, 1153, 1159
MmeI	TCCRAC	1 cut(s)	318
MseI	TTAA	5 cut(s)	330, 375, 386, 537, 606
MslI	CAYNNNNRTG	1 cut(s)	176
MspA1I	CMGCKG	2 cut(s)	530, 1070
MspI	CCGG	2 cut(s)	987, 1074
MspR9I	CCNGG	6 cut(s)	306, 595, 768, 813, 987, 1075
MvaI	CCWGG	4 cut(s)	306, 595, 768, 813
MvnI	CGCG	3 cut(s)	225, 959, 1220
MwoI	GCNNNNNNNGC	1 cut(s)	159
NciI	CCSGG	2 cut(s)	987, 1075
NdeII	GATC	6 cut(s)	628, 816, 847, 871, 982, 1209
NlaIII	CATG	6 cut(s)	74, 175, 524, 680, 978, 1111
NlaIV	GGNNCC	2 cut(s)	310, 491
NspI	RCATGY	1 cut(s)	680
PaqCI	CACCTGC	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	289
PciI	ACATGT	1 cut(s)	676
PciSI	GCTCTTC	2 cut(s)	27, 1022
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	808, 1201
PflMI	CCANNNNNTGG	1 cut(s)	706
PkrI	GCNGC	4 cut(s)	82, 134, 1069, 1072
PleI	GAGTC	5 cut(s)	237, 765, 1106, 1152, 1158
PpsI	GAGTC	5 cut(s)	237, 765, 1106, 1152, 1158
PscI	ACATGT	1 cut(s)	676
PshBI	ATTAAT	1 cut(s)	606
PsiI	TTATAA	2 cut(s)	38, 774
Psp6I	CCWGG	4 cut(s)	304, 593, 766, 811
PspGI	CCWGG	4 cut(s)	304, 593, 766, 811
PspN4I	GGNNCC	2 cut(s)	310, 491
PspPI	GGNCC	1 cut(s)	1255
PsuI	RGATCY	3 cut(s)	628, 982, 1209
PvuII	CAGCTG	1 cut(s)	1070
RsaI	GTAC	1 cut(s)	1031
RsaNI	GTAC	1 cut(s)	1030
RseI	CAYNNNNRTG	1 cut(s)	176
SapI	GCTCTTC	2 cut(s)	27, 1022
SaqAI	TTAA	5 cut(s)	330, 375, 386, 537, 606
SatI	GCNGC	4 cut(s)	81, 133, 1068, 1071
Sau3AI	GATC	6 cut(s)	628, 816, 847, 871, 982, 1209
Sau96I	GGNCC	1 cut(s)	1255
SchI	GAGTC	5 cut(s)	237, 766, 1106, 1153, 1159
ScrFI	CCNGG	6 cut(s)	306, 595, 768, 813, 987, 1075
SfaNI	GCATC	3 cut(s)	16, 608, 913
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	33, 436, 585
SseBI	AGGCCT	1 cut(s)	289
SsiI	CCGC	4 cut(s)	223, 528, 959, 1220
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	4 cut(s)	234, 255, 615, 719
StuI	AGGCCT	1 cut(s)	289
StyD4I	CCNGG	6 cut(s)	304, 593, 766, 811, 985, 1073
TaaI	ACNGT	5 cut(s)	250, 429, 832, 1027, 1182
TaqI	TCGA	2 cut(s)	819, 893
TasI	AATT	3 cut(s)	33, 436, 585
TatI	WGTACW	1 cut(s)	1029
TfiI	GAWTC	2 cut(s)	808, 1201
Tru1I	TTAA	5 cut(s)	330, 375, 386, 537, 606
Tru9I	TTAA	5 cut(s)	330, 375, 386, 537, 606
TscAI	CASTG	3 cut(s)	277, 562, 1105
TseI	GCWGC	4 cut(s)	80, 132, 1067, 1070
TspDTI	ATGAA	5 cut(s)	17, 85, 554, 824, 943
TspGWI	ACGGA	2 cut(s)	255, 1109
TspRI	CASTG	3 cut(s)	277, 562, 1105
Van91I	CCANNNNNTGG	1 cut(s)	706
VspI	ATTAAT	1 cut(s)	606
XbaI	TCTAGA	1 cut(s)	718
XceI	RCATGY	1 cut(s)	680
XspI	CTAG	4 cut(s)	234, 255, 615, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.