pycom15g24900

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0009363
Physical Location & Seq
Reverse (-)
19202636 .. 19204314
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g24900.3

Sequence Viewer

Length: 861 bp
ATGCAGAAGAGGCAGAAGAAAATGGTGATTTCTGATTCCGATTCCATTGTCAATGCTGGTCTCTGTTCAAGTGATATGAAGCTTAGATCTAATTCATGCAAGGATAATGAAGACACTAGTTCTTCTTCACAAAAGAATCTGAAATCTTCTACCAGTGGAGGGTTTAGGAGGCGGGAATCACCTGCTAAGGGCAGCAACAAAGTTGTTCAGGGTGAATCTCCTGATGGTGCACCGGATGAGATGATTGCTGATCCACCTGCTACAAGTAGTGATGACATTTTGAGGAGAGAAGAATGTGTTGATGAAAACATATATAAACAAGAATTAAGTGATGATAAAACATGGAAAACTATTGAGAAGGGCCTTTTTGAGAAAGGCATAGAGATATTTGGCAGCAACAGCTGCTTAATAGCAAGGAACCTTTTAAATGGTATGAAAACGTGTTGGGAGGTTTTTCAGTATATGAATTACTCAGAGAGTAAGATGTCCTGCCAAGCAGGTGATGCTGCAAACTCCCTTGTTGAAGGGTATTCCAAGGGTAATAATGAAGCAAGAAGGAGATCGAAATTTTTACGTAGAAGGGGTAGAGTTCGTCGTTTGAAGTATACTTGGAAATCTGCTGCTTACCACTCAATCCGGAAACGAATTACTGAGAGAAAAGATCAGCCTTGCAGGCAGTATAATCCATGTACTTGCCAAACAGCTTGTGGAAAGCAGTGTTCTTGTCTACAAAATGGGACTTGTTGCGAGAAGTACTGTGGGTGTCCAAAGACTTGCAAGAATAGATTTAGAGGTTGTCATTGTGCTAAAAGTCAATGCCGAAGCCGTCAGTGTCCTTGTTTTGCTGCAGACAGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006139 GO:0006325 GO:0006342 GO:0006349 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009292 GO:0009294 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009965 GO:0009987 GO:0010016 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016278 GO:0016279 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0017053 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0040030 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044764 GO:0045814 GO:0045857 GO:0045892 GO:0045934 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048586 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0070734 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0099402 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko00310 ko05206 map00310 map05206
Pfam Domains
Protein Families
SET

Protein Analysis

287

Amino Acids

32.31

Weight (kDa)

9.19

Isoelectric Point (pI)

72.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 190, 265, 488
Acc36I ACCTGC 3 cut(s) 190, 265, 488
AccI GTMKAC 2 cut(s) 605, 727
AccIII TCCGGA 1 cut(s) 636
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 566
AfaI GTAC 2 cut(s) 691, 755
AfiI CCNNNNNNNGG 2 cut(s) 159, 188
AflIII ACRYGT 1 cut(s) 440
AgsI TTSAA 3 cut(s) 69, 524, 601
AhlI ACTAGT 1 cut(s) 116
AluBI AGCT 3 cut(s) 82, 402, 704
AluI AGCT 3 cut(s) 82, 402, 704
Alw21I GWGCWC 1 cut(s) 232
Alw26I GTCTC 1 cut(s) 65
Alw44I GTGCAC 1 cut(s) 228
AlwI GGATC 1 cut(s) 245
Aor13HI TCCGGA 1 cut(s) 636
AoxI GGCC 1 cut(s) 361
ApaLI GTGCAC 1 cut(s) 228
ApeKI GCWGC 6 cut(s) 192, 393, 402, 506, 620, 845
ApoI RAATTY 1 cut(s) 566
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 4 cut(s) 37, 171, 224, 512
BaeGI GKGCMC 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 232
BbvI GCAGC 6 cut(s) 204, 389, 405, 493, 607, 832
BccI CCATC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 810
BcoDI GTCTC 1 cut(s) 65
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 1 cut(s) 117
BfmI CTRYAG 1 cut(s) 846
BfuAI ACCTGC 3 cut(s) 190, 265, 488
BglI GCCNNNNNGGC 1 cut(s) 673
BglII AGATCT 1 cut(s) 86
BisI GCNGC 6 cut(s) 193, 394, 403, 507, 621, 846
BlsI GCNGC 6 cut(s) 194, 395, 404, 508, 622, 847
BmcAI AGTACT 1 cut(s) 755
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 419
BmsI GCATC 1 cut(s) 493
BpiI GAAGAC 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 186
BsaAI YACGTR 1 cut(s) 575
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 534
BsaWI WCCGGW 2 cut(s) 232, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 188
Bse1I ACTGG 1 cut(s) 153
BseAI TCCGGA 1 cut(s) 636
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 2 cut(s) 159, 188
BseMII CTCAG 2 cut(s) 486, 642
BseNI ACTGG 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 298
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 6 cut(s) 204, 389, 405, 493, 607, 832
BshFI GGCC 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 232
BsiSI CCGG 2 cut(s) 233, 637
BslFI GGGAC 1 cut(s) 751
BslI CCNNNNNNNGG 2 cut(s) 159, 188
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 751
BsnI GGCC 1 cut(s) 363
Bso31I GGTCTC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 232
Bsp13I TCCGGA 1 cut(s) 636
Bsp143I GATC 4 cut(s) 86, 250, 560, 661
BspACI CCGC 1 cut(s) 172
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 2 cut(s) 485, 643
BspEI TCCGGA 1 cut(s) 636
BspLI GGNNCC 1 cut(s) 419
BspMAI CTGCAG 1 cut(s) 850
BspMI ACCTGC 3 cut(s) 190, 265, 488
BspPI GGATC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 65
BsrI ACTGG 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 4 cut(s) 86, 250, 560, 661
BssNAI GTATAC 1 cut(s) 606
BssT1I CCWWGG 1 cut(s) 534
Bst1107I GTATAC 1 cut(s) 606
Bst4CI ACNGT 1 cut(s) 758
Bst6I CTCTTC 1 cut(s) 2
BstAPI GCANNNNNTGC 2 cut(s) 402, 503
BstBAI YACGTR 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 674
BstDEI CTNAG 4 cut(s) 83, 186, 472, 651
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 4 cut(s) 89, 253, 563, 664
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 4 cut(s) 86, 250, 560, 661
BstMWI GCNNNNNNNGC 5 cut(s) 10, 399, 402, 503, 673
BstSFI CTRYAG 1 cut(s) 846
BstSLI GKGCMC 1 cut(s) 232
BstSNI TACGTA 1 cut(s) 575
BstV1I GCAGC 6 cut(s) 204, 389, 405, 493, 607, 832
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
BstZ17I GTATAC 1 cut(s) 606
BsuRI GGCC 1 cut(s) 363
BtsCI GGATG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 722
BtsIMutI CAGTG 3 cut(s) 160, 722, 836
BveI ACCTGC 3 cut(s) 190, 265, 488
Cac8I GCNNGC 1 cut(s) 674
Cfr13I GGNCC 1 cut(s) 361
Csp6I GTAC 2 cut(s) 690, 754
CviAII CATG 3 cut(s) 96, 342, 687
CviJI RGCY 6 cut(s) 82, 363, 402, 667, 704, 825
CviKI_1 RGCY 6 cut(s) 82, 363, 402, 667, 704, 825
CviQI GTAC 2 cut(s) 690, 754
DdeI CTNAG 4 cut(s) 83, 186, 472, 651
DpnI GATC 4 cut(s) 88, 252, 562, 663
DpnII GATC 4 cut(s) 86, 250, 560, 661
DraI TTTAAA 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Eco105I TACGTA 1 cut(s) 575
Eco130I CCWWGG 1 cut(s) 534
Eco31I GGTCTC 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 3 cut(s) 99, 345, 690
FaqI GGGAC 1 cut(s) 751
FatI CATG 3 cut(s) 95, 341, 686
FauI CCCGC 1 cut(s) 165
FblI GTMKAC 2 cut(s) 605, 727
Fnu4HI GCNGC 6 cut(s) 193, 394, 403, 507, 621, 846
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 6 cut(s) 193, 394, 403, 507, 621, 846
FspBI CTAG 1 cut(s) 117
GluI GCNGC 6 cut(s) 193, 394, 403, 507, 621, 846
HaeIII GGCC 1 cut(s) 363
HapII CCGG 2 cut(s) 233, 637
Hin1II CATG 3 cut(s) 99, 345, 690
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 5 cut(s) 35, 41, 136, 176, 215
HpaII CCGG 2 cut(s) 233, 637
HphI GGTGA 4 cut(s) 37, 171, 224, 512
Hpy166II GTNNAC 3 cut(s) 230, 606, 728
Hpy188I TCNGA 4 cut(s) 34, 40, 141, 475
Hpy188III TCNNGA 2 cut(s) 221, 637
Hpy8I GTNNAC 3 cut(s) 230, 606, 728
Hpy99I CGWCG 1 cut(s) 597
HpyAV CCTTC 4 cut(s) 352, 518, 549, 573
HpyCH4III ACNGT 1 cut(s) 758
HpyCH4IV ACGT 2 cut(s) 440, 574
HpyCH4V TGCA 7 cut(s) 4, 99, 230, 509, 672, 777, 848
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 399, 402, 503, 673
HpyF3I CTNAG 4 cut(s) 83, 186, 472, 651
HpySE526I ACGT 2 cut(s) 440, 574
Hsp92II CATG 3 cut(s) 99, 345, 690
Kpn2I TCCGGA 1 cut(s) 636
Kzo9I GATC 4 cut(s) 86, 250, 560, 661
Lsp1109I GCAGC 6 cut(s) 204, 389, 405, 493, 607, 832
LweI GCATC 1 cut(s) 493
MaeI CTAG 1 cut(s) 117
MaeII ACGT 2 cut(s) 440, 574
MalI GATC 4 cut(s) 88, 252, 562, 663
MboI GATC 4 cut(s) 86, 250, 560, 661
MboII GAAGA 7 cut(s) 19, 28, 114, 117, 122, 138, 302
MflI RGATCY 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 5 cut(s) 91, 323, 466, 566, 645
MnlI CCTC 6 cut(s) 3, 152, 162, 276, 442, 785
MroI TCCGGA 1 cut(s) 636
MseI TTAA 3 cut(s) 326, 407, 425
MspA1I CMGCKG 1 cut(s) 402
MspI CCGG 2 cut(s) 233, 637
MwoI GCNNNNNNNGC 5 cut(s) 10, 399, 402, 503, 673
NdeII GATC 4 cut(s) 86, 250, 560, 661
NlaIII CATG 3 cut(s) 99, 345, 690
NlaIV GGNNCC 1 cut(s) 419
PaqCI CACCTGC 3 cut(s) 190, 265, 488
PfeI GAWTC 5 cut(s) 35, 41, 136, 176, 215
PkrI GCNGC 6 cut(s) 194, 395, 404, 508, 622, 847
Ppu21I YACGTR 1 cut(s) 575
PspN4I GGNNCC 1 cut(s) 419
PspPI GGNCC 1 cut(s) 361
PstI CTGCAG 1 cut(s) 850
PsuI RGATCY 1 cut(s) 86
PvuII CAGCTG 1 cut(s) 402
RsaI GTAC 2 cut(s) 691, 755
RsaNI GTAC 2 cut(s) 690, 754
SaqAI TTAA 3 cut(s) 326, 407, 425
SatI GCNGC 6 cut(s) 193, 394, 403, 507, 621, 846
Sau3AI GATC 4 cut(s) 86, 250, 560, 661
Sau96I GGNCC 1 cut(s) 361
ScaI AGTACT 1 cut(s) 755
SduI GDGCHC 1 cut(s) 232
SfaNI GCATC 1 cut(s) 493
SfcI CTRYAG 1 cut(s) 846
SnaBI TACGTA 1 cut(s) 575
SpeI ACTAGT 1 cut(s) 116
Sse9I AATT 5 cut(s) 91, 323, 466, 566, 645
SsiI CCGC 1 cut(s) 172
SspMI CTAG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 1 cut(s) 758
TaiI ACGT 2 cut(s) 443, 577
TaqI TCGA 1 cut(s) 563
TasI AATT 5 cut(s) 91, 323, 466, 566, 645
TatI WGTACW 2 cut(s) 689, 753
TfiI GAWTC 5 cut(s) 35, 41, 136, 176, 215
Tru1I TTAA 3 cut(s) 326, 407, 425
Tru9I TTAA 3 cut(s) 326, 407, 425
TscAI CASTG 3 cut(s) 160, 722, 836
TseI GCWGC 6 cut(s) 192, 393, 402, 506, 620, 845
TspDTI ATGAA 7 cut(s) 84, 92, 123, 318, 449, 479, 561
TspRI CASTG 3 cut(s) 160, 722, 836
VneI GTGCAC 1 cut(s) 228
XapI RAATTY 1 cut(s) 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 704
XmiI GTMKAC 2 cut(s) 605, 727
XspI CTAG 1 cut(s) 117
ZrmI AGTACT 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.