Rorug02G0132700

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009363
Physical Location & Seq
Reverse (-)
11475564 .. 11476681
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0132700.1

Sequence Viewer

Length: 381 bp
ATGGGGGGGTCGGAGTTTGTGATCGTTACGGTGGCGGCGGTTCTGCTGTTGTTGGGAAACGACGTCGTTGAGGCTTCGAGCTCACCATCGGCGTTTGTGCAGAACGTCATCTACTCCAACAAGATTGCCATCTTCTCCAAATCGTATTGCCCGTATTGCTTGCGTGCCAAGCGCATATTCGGTGAATTACATGAGCAACCTTATGTTGTAGAACTTGATCTTCGAGATGATGGGGGGCAAATTCAGAGTGTTCTTCTAGATGTGGTAGGCCGATCCACTGTCCCACAAGTATTTGTGAATGGCAAGCACATCGGTGGTTCTGATGATCTCAAAGCCGCTGTTGCGAGTGGCCAACTTCAGAAGCTTCTTAGTATAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006139 GO:0006325 GO:0006342 GO:0006349 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009292 GO:0009294 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009965 GO:0009987 GO:0010016 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016278 GO:0016279 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0017053 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0040030 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044764 GO:0045814 GO:0045857 GO:0045892 GO:0045934 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048586 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0070734 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0099402 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko00310 ko05206 map00310 map05206
Pfam Domains
Protein Families
SET

Protein Analysis

126

Amino Acids

13.47

Weight (kDa)

5.56

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 42 - 104 1.8e-16 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 66
AciI CCGC 3 cut(s) 35, 38, 336
AclWI GGATC 1 cut(s) 267
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 63
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AleI CACNNNNGTG 1 cut(s) 312
AluBI AGCT 2 cut(s) 81, 364
AluI AGCT 2 cut(s) 81, 364
Alw21I GWGCWC 1 cut(s) 83
AlwI GGATC 1 cut(s) 267
AoxI GGCC 2 cut(s) 268, 349
ApoI RAATTY 1 cut(s) 240
AspLEI GCGC 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 75, 194
BalI TGGCCA 1 cut(s) 351
BanII GRGCYC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 83
BccI CCATC 3 cut(s) 94, 137, 224
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BfaI CTAG 1 cut(s) 257
BisI GCNGC 2 cut(s) 36, 336
BlsI GCNGC 2 cut(s) 37, 337
BsaBI GATNNNNATC 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 63
Bse8I GATNNNNATC 1 cut(s) 128
BseJI GATNNNNATC 1 cut(s) 128
BsgI GTGCAG 1 cut(s) 119
BshFI GGCC 2 cut(s) 270, 351
BsiHKAI GWGCWC 1 cut(s) 83
BslFI GGGAC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 2 cut(s) 270, 351
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 4 cut(s) 21, 217, 272, 325
BspACI CCGC 3 cut(s) 35, 38, 336
BspANI GGCC 2 cut(s) 270, 351
BspPI GGATC 1 cut(s) 267
BssMI GATC 4 cut(s) 21, 217, 272, 325
BssNI GRCGYC 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 31, 280
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 3 cut(s) 161, 165, 305
BstDEI CTNAG 1 cut(s) 368
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 4 cut(s) 24, 220, 275, 328
BstMBI GATC 4 cut(s) 21, 217, 272, 325
BstMWI GCNNNNNNNGC 3 cut(s) 156, 169, 341
BsuRI GGCC 2 cut(s) 270, 351
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 3 cut(s) 161, 165, 305
CfoI GCGC 1 cut(s) 174
CviAII CATG 1 cut(s) 191
CviJI RGCY 6 cut(s) 74, 81, 270, 335, 351, 364
CviKI_1 RGCY 6 cut(s) 74, 81, 270, 335, 351, 364
DdeI CTNAG 1 cut(s) 368
DpnI GATC 4 cut(s) 23, 219, 274, 327
DpnII GATC 4 cut(s) 21, 217, 272, 325
EaeI YGGCCR 1 cut(s) 349
Ecl136II GAGCTC 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 83
Eco53kI GAGCTC 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 83
FaeI CATG 1 cut(s) 194
FaiI YATR 4 cut(s) 176, 192, 204, 374
FaqI GGGAC 1 cut(s) 266
FatI CATG 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 36, 336
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 2 cut(s) 36, 336
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 173
GluI GCNGC 2 cut(s) 36, 336
HaeIII GGCC 2 cut(s) 270, 351
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 1 cut(s) 194
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 362
HphI GGTGA 2 cut(s) 75, 194
Hpy188I TCNGA 4 cut(s) 13, 246, 322, 360
Hpy188III TCNNGA 2 cut(s) 224, 257
Hpy99I CGWCG 2 cut(s) 65, 68
HpyCH4III ACNGT 2 cut(s) 31, 280
HpyCH4IV ACGT 2 cut(s) 63, 105
HpyCH4V TGCA 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 169, 341
HpyF3I CTNAG 1 cut(s) 368
HpySE526I ACGT 2 cut(s) 63, 105
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 1 cut(s) 194
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 4 cut(s) 21, 217, 272, 325
MaeI CTAG 1 cut(s) 257
MaeII ACGT 2 cut(s) 63, 105
MaeIII GTNAC 1 cut(s) 25
MalI GATC 4 cut(s) 23, 219, 274, 327
MboI GATC 4 cut(s) 21, 217, 272, 325
MboII GAAGA 3 cut(s) 124, 212, 245
MhlI GDGCHC 1 cut(s) 83
MlsI TGGCCA 1 cut(s) 351
MluCI AATT 2 cut(s) 185, 240
MluNI TGGCCA 1 cut(s) 351
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 1 cut(s) 64
Mox20I TGGCCA 1 cut(s) 351
MscI TGGCCA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 338
MwoI GCNNNNNNNGC 3 cut(s) 156, 169, 341
NdeII GATC 4 cut(s) 21, 217, 272, 325
NlaIII CATG 1 cut(s) 194
OliI CACNNNNGTG 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PkrI GCNGC 2 cut(s) 37, 337
Psp124BI GAGCTC 1 cut(s) 83
PsrI GAACNNNNNNTAC 2 cut(s) 95, 127
RseI CAYNNNNRTG 1 cut(s) 312
SacI GAGCTC 1 cut(s) 83
SatI GCNGC 2 cut(s) 36, 336
Sau3AI GATC 4 cut(s) 21, 217, 272, 325
SduI GDGCHC 1 cut(s) 83
SetI ASST 5 cut(s) 66, 83, 108, 202, 366
SmiMI CAYNNNNRTG 1 cut(s) 312
Sse9I AATT 2 cut(s) 185, 240
SsiI CCGC 3 cut(s) 35, 38, 336
SspMI CTAG 1 cut(s) 257
SstI GAGCTC 1 cut(s) 83
TaaI ACNGT 2 cut(s) 31, 280
TaiI ACGT 2 cut(s) 66, 108
TaqI TCGA 2 cut(s) 77, 223
TasI AATT 2 cut(s) 185, 240
TauI GCSGC 2 cut(s) 38, 338
TscAI CASTG 1 cut(s) 283
TspRI CASTG 1 cut(s) 283
XapI RAATTY 1 cut(s) 240
XbaI TCTAGA 1 cut(s) 256
XspI CTAG 1 cut(s) 257
ZraI GACGTC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.