Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0015611

Physical Location & Seq

Genomic Coordinates Forward (+)

51362328 .. 51362867

Gene Structure 540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0340700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAGAAGTATAATATCTGTAGCAGTTCTCATATACCAAATTTCATTTCTTCCATTAACTCAGTGCAGGGTTTACCTACCAACGGATGCCAATCTCATTGGCCAGACATGCCTTCAAACCGCGAAACCCGATCTTTGTGTCTCTTCTCTTGAATCGGTCCCTGAGAGCTCCGATGCAGACATCAAAGGCTTAGCTCTCATAATGTCCGACAATGTACTCAAGGGCAAAGCACAGGATGCTCTGAAAGAAATCAACGAGCTGATTAAGCAGACACCTATATCGAGTAACAAAGCCTTACTTGCATGCGCAGACTACTATGGCACGATCATAGAATTTCATATCGAAAAACAAGCGCATGATGGAATTACTGGGAATCAGCCTAGGAAAGCTGCACAGCTAGCCATGGATGATACCGTCTATTTGGTCAATGAATGTAACAATGGTTTGGGTTTTTCACCTAGCTCTCCTCTAACAGTTATGAGCGCAAGTGTGGCTGATATTGCGACCATTACTAAAGCAATAGTGCAGATATTGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

179

Amino Acids

19.2

Weight (kDa)

4.91

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	31 - 149	2.2e-12	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33230
malus_domestica	MD16G1015600.v1.1
prunus_persica	Prupe.1G336000_v2.0.a1
pyrus_communis	pycom15g28260 pycom16g01450
rosa_chinensis	RchiOBHm_Chr4g0442381
rosa_laevigata	RLG00000006014
rosa_multiflora	Rmu_co8314767.1_g000001 Rmu_co8434117.1_g000001 Rmu_sc0000124.1_g000043
rosa_roxburghii	Rroxscaffold_5G00383230
rosa_rugosa	Rorug04G0340700
rosa_samantha	Rh4AG392300 Rh4BG406000 Rh4CG421100 Rh4DG399100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	307
AccII	CGCG	1 cut(s)	122
AciI	CCGC	1 cut(s)	120
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	2 cut(s)	39, 332
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	116, 152
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AluBI	AGCT	6 cut(s)	168, 194, 259, 389, 397, 462
AluI	AGCT	6 cut(s)	168, 194, 259, 389, 397, 462
Alw21I	GWGCWC	1 cut(s)	170
Alw26I	GTCTC	1 cut(s)	145
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	2 cut(s)	39, 332
AspA2I	CCTAGG	1 cut(s)	380
AspLEI	GCGC	3 cut(s)	308, 355, 485
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	447
AsuNHI	GCTAGC	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	157
AvrII	CCTAGG	1 cut(s)	380
BalI	TGGCCA	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	3 cut(s)	381, 398, 459
BfmI	CTRYAG	1 cut(s)	18
BisI	GCNGC	1 cut(s)	390
BlnI	CCTAGG	1 cut(s)	380
BlpI	GCTNAGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	391
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	3 cut(s)	76, 163, 226
BmtI	GCTAGC	1 cut(s)	401
BmuI	ACTGGG	1 cut(s)	378
Bpu1102I	GCTNAGC	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	203
BsaBI	GATNNNNATC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	380, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	373
Bse8I	GATNNNNATC	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	380, 402
BseGI	GGATG	3 cut(s)	91, 241, 412
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	74, 153
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	1 cut(s)	376
BsgI	GTGCAG	2 cut(s)	85, 375
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	2 cut(s)	130, 324
Bsp1720I	GCTNAGC	1 cut(s)	190
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	2 cut(s)	73, 154
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	159
BspOI	GCTAGC	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	2 cut(s)	380, 402
BssMI	GATC	2 cut(s)	130, 324
BssT1I	CCWWGG	2 cut(s)	380, 402
Bst4CI	ACNGT	2 cut(s)	415, 475
Bst6I	CTCTTC	1 cut(s)	148
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	304, 399
BstDEI	CTNAG	3 cut(s)	60, 162, 190
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	3 cut(s)	91, 241, 412
BstFNI	CGCG	1 cut(s)	122
BstHHI	GCGC	3 cut(s)	308, 355, 485
BstKTI	GATC	2 cut(s)	133, 327
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	2 cut(s)	130, 324
BstMWI	GCNNNNNNNGC	7 cut(s)	108, 236, 265, 299, 398, 491, 500
BstNSI	RCATGY	2 cut(s)	111, 306
BstSFI	CTRYAG	1 cut(s)	18
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	3 cut(s)	91, 241, 412
BtsIMutI	CAGTG	1 cut(s)	68
Cac8I	GCNNGC	2 cut(s)	304, 399
CfoI	GCGC	3 cut(s)	308, 355, 485
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	4 cut(s)	108, 303, 356, 403
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	3 cut(s)	60, 162, 190
DpnI	GATC	2 cut(s)	132, 326
DpnII	GATC	2 cut(s)	130, 324
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Ecl136II	GAGCTC	1 cut(s)	168
Eco130I	CCWWGG	2 cut(s)	380, 402
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	168
EcoT14I	CCWWGG	2 cut(s)	380, 402
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	2 cut(s)	380, 402
FaeI	CATG	4 cut(s)	111, 306, 359, 406
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	4 cut(s)	107, 302, 355, 402
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	3 cut(s)	98, 248, 419
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	3 cut(s)	381, 398, 459
FspI	TGCGCA	1 cut(s)	307
GlaI	GCGC	3 cut(s)	307, 354, 484
GluI	GCNGC	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	102
HhaI	GCGC	3 cut(s)	308, 355, 485
Hin1II	CATG	4 cut(s)	111, 306, 359, 406
Hin6I	GCGC	3 cut(s)	306, 353, 483
HinP1I	GCGC	3 cut(s)	306, 353, 483
HinfI	GANTC	2 cut(s)	152, 373
HphI	GGTGA	1 cut(s)	447
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	172, 208, 243
Hpy188III	TCNNGA	2 cut(s)	149, 537
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	2 cut(s)	415, 475
HpyCH4V	TGCA	5 cut(s)	66, 176, 302, 392, 526
HpyF10VI	GCNNNNNNNGC	7 cut(s)	108, 236, 265, 299, 398, 491, 500
HpyF3I	CTNAG	3 cut(s)	60, 162, 190
Hsp92II	CATG	4 cut(s)	111, 306, 359, 406
HspAI	GCGC	3 cut(s)	306, 353, 483
Kzo9I	GATC	2 cut(s)	130, 324
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	5 cut(s)	52, 116, 174, 218, 354
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	3 cut(s)	76, 163, 226
MaeI	CTAG	3 cut(s)	381, 398, 459
MaeIII	GTNAC	2 cut(s)	284, 434
MalI	GATC	2 cut(s)	132, 326
MboI	GATC	2 cut(s)	130, 324
MboII	GAAGA	2 cut(s)	41, 135
MhlI	GDGCHC	1 cut(s)	170
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	3 cut(s)	39, 332, 363
MluNI	TGGCCA	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	1 cut(s)	477
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	2 cut(s)	56, 264
Msp20I	TGGCCA	1 cut(s)	102
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	7 cut(s)	108, 236, 265, 299, 398, 491, 500
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	2 cut(s)	130, 324
NheI	GCTAGC	1 cut(s)	397
NlaIII	CATG	4 cut(s)	111, 306, 359, 406
NlaIV	GGNNCC	1 cut(s)	159
NsbI	TGCGCA	1 cut(s)	307
NspI	RCATGY	2 cut(s)	111, 306
PaeI	GCATGC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	152, 373
PkrI	GCNGC	1 cut(s)	391
Psp124BI	GAGCTC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	157
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	56, 264
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	2 cut(s)	130, 324
Sau96I	GGNCC	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	9 cut(s)	78, 170, 196, 261, 277, 391, 399, 460, 464
SfaNI	GCATC	3 cut(s)	76, 163, 226
SfcI	CTRYAG	1 cut(s)	18
SinI	GGWCC	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
SphI	GCATGC	1 cut(s)	306
Sse9I	AATT	3 cut(s)	39, 332, 363
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	3 cut(s)	381, 398, 459
SstI	GAGCTC	1 cut(s)	170
StyI	CCWWGG	2 cut(s)	380, 402
TaaI	ACNGT	2 cut(s)	415, 475
TaqI	TCGA	2 cut(s)	281, 342
TaqII	GACCGA	1 cut(s)	145
TasI	AATT	3 cut(s)	39, 332, 363
TatI	WGTACW	1 cut(s)	214
TfiI	GAWTC	2 cut(s)	152, 373
Tru1I	TTAA	2 cut(s)	56, 264
Tru9I	TTAA	2 cut(s)	56, 264
TscAI	CASTG	1 cut(s)	68
TseI	GCWGC	1 cut(s)	389
TspDTI	ATGAA	3 cut(s)	33, 326, 444
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	2 cut(s)	39, 332
XceI	RCATGY	2 cut(s)	111, 306
XmaJI	CCTAGG	1 cut(s)	380
XspI	CTAG	3 cut(s)	381, 398, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.