pycom15g27370

dof zinc finger protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
22776701 .. 22777855
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1155 bp
ATGATGTCCTCAGATACCGCACCGCCGACGAAGCCAAAACACGACGAGAACCCAACAGGGGGCTCAGGCAGCAGCCGGCCGAAAGCCACGTCGTCATCATCATCGGGGCCAAAGCTGCCACCACCAGAGCAAGCCCTCAACTGCCCGAGATGCGATTCACCCAACACCAAATTCTGCTACTACAACAACTACAGCCTCACGCAGCCACGCCACTTTTGCAAGACTTGCCGGAGATACTGGACCAAAGGCGGCGCCTTACGCAACGTCCCCATCGGCGGCGGCTGCCGGAAGAACAAGAAAATTAGCTCCTCCTCATCTTCCAATTCCAGGCTGTCCTGCAGCTTCGACCCTTCAAAAGACTCGGCCGGCTCTTCCTCCTCAGAGAATATGATGCTCGGCGGCTTGAAGTTCTTCCACGGCATTTCCCCCGCTATGGATTTTCAGCTCGGCAGCATATCTAGGCTCCATAATAGCAACCAGTTCTCTACAAACCTAGCAACTGGGATAAATTTCAACAACCCATTTCCAGCTTTCGGAGACGTTTCGGGTACTTCCGGATTGAGTACTAGTACTCTTGAGCCATCATCCGGCGGTGGGACAAACGCTTGTAATAATTCTTTTCTGGGTTTTAATTATCCGCTCACTTTGGGCGGCCGCGGAGGCAGTGCTAGTGGTAGTGGTGGGTTAATTAGTGCACAGAATATGATGAGTGCAATGAACGTGCACAGTAGCCTTGCGTCTTCAATCGAGTCTTTGAGTTCTATTAACCAAGACCTTCACTGGAAATTGCAGCAGCAGAGGCTTGCCATGTTGTTTGGTACGGAAGAACATGACCAGTCAACTCAGTCTCAGCTTGAAAACCAGCAGAAAACGCAGCAGATGATTGCACCCATAAGCTTGTTTCAGAATCTGGAGGTTTCATCATCCCCAAGACCTGATCATCATCAAGGTGTAAGTCATGGAAGAAAAGAAGGTGGAGATACTGCCACCGAGTGGTTCTTCGGGAACTCTTATGCACCAGCGGTGACTCAGACTCCAACAAACGGCGGTGGTGGCGGCGGCGGCGACGCCAACAATGAGAACGCAAGCAACTGGCCTCATGGAATTCCAGCGTGGAGTAGTCATGATTGGCAGCAGTACAATGCTTGGCCCTAG

Protein Analysis

385

Amino Acids

40.86

Weight (kDa)

8.39

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 44 - 100 2.5e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65590
fragaria_vesca FvH4_1g19310
malus_domestica MD01G1041500.v1.1 MD15G1309400.v1.1
prunus_persica Prupe.6G205200_v2.0.a1
pyrus_communis pycom01g06920 pycom15g27370
rosa_chinensis RchiOBHm_Chr2g0110671
rosa_laevigata RLG00000017829
rosa_multiflora Rmu_sc0000389.1_g000038
rosa_roxburghii Rroxscaffold_2G00133050
rosa_rugosa Rorug02G0168500.1
rosa_samantha Rh2AG220800 Rh2BG230900 Rh2CG223200 Rh2DG227000
rosa_wichuraiana Rw2G017030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 993
AccBSI CCGCTC 1 cut(s) 640
AccII CGCG 1 cut(s) 657
AccIII TCCGGA 1 cut(s) 554
AcoI YGGCCR 3 cut(s) 77, 363, 652
AcsI RAATTY 3 cut(s) 170, 508, 1104
AcyI GRCGYC 2 cut(s) 252, 1068
AdeI CACNNNGTG 1 cut(s) 993
AfaI GTAC 5 cut(s) 550, 565, 571, 820, 1139
AgsI TTSAA 5 cut(s) 354, 406, 514, 744, 857
AhlI ACTAGT 1 cut(s) 566
AjiI CACGTC 1 cut(s) 90
AjnI CCWGG 1 cut(s) 326
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 7 cut(s) 115, 306, 342, 445, 530, 853, 897
AluI AGCT 7 cut(s) 115, 306, 342, 445, 530, 853, 897
Alw21I GWGCWC 2 cut(s) 697, 726
Alw26I GTCTC 2 cut(s) 531, 852
Alw44I GTGCAC 2 cut(s) 693, 722
AlwNI CAGNNNCTG 1 cut(s) 910
Ama87I CYCGRG 1 cut(s) 145
Aor13HI TCCGGA 1 cut(s) 554
AoxI GGCC 6 cut(s) 77, 107, 363, 652, 1094, 1148
ApaLI GTGCAC 2 cut(s) 693, 722
ApoI RAATTY 3 cut(s) 170, 508, 1104
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
Asp700I GAANNNNTTC 1 cut(s) 410
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 3 cut(s) 107, 240, 1149
AsuHPI GGTGA 2 cut(s) 150, 1036
AvaI CYCGRG 1 cut(s) 145
AvaII GGWCC 1 cut(s) 240
BaeGI GKGCMC 2 cut(s) 697, 726
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 732
Bbv12I GWGCWC 2 cut(s) 697, 726
BccI CCATC 2 cut(s) 278, 589
BceAI ACGGC 2 cut(s) 433, 1060
BciT130I CCWGG 1 cut(s) 328
BclI TGATCA 1 cut(s) 937
BcoDI GTCTC 2 cut(s) 531, 852
BcuI ACTAGT 1 cut(s) 566
BfaI CTAG 5 cut(s) 459, 494, 567, 669, 1153
BfmI CTRYAG 2 cut(s) 190, 337
BfoI RGCGCY 1 cut(s) 255
BglI GCCNNNNNGGC 1 cut(s) 660
BmcAI AGTACT 2 cut(s) 565, 571
Bme1390I CCNGG 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 240
BmeT110I CYCGRG 1 cut(s) 145
BmgBI CACGTC 1 cut(s) 90
BmgT120I GGNCC 3 cut(s) 107, 240, 1149
BmiI GGNNCC 3 cut(s) 108, 253, 464
BmrFI CCNGG 1 cut(s) 328
BmrI ACTGGG 1 cut(s) 510
BmsI GCATC 2 cut(s) 140, 381
BmuI ACTGGG 1 cut(s) 510
BpiI GAAGAC 1 cut(s) 732
BpmI CTGGAG 1 cut(s) 932
Bpu10I CCTNAGC 1 cut(s) 64
BpuEI CTTGAG 1 cut(s) 596
BsaBI GATNNNNATC 1 cut(s) 942
BsaHI GRCGYC 2 cut(s) 252, 1068
BsaJI CCNNGG 2 cut(s) 415, 655
BsaWI WCCGGW 1 cut(s) 554
BsaXI ACNNNNNCTCC 2 cut(s) 1018, 1048
Bse118I RCCGGY 2 cut(s) 75, 365
Bse1I ACTGG 6 cut(s) 242, 478, 505, 785, 835, 1097
Bse3DI GCAATG 1 cut(s) 720
Bse8I GATNNNNATC 1 cut(s) 942
BseAI TCCGGA 1 cut(s) 554
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 415, 655
BseGI GGATG 2 cut(s) 584, 923
BseJI GATNNNNATC 1 cut(s) 942
BseMI GCAATG 1 cut(s) 720
BseMII CTCAG 6 cut(s) 24, 78, 393, 857, 863, 1043
BseNI ACTGG 6 cut(s) 242, 478, 505, 785, 835, 1097
BseRI GAGGAG 3 cut(s) 298, 301, 367
BseSI GKGCMC 2 cut(s) 697, 726
BseX3I CGGCCG 3 cut(s) 77, 363, 652
Bsh1236I CGCG 1 cut(s) 657
Bsh1285I CGRYCG 3 cut(s) 80, 366, 655
BshFI GGCC 6 cut(s) 79, 109, 365, 654, 1096, 1150
BshNI GGYRCC 1 cut(s) 251
BsiEI CGRYCG 3 cut(s) 80, 366, 655
BsiHKAI GWGCWC 2 cut(s) 697, 726
BsiHKCI CYCGRG 1 cut(s) 145
BsiSI CCGG 6 cut(s) 76, 229, 286, 366, 555, 588
BslFI GGGAC 2 cut(s) 251, 610
BsmAI GTCTC 2 cut(s) 531, 852
BsmBI CGTCTC 1 cut(s) 531
BsmFI GGGAC 2 cut(s) 251, 610
BsnI GGCC 6 cut(s) 79, 109, 365, 654, 1096, 1150
BsoBI CYCGRG 1 cut(s) 145
Bsp1286I GDGCHC 3 cut(s) 65, 697, 726
Bsp13I TCCGGA 1 cut(s) 554
Bsp143I GATC 1 cut(s) 937
BspANI GGCC 6 cut(s) 79, 109, 365, 654, 1096, 1150
BspCNI CTCAG 6 cut(s) 23, 77, 392, 856, 862, 1042
BspEI TCCGGA 1 cut(s) 554
BspFNI CGCG 1 cut(s) 657
BspHI TCATGA 1 cut(s) 1123
BspLI GGNNCC 3 cut(s) 108, 253, 464
BspMAI CTGCAG 1 cut(s) 341
BspQI GCTCTTC 1 cut(s) 376
BspT107I GGYRCC 1 cut(s) 251
BsrBI CCGCTC 1 cut(s) 640
BsrDI GCAATG 1 cut(s) 720
BsrFI RCCGGY 2 cut(s) 75, 365
BsrI ACTGG 6 cut(s) 242, 478, 505, 785, 835, 1097
BssAI RCCGGY 2 cut(s) 75, 365
BssECI CCNNGG 2 cut(s) 415, 655
BssMI GATC 1 cut(s) 937
BssNI GRCGYC 2 cut(s) 252, 1068
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 728
Bst6I CTCTTC 1 cut(s) 376
BstACI GRCGYC 2 cut(s) 252, 1068
BstAPI GCANNNNNTGC 1 cut(s) 225
BstC8I GCNNGC 5 cut(s) 77, 132, 367, 804, 1087
BstDEI CTNAG 6 cut(s) 10, 64, 379, 843, 849, 1029
BstDSI CCRYGG 2 cut(s) 415, 655
BstF5I GGATG 2 cut(s) 584, 923
BstFNI CGCG 1 cut(s) 657
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 1 cut(s) 940
BstMAI GTCTC 2 cut(s) 531, 852
BstMBI GATC 1 cut(s) 937
BstMCI CGRYCG 3 cut(s) 80, 366, 655
BstNI CCWGG 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 326
BstSFI CTRYAG 2 cut(s) 190, 337
BstSLI GKGCMC 2 cut(s) 697, 726
BstUI CGCG 1 cut(s) 657
BstV2I GAAGAC 1 cut(s) 732
BstZI CGGCCG 3 cut(s) 77, 363, 652
BsuRI GGCC 6 cut(s) 79, 109, 365, 654, 1096, 1150
BtgI CCRYGG 2 cut(s) 415, 655
BtrI CACGTC 1 cut(s) 90
BtsCI GGATG 2 cut(s) 584, 923
BtsI GCAGTG 1 cut(s) 670
BtsIMutI CAGTG 2 cut(s) 670, 778
Cac8I GCNNGC 5 cut(s) 77, 132, 367, 804, 1087
CaiI CAGNNNCTG 1 cut(s) 910
CciI TCATGA 1 cut(s) 1123
CciNI GCGGCCGC 1 cut(s) 652
CfoI GCGC 1 cut(s) 254
Cfr10I RCCGGY 2 cut(s) 75, 365
Cfr13I GGNCC 3 cut(s) 107, 240, 1149
Cfr42I CCGCGG 1 cut(s) 658
CseI GACGC 2 cut(s) 726, 1076
Csp6I GTAC 5 cut(s) 549, 564, 570, 819, 1138
CviAII CATG 5 cut(s) 808, 830, 959, 1100, 1124
CviQI GTAC 5 cut(s) 549, 564, 570, 819, 1138
DdeI CTNAG 6 cut(s) 10, 64, 379, 843, 849, 1029
DinI GGCGCC 1 cut(s) 253
DpnI GATC 1 cut(s) 939
DpnII GATC 1 cut(s) 937
DraIII CACNNNGTG 1 cut(s) 993
EaeI YGGCCR 3 cut(s) 77, 363, 652
EagI CGGCCG 3 cut(s) 77, 363, 652
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
EclXI CGGCCG 3 cut(s) 77, 363, 652
Eco24I GRGCYC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 240
Eco52I CGGCCG 3 cut(s) 77, 363, 652
Eco88I CYCGRG 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 1104
EcoRII CCWGG 1 cut(s) 326
EcoT38I GRGCYC 1 cut(s) 65
EgeI GGCGCC 1 cut(s) 253
EheI GGCGCC 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 531
FaeI CATG 5 cut(s) 811, 833, 962, 1103, 1127
FaqI GGGAC 2 cut(s) 251, 610
FatI CATG 5 cut(s) 807, 829, 958, 1099, 1123
FauI CCCGC 1 cut(s) 436
FbaI TGATCA 1 cut(s) 937
FokI GGATG 2 cut(s) 571, 910
FriOI GRGCYC 1 cut(s) 65
FspBI CTAG 5 cut(s) 459, 494, 567, 669, 1153
GlaI GCGC 1 cut(s) 253
GsuI CTGGAG 1 cut(s) 932
HaeII RGCGCY 1 cut(s) 255
HaeIII GGCC 6 cut(s) 79, 109, 365, 654, 1096, 1150
HapII CCGG 6 cut(s) 76, 229, 286, 366, 555, 588
HgaI GACGC 2 cut(s) 726, 1076
HhaI GCGC 1 cut(s) 254
Hin1I GRCGYC 2 cut(s) 252, 1068
Hin1II CATG 5 cut(s) 811, 833, 962, 1103, 1127
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HincII GTYRAC 1 cut(s) 840
HindII GTYRAC 1 cut(s) 840
HindIII AAGCTT 1 cut(s) 895
HinfI GANTC 6 cut(s) 155, 359, 749, 907, 1027, 1033
HpaII CCGG 6 cut(s) 76, 229, 286, 366, 555, 588
HphI GGTGA 2 cut(s) 150, 1036
Hpy166II GTNNAC 3 cut(s) 695, 724, 840
Hpy188I TCNGA 5 cut(s) 13, 382, 536, 906, 1032
Hpy188III TCNNGA 5 cut(s) 555, 575, 911, 1003, 1124
Hpy8I GTNNAC 3 cut(s) 695, 724, 840
Hpy99I CGWCG 4 cut(s) 31, 47, 94, 1070
HpyAV CCTTC 3 cut(s) 360, 785, 965
HpyCH4III ACNGT 1 cut(s) 728
HpyCH4IV ACGT 4 cut(s) 89, 264, 540, 720
HpyCH4V TGCA 8 cut(s) 219, 339, 695, 713, 724, 790, 887, 1016
HpyF3I CTNAG 6 cut(s) 10, 64, 379, 843, 849, 1029
HpySE526I ACGT 4 cut(s) 89, 264, 540, 720
Hsp92I GRCGYC 2 cut(s) 252, 1068
Hsp92II CATG 5 cut(s) 811, 833, 962, 1103, 1127
HspAI GCGC 1 cut(s) 252
KasI GGCGCC 1 cut(s) 251
Kpn2I TCCGGA 1 cut(s) 554
KroI GCCGGC 2 cut(s) 75, 365
KroNI GCCGGC 2 cut(s) 77, 367
Ksp22I TGATCA 1 cut(s) 937
KspI CCGCGG 1 cut(s) 658
Kzo9I GATC 1 cut(s) 937
LguI GCTCTTC 1 cut(s) 376
LmnI GCTCC 2 cut(s) 311, 468
LweI GCATC 2 cut(s) 140, 381
MaeI CTAG 5 cut(s) 459, 494, 567, 669, 1153
MaeII ACGT 4 cut(s) 89, 264, 540, 720
MaeIII GTNAC 1 cut(s) 1024
MalI GATC 1 cut(s) 939
MbiI CCGCTC 1 cut(s) 640
MboI GATC 1 cut(s) 937
MboII GAAGA 8 cut(s) 301, 309, 363, 403, 732, 836, 975, 991
MhlI GDGCHC 3 cut(s) 65, 697, 726
MluCI AATT 9 cut(s) 170, 300, 322, 508, 613, 631, 687, 785, 1104
Mly113I GGCGCC 1 cut(s) 252
MlyI GAGTC 4 cut(s) 353, 758, 1021, 1027
MmeI TCCRAC 1 cut(s) 1061
MroI TCCGGA 1 cut(s) 554
MroNI GCCGGC 2 cut(s) 75, 365
MroXI GAANNNNTTC 1 cut(s) 410
MseI TTAA 3 cut(s) 630, 686, 765
MslI CAYNNNNRTG 1 cut(s) 948
MspA1I CMGCKG 2 cut(s) 657, 1022
MspI CCGG 6 cut(s) 76, 229, 286, 366, 555, 588
MspR9I CCNGG 1 cut(s) 328
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 1 cut(s) 657
NaeI GCCGGC 2 cut(s) 77, 367
NarI GGCGCC 1 cut(s) 252
NdeII GATC 1 cut(s) 937
NgoMIV GCCGGC 2 cut(s) 75, 365
NlaIII CATG 5 cut(s) 811, 833, 962, 1103, 1127
NlaIV GGNNCC 3 cut(s) 108, 253, 464
NmeAIII GCCGAG 3 cut(s) 341, 375, 426
NmuCI GTSAC 1 cut(s) 1024
NotI GCGGCCGC 1 cut(s) 652
PagI TCATGA 1 cut(s) 1123
PciSI GCTCTTC 1 cut(s) 376
PdiI GCCGGC 2 cut(s) 77, 367
PdmI GAANNNNTTC 1 cut(s) 410
PfeI GAWTC 2 cut(s) 155, 907
PflMI CCANNNNNTGG 1 cut(s) 993
PleI GAGTC 4 cut(s) 353, 757, 1021, 1027
PluTI GGCGCC 1 cut(s) 255
PpsI GAGTC 4 cut(s) 353, 757, 1021, 1027
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 3 cut(s) 108, 253, 464
PspPI GGNCC 3 cut(s) 107, 240, 1149
PstI CTGCAG 1 cut(s) 341
PstNI CAGNNNCTG 1 cut(s) 910
RsaI GTAC 5 cut(s) 550, 565, 571, 820, 1139
RsaNI GTAC 5 cut(s) 549, 564, 570, 819, 1138
RseI CAYNNNNRTG 1 cut(s) 948
SacII CCGCGG 1 cut(s) 658
SapI GCTCTTC 1 cut(s) 376
SaqAI TTAA 3 cut(s) 630, 686, 765
Sau3AI GATC 1 cut(s) 937
Sau96I GGNCC 3 cut(s) 107, 240, 1149
ScaI AGTACT 2 cut(s) 565, 571
SchI GAGTC 4 cut(s) 353, 758, 1021, 1027
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 3 cut(s) 65, 697, 726
SfaNI GCATC 2 cut(s) 140, 381
SfcI CTRYAG 2 cut(s) 190, 337
SfoI GGCGCC 1 cut(s) 253
Sfr303I CCGCGG 1 cut(s) 658
SgrBI CCGCGG 1 cut(s) 658
SinI GGWCC 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 948
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
SpeI ACTAGT 1 cut(s) 566
Sse9I AATT 9 cut(s) 170, 300, 322, 508, 613, 631, 687, 785, 1104
SspDI GGCGCC 1 cut(s) 251
SspMI CTAG 5 cut(s) 459, 494, 567, 669, 1153
StyD4I CCNGG 1 cut(s) 326
TaaI ACNGT 1 cut(s) 728
TaiI ACGT 4 cut(s) 92, 267, 543, 723
TaqI TCGA 2 cut(s) 345, 747
TasI AATT 9 cut(s) 170, 300, 322, 508, 613, 631, 687, 785, 1104
TatI WGTACW 3 cut(s) 563, 569, 1137
TauI GCSGC 9 cut(s) 252, 279, 282, 402, 654, 657, 1059, 1062, 1065
TfiI GAWTC 2 cut(s) 155, 907
Tru1I TTAA 3 cut(s) 630, 686, 765
Tru9I TTAA 3 cut(s) 630, 686, 765
TscAI CASTG 2 cut(s) 670, 785
TseFI GTSAC 1 cut(s) 1024
Tsp45I GTSAC 1 cut(s) 1024
TspDTI ATGAA 2 cut(s) 731, 909
TspGWI ACGGA 1 cut(s) 836
TspRI CASTG 2 cut(s) 670, 785
Van91I CCANNNNNTGG 1 cut(s) 993
VneI GTGCAC 2 cut(s) 693, 722
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 3 cut(s) 170, 508, 1104
XmnI GAANNNNTTC 1 cut(s) 410
XspI CTAG 5 cut(s) 459, 494, 567, 669, 1153
ZrmI AGTACT 2 cut(s) 565, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.