Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011135

Physical Location & Seq

Genomic Coordinates Forward (+)

21296120 .. 21297004

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGTGAACCTACAGAAAAGCCGCCCAAGGAAATTGAAAGCGAAGACGAAGAGGACCAGAACTTCGATACCCTCGGACTCGATGGTCGTCTTACGCGTGCCCTAAACAAGAAGAAAATTCACAAGCCCACGCCCATTCAGCTAGTCGCTATTCCTCTCACCTTCAAGGTAAGACATTTGCTTCAGAAGCTGTTCGCTTCGGAATCAAAGAAGAAACTTGCTCCGAGTGCAATCGTTCTCGTCCCTACCCGGGAACTCTCTCAGCAGGTTTATTCAGAGGTTTCATCATTGATTGAATTCTGTAGAGCTCCTTTGAAAGTTGTACAGTTGACAAGCAGCATGCCTGCTCTTGATTGGCGGACAGCTTTAGCGGCACTACCTGAGATTCTGGTTATTACACCAGCTTGCATAAAGAAATGCTTGTCAGATGGTGTTCTTCAACCAGCTTCCATTGATGATTCACTAGAAATTCTCGTTCTCGATGAGGTGAGGGAACTGTTTTTTGCACAGGCGCAGAAACATATTTGTCAGTTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

180

Amino Acids

19.97

Weight (kDa)

5.96

Isoelectric Point (pI)

57.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	61 - 168	5.6e-11	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34910
fragaria_vesca	FvH4_5g29390 FvH4_5g29390
malus_domestica	MD02G1190200.v1.1
prunus_persica	Prupe.6G216200_v2.0.a1
pyrus_communis	pycom02g15430 pycom15g26400
rosa_chinensis	RchiOBHm_Chr7g0222281
rosa_laevigata	RLG00000002079 RLG00000016281
rosa_multiflora	Rmu_sc0013580.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237230
rosa_rugosa	Rorug02G0023300 Rorug02G0023400 Rorug07G0206900
rosa_samantha	Rh7AG348700 Rh7BG338700 Rh7CG366200 Rh7DG345700
rosa_wichuraiana	Rw7G029490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	256
AccII	CGCG	1 cut(s)	97
AciI	CCGC	3 cut(s)	23, 358, 371
AcsI	RAATTY	3 cut(s)	117, 296, 468
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	95
AgsI	TTSAA	5 cut(s)	38, 166, 296, 316, 440
AluBI	AGCT	6 cut(s)	142, 190, 308, 365, 404, 446
AluI	AGCT	6 cut(s)	142, 190, 308, 365, 404, 446
Alw21I	GWGCWC	1 cut(s)	310
AlwNI	CAGNNNCTG	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	336
ApoI	RAATTY	3 cut(s)	117, 296, 468
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	2 cut(s)	250, 251
AsuHPI	GGTGA	3 cut(s)	17, 151, 499
AvaI	CYCGRG	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	2 cut(s)	77, 422
BcnI	CCSGG	2 cut(s)	250, 251
BfaI	CTAG	2 cut(s)	143, 464
BfmI	CTRYAG	2 cut(s)	12, 301
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	3 cut(s)	23, 337, 372
BlsI	GCNGC	3 cut(s)	24, 338, 373
Bme1390I	CCNGG	2 cut(s)	250, 251
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	250, 251
BpiI	GAAGAC	1 cut(s)	51
BpuMI	CCSGG	2 cut(s)	250, 251
BsaJI	CCNNGG	3 cut(s)	27, 73, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
BseDI	CCNNGG	3 cut(s)	27, 73, 249
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	2 cut(s)	275, 372
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	103, 310
Bsp1407I	TGTACA	1 cut(s)	322
BspACI	CCGC	3 cut(s)	23, 358, 371
BspCNI	CTCAG	2 cut(s)	274, 373
BspFNI	CGCG	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	256
BsrGI	TGTACA	1 cut(s)	322
BssECI	CCNNGG	3 cut(s)	27, 73, 249
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	327, 498
Bst6I	CTCTTC	1 cut(s)	45
BstAUI	TGTACA	1 cut(s)	322
BstC8I	GCNNGC	4 cut(s)	99, 341, 345, 406
BstDEI	CTNAG	2 cut(s)	261, 381
BstFNI	CGCG	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	514
BstMWI	GCNNNNNNNGC	4 cut(s)	139, 187, 227, 371
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	2 cut(s)	248, 249
BstSFI	CTRYAG	2 cut(s)	12, 301
BstSLI	GKGCMC	1 cut(s)	103
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	348
BstV2I	GAAGAC	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	4 cut(s)	99, 341, 345, 406
CaiI	CAGNNNCTG	1 cut(s)	190
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	55
Cfr9I	CCCGGG	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	8 cut(s)	22, 127, 142, 190, 308, 365, 404, 446
CviKI_1	RGCY	8 cut(s)	22, 127, 142, 190, 308, 365, 404, 446
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	2 cut(s)	261, 381
DrdI	GACNNNNNNGTC	1 cut(s)	84
DseDI	GACNNNNNNGTC	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	373
Ecl136II	GAGCTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	343
FaiI	YATR	3 cut(s)	341, 410, 522
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	1 cut(s)	339
Fnu4HI	GCNGC	3 cut(s)	23, 337, 372
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	3 cut(s)	23, 337, 372
FspBI	CTAG	2 cut(s)	143, 464
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	3 cut(s)	23, 337, 372
HapII	CCGG	1 cut(s)	250
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	1 cut(s)	343
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	4 cut(s)	78, 203, 385, 458
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	3 cut(s)	17, 151, 499
Hpy166II	GTNNAC	2 cut(s)	8, 330
Hpy188I	TCNGA	6 cut(s)	77, 186, 202, 225, 277, 427
Hpy188III	TCNNGA	2 cut(s)	350, 479
Hpy8I	GTNNAC	2 cut(s)	8, 330
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	2 cut(s)	327, 498
HpyCH4V	TGCA	3 cut(s)	230, 408, 506
HpyF10VI	GCNNNNNNNGC	4 cut(s)	139, 187, 227, 371
HpyF3I	CTNAG	2 cut(s)	261, 381
Hsp92II	CATG	1 cut(s)	343
HspAI	GCGC	1 cut(s)	512
LmnI	GCTCC	2 cut(s)	226, 313
LpnPI	CCDG	9 cut(s)	71, 251, 263, 357, 374, 393, 414, 456, 494
Lsp1109I	GCAGC	1 cut(s)	348
MaeI	CTAG	2 cut(s)	143, 464
MboII	GAAGA	5 cut(s)	56, 62, 124, 223, 428
MhlI	GDGCHC	2 cut(s)	103, 310
MluCI	AATT	4 cut(s)	33, 117, 296, 468
MluI	ACGCGT	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	72
MnlI	CCTC	6 cut(s)	46, 83, 165, 271, 478, 483
MroXI	GAANNNNTTC	1 cut(s)	191
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	2 cut(s)	250, 251
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	4 cut(s)	139, 187, 227, 371
NciI	CCSGG	2 cut(s)	250, 251
NlaIII	CATG	1 cut(s)	343
NspI	RCATGY	1 cut(s)	343
PaeI	GCATGC	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	3 cut(s)	203, 385, 458
PkrI	GCNGC	3 cut(s)	24, 338, 373
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	190
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SacI	GAGCTC	1 cut(s)	310
SatI	GCNGC	3 cut(s)	23, 337, 372
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	2 cut(s)	250, 251
SduI	GDGCHC	2 cut(s)	103, 310
SfcI	CTRYAG	2 cut(s)	12, 301
SinI	GGWCC	1 cut(s)	55
SmaI	CCCGGG	1 cut(s)	251
SphI	GCATGC	1 cut(s)	343
Sse9I	AATT	4 cut(s)	33, 117, 296, 468
SsiI	CCGC	3 cut(s)	23, 358, 371
SspMI	CTAG	2 cut(s)	143, 464
SstI	GAGCTC	1 cut(s)	310
StyD4I	CCNGG	2 cut(s)	248, 249
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	327, 498
TaqI	TCGA	3 cut(s)	66, 81, 480
TasI	AATT	4 cut(s)	33, 117, 296, 468
TatI	WGTACW	1 cut(s)	322
TauI	GCSGC	2 cut(s)	25, 374
TfiI	GAWTC	3 cut(s)	203, 385, 458
TseI	GCWGC	1 cut(s)	336
TspDTI	ATGAA	1 cut(s)	273
TspMI	CCCGGG	1 cut(s)	249
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	3 cut(s)	117, 296, 468
XceI	RCATGY	1 cut(s)	343
XmaI	CCCGGG	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	2 cut(s)	143, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.