Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015611

Physical Location & Seq

Genomic Coordinates Forward (+)

24028450 .. 24029076

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g28260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAAGAGCTTCGCCTTCCCCACTGCACCATGTTGCCGAACCAGAGCATGACCGGAGCTAATTTCACCCTCCTCTCCAACAATGACAAGTTCAGCGTCGTCAACGTGAGTAATTTATTCTTCAACGACACTGACGTCTATCAGAGTTTCAGCAACGCTTTCCAGTCTCTGGACTCCGAAGGCAAAGTGCAGCAAGCAAACAGCGAACTGATGATTGACGACTACGGGAATTTCAGAATTTACAGCTTCAATCTCAGTCTGCGGCAATGGAACATCGTTTGGCAAGCCAGGTACAAATTGTGCAAAGTCCACTGCACGTGCGGGCTGAGCGCCATCTGCGTCAACGACGGTTTGAGCTCCTCTTACTGCATGTGCCCGTCAGGATTTAGAGAATCCGCCGACGGAATTAAAGAAAGAGGGTGCGAAAGGAAAATTAAGCTCACGACTTTAGGGAACACGGGCGGGTCTAACCAGATAAATTGGCCTGCCGTCAATTTCAACGTCTGCGAATCGAGATGCATGGCGAGAAACGATTGCCTCAGATTCATGTTCACATACGACGGAAAAGGCTACTGCATGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

195

Amino Acids

21.97

Weight (kDa)

6.69

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	62 - 131	3.6e-08	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33230
malus_domestica	MD16G1015600.v1.1
prunus_persica	Prupe.1G336000_v2.0.a1
pyrus_communis	pycom15g28260 pycom16g01450
rosa_chinensis	RchiOBHm_Chr4g0442381
rosa_laevigata	RLG00000006014
rosa_multiflora	Rmu_co8314767.1_g000001 Rmu_co8434117.1_g000001 Rmu_sc0000124.1_g000043
rosa_roxburghii	Rroxscaffold_5G00383230
rosa_rugosa	Rorug04G0340700
rosa_samantha	Rh4AG392300 Rh4BG406000 Rh4CG421100 Rh4DG399100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AatII	GACGTC	1 cut(s)	138
AccB7I	CCANNNNNTGG	1 cut(s)	169
AciI	CCGC	4 cut(s)	262, 321, 396, 462
AcsI	RAATTY	2 cut(s)	229, 237
AcvI	CACGTG	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	3 cut(s)	124, 250, 499
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	5 cut(s)	10, 59, 246, 357, 439
AluI	AGCT	5 cut(s)	10, 59, 246, 357, 439
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	1 cut(s)	171
AlwNI	CAGNNNCTG	1 cut(s)	169
AoxI	GGCC	1 cut(s)	482
ApeKI	GCWGC	1 cut(s)	190
ApoI	RAATTY	2 cut(s)	229, 237
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	359
BbrPI	CACGTG	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	1 cut(s)	341
BceAI	ACGGC	1 cut(s)	473
BciT130I	CCWGG	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	583
BfoI	RGCGCY	1 cut(s)	333
BisI	GCNGC	2 cut(s)	191, 263
BlpI	GCTNAGC	1 cut(s)	326
BlsI	GCNGC	2 cut(s)	192, 264
Bme1390I	CCNGG	1 cut(s)	289
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	1 cut(s)	506
Bpu1102I	GCTNAGC	1 cut(s)	326
BsaAI	YACGTR	1 cut(s)	318
BsaHI	GRCGYC	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	163
Bse3DI	GCAATG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	272
BseMII	CTCAG	3 cut(s)	268, 317, 553
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	2 cut(s)	62, 349
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	202
BsgI	GTGCAG	3 cut(s)	10, 209, 298
BshFI	GGCC	1 cut(s)	484
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	484
Bsp1286I	GDGCHC	2 cut(s)	359, 377
Bsp1720I	GCTNAGC	1 cut(s)	326
BspACI	CCGC	4 cut(s)	262, 321, 396, 462
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	3 cut(s)	267, 318, 552
BsrDI	GCAATG	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	163
BssNI	GRCGYC	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	350
BstACI	GRCGYC	1 cut(s)	135
BstBAI	YACGTR	1 cut(s)	318
BstC8I	GCNNGC	4 cut(s)	195, 285, 323, 486
BstDEI	CTNAG	3 cut(s)	254, 326, 539
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstMAI	GTCTC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	2 cut(s)	327, 336
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	287
BstSLI	GKGCMC	1 cut(s)	377
BstV1I	GCAGC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	484
BtsI	GCAGTG	2 cut(s)	22, 310
BtsIMutI	CAGTG	3 cut(s)	22, 129, 310
Cac8I	GCNNGC	4 cut(s)	195, 285, 323, 486
CaiI	CAGNNNCTG	1 cut(s)	169
CfoI	GCGC	1 cut(s)	332
CseI	GACGC	2 cut(s)	85, 328
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	6 cut(s)	31, 49, 370, 520, 547, 577
CviJI	RGCY	9 cut(s)	10, 59, 246, 287, 325, 357, 439, 484, 570
CviKI_1	RGCY	9 cut(s)	10, 59, 246, 287, 325, 357, 439, 484, 570
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	3 cut(s)	254, 326, 539
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
EciI	GGCGGA	1 cut(s)	385
Ecl136II	GAGCTC	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	359
Eco53kI	GAGCTC	1 cut(s)	357
Eco72I	CACGTG	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	287
EcoT22I	ATGCAT	1 cut(s)	521
EcoT38I	GRGCYC	1 cut(s)	359
FaeI	CATG	6 cut(s)	34, 52, 373, 523, 550, 580
FaiI	YATR	7 cut(s)	32, 50, 371, 521, 548, 556, 578
FatI	CATG	6 cut(s)	30, 48, 369, 519, 546, 576
FauI	CCCGC	2 cut(s)	314, 455
Fnu4HI	GCNGC	2 cut(s)	191, 263
FriOI	GRGCYC	1 cut(s)	359
Fsp4HI	GCNGC	2 cut(s)	191, 263
FspBI	CTAG	1 cut(s)	583
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	2 cut(s)	191, 263
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	484
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	2 cut(s)	85, 328
HhaI	GCGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	6 cut(s)	34, 52, 373, 523, 550, 580
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HincII	GTYRAC	2 cut(s)	103, 343
HindII	GTYRAC	2 cut(s)	103, 343
HinfI	GANTC	4 cut(s)	173, 392, 509, 543
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	4 cut(s)	103, 310, 343, 552
Hpy188I	TCNGA	4 cut(s)	144, 178, 236, 542
Hpy188III	TCNNGA	4 cut(s)	170, 381, 442, 513
Hpy8I	GTNNAC	4 cut(s)	103, 310, 343, 552
Hpy99I	CGWCG	4 cut(s)	101, 350, 404, 563
HpyAV	CCTTC	2 cut(s)	26, 173
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	4 cut(s)	105, 135, 317, 501
HpyCH4V	TGCA	7 cut(s)	27, 190, 303, 315, 369, 519, 576
HpyF10VI	GCNNNNNNNGC	2 cut(s)	327, 336
HpyF3I	CTNAG	3 cut(s)	254, 326, 539
HpySE526I	ACGT	4 cut(s)	105, 135, 317, 501
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	6 cut(s)	34, 52, 373, 523, 550, 580
HspAI	GCGC	1 cut(s)	330
LmnI	GCTCC	2 cut(s)	56, 362
LpnPI	CCDG	9 cut(s)	56, 67, 155, 176, 274, 301, 366, 485, 498
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	1 cut(s)	506
MaeI	CTAG	1 cut(s)	583
MaeII	ACGT	4 cut(s)	105, 135, 317, 501
MboII	GAAGA	2 cut(s)	17, 112
MhlI	GDGCHC	2 cut(s)	359, 377
MluCI	AATT	9 cut(s)	61, 112, 229, 237, 296, 405, 432, 478, 493
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	5 cut(s)	80, 83, 370, 410, 548
Mph1103I	ATGCAT	1 cut(s)	521
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	2 cut(s)	408, 435
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	2 cut(s)	327, 336
NlaIII	CATG	6 cut(s)	34, 52, 373, 523, 550, 580
NsiI	ATGCAT	1 cut(s)	521
NspI	RCATGY	1 cut(s)	373
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	3 cut(s)	392, 509, 543
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	192, 264
PleI	GAGTC	1 cut(s)	167
PmaCI	CACGTG	1 cut(s)	318
PmlI	CACGTG	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	287
PspCI	CACGTG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	287
PstNI	CAGNNNCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SacI	GAGCTC	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	408, 435
SatI	GCNGC	2 cut(s)	191, 263
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	2 cut(s)	359, 377
SfaNI	GCATC	1 cut(s)	506
Sse9I	AATT	9 cut(s)	61, 112, 229, 237, 296, 405, 432, 478, 493
SsiI	CCGC	4 cut(s)	262, 321, 396, 462
SspMI	CTAG	1 cut(s)	583
SstI	GAGCTC	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	4 cut(s)	108, 138, 320, 504
TaqI	TCGA	1 cut(s)	512
TasI	AATT	9 cut(s)	61, 112, 229, 237, 296, 405, 432, 478, 493
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	3 cut(s)	392, 509, 543
Tru1I	TTAA	2 cut(s)	408, 435
Tru9I	TTAA	2 cut(s)	408, 435
TscAI	CASTG	3 cut(s)	29, 136, 317
TseI	GCWGC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	535
TspGWI	ACGGA	2 cut(s)	417, 576
TspRI	CASTG	3 cut(s)	29, 136, 317
Van91I	CCANNNNNTGG	1 cut(s)	169
XapI	RAATTY	2 cut(s)	229, 237
XceI	RCATGY	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	583
ZraI	GACGTC	1 cut(s)	136
Zsp2I	ATGCAT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.