Rorug02G0132800

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009363
Physical Location & Seq
Forward (+)
11479034 .. 11480330
1297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0132800.1

Sequence Viewer

Length: 1212 bp
ATGGCTCGTCTCGCCAACGCTTTTGATCTGTTGGGCGAGCAATCATCAGATGTGAGGAGAATGATTGCCATCGTCGATGCGAAAGCAGACGCTGGTTTTCTAGCAGCAGAGAAGAAGAGGAAAGAGGAGGCCAAGGAAGCCGAGAGAAAGAAGGAGGAGGAGAGGCAGCAACAGAAGAAGAAGAATATTCGAGATACCCTACTCAACTCGGTTCTTGCCTTCCCCACTCATCGCCCTTCTTCGTCTAGAAGACGCCCAAATTTTCCTCGAGAATATAATGATGAGCAAAACCAAGGCCAAGGAGTTCATGCCCCTGTCGTTAAAAAAAAGTGGGTGCCAAAGTCGGAGTTGGAGTCAAAATCCGAGAATGGTGCTGCCAAAGCCGCTGCTAGTCCTAGCTCCTCGAATAAAATTCAAGGGACTCAGAAAGAAGAAGCAAAGAATCAGATTCAGAGTCATCAAGGCTATTATCAGCAGAGACGCGGTAGAGGGTTTGGCCACGGTGCTTATCAGAATCGAGGAACAAGGACTGGATCATACTCGGAGCATAGTGACAAGAAGAATGTGCTGGAGTTGGAGAAGGAGAGGGAGACTCAAGGCTGCGATGCTGCTGCGGAAAAGCAACAGACAAAGGAAGCAGTAGATGGAGATAAGCAATCAAAGGAGGAGGGTGTTAATAATGATGGAGATGGTGGTAGCAGCAGCAAGAGTGTTGATGGGAAGAAAAGCCAAAACAAGAATGGAAGCTTGCGAAGAAAACTAAGGAAGCAGAAGGCTGCTGCTGGAGGAGAGAAAAAGGACGGGGAGGACACTAATCAAGAAGGTGATACTAGTAGCGTGCAAAACCAGTCCACTCCTCGTCTGTACACTTTGAAAGAATATGAGGAGATGAAGAAGAGGGAGAGTTTGAACGAGAAAAAAGAAGGTGAGAGTAACTCTGCCCACCCCAAGAGAGTGACTGTTGATGTCAATAAGGAATTTCGAACACCGCAGGTGGATGAGAGGCAACGCGGTTTGGACAATGGAGGGCGGAGATTTAACAATGAAGGGCGGAGATTCAACAACGGAGGGCGCAGGTTTAACAATGAAGGCCGAAGATTTGACAACGGATGGCAGAGTTCTAACAATGAAGGCCGAAGACTTCAATATAGTTTGGACAATGCTGATGAATTTCCTACCCTCGGATTCTCGGAAGAAAATAAAAAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006139 GO:0006325 GO:0006342 GO:0006349 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009292 GO:0009294 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009965 GO:0009987 GO:0010016 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016278 GO:0016279 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0017053 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0040030 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044764 GO:0045814 GO:0045857 GO:0045892 GO:0045934 GO:0046483 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048586 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0070734 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090568 GO:0097159 GO:0099402 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko00310 ko05206 map00310 map05206
Pfam Domains
Protein Families
SET

Protein Analysis

403

Amino Acids

45.5

Weight (kDa)

9.57

Isoelectric Point (pI)

53.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 982
Acc36I ACCTGC 2 cut(s) 982, 1065
AccB1I GGYRCC 1 cut(s) 334
AccII CGCG 2 cut(s) 483, 1011
AciI CCGC 7 cut(s) 384, 483, 614, 989, 1011, 1030, 1051
AclWI GGATC 1 cut(s) 541
AcoI YGGCCR 1 cut(s) 496
AcsI RAATTY 5 cut(s) 259, 411, 977, 1169, 1206
AcyI GRCGYC 1 cut(s) 253
AfaI GTAC 1 cut(s) 866
AfiI CCNNNNNNNGG 1 cut(s) 1181
AgsI TTSAA 5 cut(s) 416, 874, 910, 1060, 1145
AhlI ACTAGT 1 cut(s) 830
AluBI AGCT 2 cut(s) 399, 747
AluI AGCT 2 cut(s) 399, 747
Alw26I GTCTC 3 cut(s) 14, 472, 584
AlwI GGATC 1 cut(s) 541
AlwNI CAGNNNCTG 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 267
AoxI GGCC 5 cut(s) 129, 295, 496, 1090, 1132
ApoI RAATTY 5 cut(s) 259, 411, 977, 1169, 1206
AspLEI GCGC 1 cut(s) 1074
AsuHPI GGTGA 2 cut(s) 836, 938
AsuII TTCGAA 1 cut(s) 982
AvaI CYCGRG 1 cut(s) 267
BalI TGGCCA 1 cut(s) 498
BanI GGYRCC 1 cut(s) 334
BbsI GAAGAC 2 cut(s) 256, 1144
BccI CCATC 6 cut(s) 77, 638, 677, 683, 710, 1104
BcgI CGANNNNNNTGC 4 cut(s) 353, 387, 593, 627
BcoDI GTCTC 3 cut(s) 14, 472, 584
BcuI ACTAGT 1 cut(s) 830
BfaI CTAG 5 cut(s) 101, 246, 390, 396, 831
BfuAI ACCTGC 2 cut(s) 982, 1065
BmeT110I CYCGRG 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 336
BmsI GCATC 2 cut(s) 67, 595
BpiI GAAGAC 2 cut(s) 256, 1144
BplI GAGNNNNNCTC 4 cut(s) 577, 609, 920, 952
BpmI CTGGAG 2 cut(s) 590, 804
Bpu14I TTCGAA 1 cut(s) 982
BpuEI CTTGAG 1 cut(s) 579
BsaBI GATNNNNATC 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 253
BsaJI CCNNGG 5 cut(s) 132, 292, 298, 499, 1180
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 1181
Bse1I ACTGG 2 cut(s) 535, 847
Bse8I GATNNNNATC 1 cut(s) 68
BseDI CCNNGG 5 cut(s) 132, 292, 298, 499, 1180
BseGI GGATG 2 cut(s) 1003, 1115
BseJI GATNNNNATC 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 1181
BseMII CTCAG 1 cut(s) 437
BseNI ACTGG 2 cut(s) 535, 847
BseRI GAGGAG 9 cut(s) 70, 140, 170, 173, 391, 680, 801, 846, 899
Bsh1236I CGCG 2 cut(s) 483, 1011
BshFI GGCC 5 cut(s) 131, 297, 498, 1092, 1134
BshNI GGYRCC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 267
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 1 cut(s) 1181
BsmAI GTCTC 3 cut(s) 14, 472, 584
BsmBI CGTCTC 2 cut(s) 14, 472
BsmFI GGGAC 1 cut(s) 433
BsnI GGCC 5 cut(s) 131, 297, 498, 1092, 1134
BsoBI CYCGRG 1 cut(s) 267
Bsp119I TTCGAA 1 cut(s) 982
Bsp1407I TGTACA 1 cut(s) 864
Bsp143I GATC 2 cut(s) 25, 533
BspACI CCGC 7 cut(s) 384, 483, 614, 989, 1011, 1030, 1051
BspANI GGCC 5 cut(s) 131, 297, 498, 1092, 1134
BspCNI CTCAG 1 cut(s) 436
BspFNI CGCG 2 cut(s) 483, 1011
BspLI GGNNCC 1 cut(s) 336
BspMI ACCTGC 2 cut(s) 982, 1065
BspPI GGATC 1 cut(s) 541
BspT104I TTCGAA 1 cut(s) 982
BspT107I GGYRCC 1 cut(s) 334
BsrGI TGTACA 1 cut(s) 864
BsrI ACTGG 2 cut(s) 535, 847
BssECI CCNNGG 5 cut(s) 132, 292, 298, 499, 1180
BssMI GATC 2 cut(s) 25, 533
BssNI GRCGYC 1 cut(s) 253
BssT1I CCWWGG 3 cut(s) 132, 292, 298
Bst4CI ACNGT 2 cut(s) 503, 961
Bst6I CTCTTC 2 cut(s) 110, 890
BstACI GRCGYC 1 cut(s) 253
BstAUI TGTACA 1 cut(s) 864
BstBI TTCGAA 1 cut(s) 982
BstC8I GCNNGC 3 cut(s) 38, 749, 839
BstDEI CTNAG 2 cut(s) 423, 761
BstDSI CCRYGG 1 cut(s) 499
BstF5I GGATG 2 cut(s) 1003, 1115
BstFNI CGCG 2 cut(s) 483, 1011
BstHHI GCGC 1 cut(s) 1074
BstKTI GATC 2 cut(s) 28, 536
BstMAI GTCTC 3 cut(s) 14, 472, 584
BstMBI GATC 2 cut(s) 25, 533
BstMWI GCNNNNNNNGC 4 cut(s) 11, 137, 380, 383
BstUI CGCG 2 cut(s) 483, 1011
BstV2I GAAGAC 2 cut(s) 256, 1144
BsuRI GGCC 5 cut(s) 131, 297, 498, 1092, 1134
BtgI CCRYGG 1 cut(s) 499
BtgZI GCGATG 2 cut(s) 215, 618
BtsCI GGATG 2 cut(s) 1003, 1115
BveI ACCTGC 2 cut(s) 982, 1065
Cac8I GCNNGC 3 cut(s) 38, 749, 839
CaiI CAGNNNCTG 1 cut(s) 92
CfoI GCGC 1 cut(s) 1074
CseI GACGC 3 cut(s) 98, 261, 489
Csp6I GTAC 1 cut(s) 865
CviAII CATG 1 cut(s) 308
CviQI GTAC 1 cut(s) 865
DdeI CTNAG 2 cut(s) 423, 761
DpnI GATC 2 cut(s) 27, 535
DpnII GATC 2 cut(s) 25, 533
EaeI YGGCCR 1 cut(s) 496
Eam1104I CTCTTC 2 cut(s) 110, 890
EarI CTCTTC 2 cut(s) 110, 890
EciI GGCGGA 2 cut(s) 1045, 1066
Eco130I CCWWGG 3 cut(s) 132, 292, 298
Eco88I CYCGRG 1 cut(s) 267
EcoT14I CCWWGG 3 cut(s) 132, 292, 298
ErhI CCWWGG 3 cut(s) 132, 292, 298
Esp3I CGTCTC 2 cut(s) 14, 472
FaeI CATG 1 cut(s) 311
FaiI YATR 6 cut(s) 276, 309, 538, 549, 882, 1149
FaqI GGGAC 1 cut(s) 433
FatI CATG 1 cut(s) 307
FokI GGATG 2 cut(s) 1010, 1122
FspBI CTAG 5 cut(s) 101, 246, 390, 396, 831
GlaI GCGC 1 cut(s) 1073
GsuI CTGGAG 2 cut(s) 590, 804
HaeIII GGCC 5 cut(s) 131, 297, 498, 1092, 1134
HgaI GACGC 3 cut(s) 98, 261, 489
HhaI GCGC 1 cut(s) 1074
Hin1I GRCGYC 1 cut(s) 253
Hin1II CATG 1 cut(s) 311
Hin6I GCGC 1 cut(s) 1072
HinP1I GCGC 1 cut(s) 1072
HindIII AAGCTT 1 cut(s) 745
HinfI GANTC 9 cut(s) 353, 421, 442, 448, 454, 514, 592, 1056, 1185
HphI GGTGA 2 cut(s) 836, 938
Hpy166II GTNNAC 2 cut(s) 852, 867
Hpy188III TCNNGA 4 cut(s) 191, 246, 269, 818
Hpy8I GTNNAC 2 cut(s) 852, 867
Hpy99I CGWCG 1 cut(s) 77
HpyCH4III ACNGT 2 cut(s) 503, 961
HpyCH4V TGCA 1 cut(s) 841
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 137, 380, 383
HpyF3I CTNAG 2 cut(s) 423, 761
Hsp92I GRCGYC 1 cut(s) 253
Hsp92II CATG 1 cut(s) 311
HspAI GCGC 1 cut(s) 1072
Kzo9I GATC 2 cut(s) 25, 533
LmnI GCTCC 2 cut(s) 404, 544
LpnPI CCDG 8 cut(s) 78, 327, 516, 554, 768, 860, 977, 1060
LweI GCATC 2 cut(s) 67, 595
MaeI CTAG 5 cut(s) 101, 246, 390, 396, 831
MaeIII GTNAC 3 cut(s) 551, 932, 955
MalI GATC 2 cut(s) 27, 535
MboI GATC 2 cut(s) 25, 533
MlsI TGGCCA 1 cut(s) 498
MluCI AATT 5 cut(s) 259, 411, 977, 1169, 1206
MluNI TGGCCA 1 cut(s) 498
MlyI GAGTC 4 cut(s) 362, 415, 463, 586
MmeI TCCRAC 3 cut(s) 324, 330, 555
Mox20I TGGCCA 1 cut(s) 498
MscI TGGCCA 1 cut(s) 498
MseI TTAA 5 cut(s) 321, 675, 1038, 1080, 1210
Msp20I TGGCCA 1 cut(s) 498
MspA1I CMGCKG 1 cut(s) 386
MvnI CGCG 2 cut(s) 483, 1011
MwoI GCNNNNNNNGC 4 cut(s) 11, 137, 380, 383
NdeII GATC 2 cut(s) 25, 533
NlaIII CATG 1 cut(s) 311
NlaIV GGNNCC 1 cut(s) 336
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 2 cut(s) 551, 955
NspV TTCGAA 1 cut(s) 982
PaeR7I CTCGAG 1 cut(s) 267
PaqCI CACCTGC 1 cut(s) 982
PfeI GAWTC 5 cut(s) 442, 448, 514, 1056, 1185
PleI GAGTC 4 cut(s) 361, 415, 462, 586
PpsI GAGTC 4 cut(s) 361, 415, 462, 586
PspN4I GGNNCC 1 cut(s) 336
PstNI CAGNNNCTG 1 cut(s) 92
RsaI GTAC 1 cut(s) 866
RsaNI GTAC 1 cut(s) 865
SaqAI TTAA 5 cut(s) 321, 675, 1038, 1080, 1210
Sau3AI GATC 1 cut(s) 25
SchI GAGTC 4 cut(s) 362, 415, 463, 586
SetI ASST 6 cut(s) 401, 749, 826, 928, 996, 1079
SfaNI GCATC 2 cut(s) 67, 595
Sfr274I CTCGAG 1 cut(s) 267
SfuI TTCGAA 1 cut(s) 982
SlaI CTCGAG 1 cut(s) 267
SmlI CTYRAG 2 cut(s) 267, 594
SmoI CTYRAG 2 cut(s) 267, 594
SpeI ACTAGT 1 cut(s) 830
Sse9I AATT 5 cut(s) 259, 411, 977, 1169, 1206
SsiI CCGC 7 cut(s) 384, 483, 614, 989, 1011, 1030, 1051
SspI AATATT 1 cut(s) 187
SspMI CTAG 5 cut(s) 101, 246, 390, 396, 831
StyI CCWWGG 3 cut(s) 132, 292, 298
TaaI ACNGT 2 cut(s) 503, 961
TaqI TCGA 6 cut(s) 75, 190, 268, 404, 517, 982
TasI AATT 5 cut(s) 259, 411, 977, 1169, 1206
TatI WGTACW 1 cut(s) 864
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 5 cut(s) 442, 448, 514, 1056, 1185
Tru1I TTAA 5 cut(s) 321, 675, 1038, 1080, 1210
Tru9I TTAA 5 cut(s) 321, 675, 1038, 1080, 1210
TseFI GTSAC 2 cut(s) 551, 955
Tsp45I GTSAC 2 cut(s) 551, 955
TspDTI ATGAA 6 cut(s) 296, 905, 1059, 1101, 1143, 1182
TspGWI ACGGA 2 cut(s) 1080, 1122
XapI RAATTY 5 cut(s) 259, 411, 977, 1169, 1206
XbaI TCTAGA 1 cut(s) 245
XcmI CCANNNNNNNNNTGG 1 cut(s) 737
XhoI CTCGAG 1 cut(s) 267
XspI CTAG 5 cut(s) 101, 246, 390, 396, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.