Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0015611

Physical Location & Seq

Genomic Coordinates Forward (+)

61542443 .. 61545958

Gene Structure 3516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG399100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2376 bp

ATGTCTACCTTCTTCCTCTTCCTCCTCCTCTTCATCTTCACCATCTCAAACCCGCCACCCTCCTTCGCCGAACAAACCCTCTCCTTCTCCGTCTCCAACTCTCCATGGACCCCACAAAGCAATCTCACCCTCCTCTCCCCCAACTCCCACTTCGCCGCCGGCTTCCGCCCCCTCCCTTCTTCCCCAAACCTCTTCAACTTCTCCATCTGGTTCCGCAGCACCTCCGCCCCAAACGTTGTCTGGTCCACCAACCCCCCGCTGGGCCCCTCCGCTACTCTCTCCATCACCTCCACCGGAGCCCTCCACCTCTCCAACTCTTCCTCCGGTCAAAACCTCTTGCCAGGAAACACCTCCGCCGCTCGAAACACCACCCAACTCAAGCTCCGAAACGACGGTAACTTATTCTACGGTGCTTGGGACAGCTTCGCCTTCCCGACCGACACCGTATTACCAAACCAATCCATGGAAGGAAACATCACGCTCGTCTCCAAAAACGGCAAGTTCCGGTTCACCAACTCGACCAAGCTCGTCTTCAACCTCACCGAACAGTACCAGGACCTGACCGACGCCTTCAAGAACCTCGACTTCGACGGCAAGATGACGCAGGCAAACGGCAAGTCGTTCATCGTCTCCGACTTCGGGCTCAACCGCTCACGCAGACTCACCCTCGACAACGACGGCAACCTCCGCATTTACAGCTTCGATCCGAGTATCGCGGACTGGACAGTTGTCTGGCAATCCGGCTACGAGCTCTGTCAGGTGCACGGCACGTGCGGACCCAACGCCATTTGCGTCAGCGACGGTACTAGCTCTAGTTATGACTGCGTCTGCCCGCCTGGGTTTCAACCAGCACCGGGAGCCATTGAAGACCAAGGATGTCAGAGGAAAATCCCTCTTTCCAAAAATACCAAATTTCTAAAGCTTGATTACGTCAACTTTACCGGCGGGTCAAACCAGACGAATTGGCCCGCAACTAACTTCAGCATATGCGAGTCAAGATGTCTGAGAAGAGCTAACTGTGAGGGATTCATGTTCAAATACGACGGCAAAGGCTACTGTGTGCTGCAGCTGGATCGGTTGCTGTACGGGTACTGGTCGCCGGGAACCGAAACCGCTATGTTTCTCCGGGTGGACGGAGCCGAAAAGGATCAGACCAATTTCACAGGCATGACGGAGCTGCTGGAGACGACGTGTCCGGTGCAGATTAGCCTCCCTCTGCCGCCGCAAGAGTCGAACGCTACCACCAGGAACATAATTATTATATGCACTCTGTTTGCTGCTGAGTTGATTTCTGGGGTGCTGTTCTTCTGGGCTTTTATCAAGAAGTACATAAAGTACAGAGACATGGCTCGGACGCTTGGGCTTGAGTTTCTTCCGGCCGGCGGGCCCAAGCGGTTTTCGTACGCCGAGCTGAAAGCAGCCACCAAAGACTTCTCGAATCTGATCGGGAAAGGTGGGTTTGGGGATGTTTACAAAGGAGAGCTGACGGATCAGAGGGTGGTGGCGGTCAAGTGTTTGAAACACGTGGCCGGCGGCGACGCCGAGTTTTGGGCGGAGGTGACAATCATTGCACGGATGCACCACCTCAATTTGGTCAGGTTGTGGGGCTTCTGCGCGGAGAAAGGTCAGAGAATACTAGTCTATGAGTATGTTCCTAATGGGTCCCTAGACAAGTACCTTTTCCAACCGGGTCGGGTTTTGTCAACGGATCAGGACTCGGAAAATGTAGCCCCGGTGGCAGATGCAGAGAAACCGATTCTTGATTGGGGAATAAGGTACCGAATTGCGCTGGGCGTGGCGAGATCAATTGCTTATTTGCACGAGGAGTGTCTCGAATGGGTTTTGCATTGTGATATTAAGCCGGAAAATATACTTCTCGGCGACGACTTTTGCCCGAAAATATCGGACTTCGGGTTGGCCAAGCTGAAGAAGAAGGAGGACATGGTGAGCATATCGCGGATGCAGGGGACCCGCGGGTACATGGCGCCCGAGTGGGTCAAGATGGACCCGATCACGCCCAAGGCTGACGTGTACAGCTTCGGAATGGTGTTGTTGGAGCTTGTGAGTGGGGTCCGGAATAACGAGATTCAAGGGTCGATGATAGAGAGCGAGGATTGGTATTTTCCGAGGTGGGCGTTTGATAAGGTGTTTAAGGAGATGAACGTGGAGGACATTCTTGACCGCCGGATCATGCATTGCTACGATAGCAGGGCGCATTTTGATACGGTGAACCGAATGGTGAAGACGGCGATGTGGTGCCTTCAGGACCGGCCGGAGATGAGGCCGTCGATGGGGAAGGTGGCTAAGATGTTGGAAGGGACGGTGGATATCACGGAACCTAAAAAGCCCACTATATTTTTCCTTACCGACGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

791

Amino Acids

88.75

Weight (kDa)

6.15

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	85 - 159	1.7e-06	D-mannose binding lectin
S_locus_glycop	PF00954	200 - 283	1.9e-10	S-locus glycoprotein domain
PK_Tyr_Ser-Thr	PF07714	479 - 770	1.7e-41	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	480 - 767	1.8e-42	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33230
malus_domestica	MD16G1015600.v1.1
prunus_persica	Prupe.1G336000_v2.0.a1
pyrus_communis	pycom15g28260 pycom16g01450
rosa_chinensis	RchiOBHm_Chr4g0442381
rosa_laevigata	RLG00000006014
rosa_multiflora	Rmu_co8314767.1_g000001 Rmu_co8434117.1_g000001 Rmu_sc0000124.1_g000043
rosa_roxburghii	Rroxscaffold_5G00383230
rosa_rugosa	Rorug04G0340700
rosa_samantha	Rh4AG392300 Rh4BG406000 Rh4CG421100 Rh4DG399100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1776
AccB1I	GGYRCC	3 cut(s)	1776, 1984, 2256
AccB7I	CCANNNNNTGG	1 cut(s)	463
AccBSI	CCGCTC	2 cut(s)	359, 651
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	4 cut(s)	716, 1616, 1957, 1974
AccIII	TCCGGA	1 cut(s)	2073
AclI	AACGTT	1 cut(s)	234
AclWI	GGATC	6 cut(s)	698, 1080, 1155, 1497, 1716, 2195
AcoI	YGGCCR	4 cut(s)	1377, 1527, 1917, 2270
AcsI	RAATTY	1 cut(s)	911
AcuI	CTGAAG	3 cut(s)	964, 1946, 2246
AcvI	CACGTG	2 cut(s)	771, 1525
AcyI	GRCGYC	3 cut(s)	567, 1539, 1985
AfiI	CCNNNNNNNGG	9 cut(s)	259, 260, 463, 639, 854, 1382, 1548, 1591, 2291
AflIII	ACRYGT	3 cut(s)	1190, 1522, 2028
AgsI	TTSAA	8 cut(s)	196, 535, 574, 845, 866, 1036, 1519, 2090
AhdI	GACNNNNNGTC	1 cut(s)	1191
AhlI	ACTAGT	1 cut(s)	1636
AjiI	CACGTC	2 cut(s)	1191, 2029
AjnI	CCWGG	4 cut(s)	340, 552, 835, 1244
AjuI	GAANNNNNNNTTGG	4 cut(s)	134, 166, 515, 547
Alw21I	GWGCWC	2 cut(s)	753, 765
Alw26I	GTCTC	6 cut(s)	97, 490, 634, 1178, 1335, 1835
Alw44I	GTGCAC	1 cut(s)	761
AlwI	GGATC	6 cut(s)	698, 1080, 1155, 1497, 1716, 2195
AlwNI	CAGNNNCTG	1 cut(s)	559
Ama87I	CYCGRG	1 cut(s)	1988
Aor13HI	TCCGGA	1 cut(s)	2073
AoxI	GGCC	8 cut(s)	262, 965, 1377, 1385, 1527, 1917, 2270, 2282
ApaI	GGGCCC	2 cut(s)	266, 1389
ApaLI	GTGCAC	1 cut(s)	761
ApeKI	GCWGC	6 cut(s)	216, 1063, 1066, 1177, 1277, 1418
ApoI	RAATTY	1 cut(s)	911
ArsI	GACNNNNNNTTYG	2 cut(s)	602, 634
Asp718I	GGTACC	1 cut(s)	1776
AspLEI	GCGC	4 cut(s)	1616, 1789, 1987, 2215
AsuC2I	CCSGG	5 cut(s)	855, 1101, 1127, 1689, 1733
AvaI	CYCGRG	1 cut(s)	1988
AvaII	GGWCC	9 cut(s)	108, 243, 556, 776, 1662, 1968, 2005, 2071, 2266
BaeGI	GKGCMC	3 cut(s)	266, 765, 1389
BalI	TGGCCA	1 cut(s)	1919
BanI	GGYRCC	3 cut(s)	1776, 1984, 2256
BanII	GRGCYC	5 cut(s)	266, 301, 645, 753, 1389
BauI	CACGAG	1 cut(s)	1820
BbrPI	CACGTG	2 cut(s)	771, 1525
BbsI	GAAGAC	3 cut(s)	523, 873, 2249
Bbv12I	GWGCWC	2 cut(s)	753, 765
BbvI	GCAGC	6 cut(s)	228, 1050, 1078, 1164, 1264, 1430
BccI	CCATC	5 cut(s)	50, 212, 290, 1996, 2284
BceAI	ACGGC	8 cut(s)	511, 607, 628, 694, 781, 1060, 2262, 2269
BcgI	CGANNNNNNTGC	2 cut(s)	1055, 1089
BciT130I	CCWGG	4 cut(s)	342, 554, 837, 1246
BcnI	CCSGG	5 cut(s)	855, 1101, 1127, 1689, 1733
BcoDI	GTCTC	6 cut(s)	97, 490, 634, 1178, 1335, 1835
BcuI	ACTAGT	1 cut(s)	1636
BfaI	CTAG	5 cut(s)	807, 813, 1637, 1667, 2374
BfmI	CTRYAG	1 cut(s)	1064
BfoI	RGCGCY	1 cut(s)	1988
BglI	GCCNNNNNGGC	1 cut(s)	1736
Bme1390I	CCNGG	9 cut(s)	342, 554, 837, 855, 1101, 1127, 1246, 1689, 1733
Bme18I	GGWCC	9 cut(s)	108, 243, 556, 776, 1662, 1968, 2005, 2071, 2266
BmeRI	GACNNNNNGTC	1 cut(s)	1191
BmeT110I	CYCGRG	1 cut(s)	1988
BmgBI	CACGTC	2 cut(s)	1191, 2029
BmrFI	CCNGG	9 cut(s)	342, 554, 837, 855, 1101, 1127, 1246, 1689, 1733
BmsI	GCATC	3 cut(s)	1566, 1732, 1950
BoxI	GACNNNNGTC	1 cut(s)	728
BpiI	GAAGAC	3 cut(s)	523, 873, 2249
BpmI	CTGGAG	1 cut(s)	1202
BpuEI	CTTGAG	2 cut(s)	362, 1385
BpuMI	CCSGG	5 cut(s)	855, 1101, 1127, 1689, 1733
BsaAI	YACGTR	2 cut(s)	771, 1525
BsaHI	GRCGYC	3 cut(s)	567, 1539, 1985
BsaJI	CCNNGG	8 cut(s)	104, 462, 836, 871, 1731, 1972, 2019, 2126
BsaWI	WCCGGW	5 cut(s)	293, 323, 504, 1195, 2073
BsaXI	ACNNNNNCTCC	6 cut(s)	305, 335, 366, 396, 1175, 1205
Bsc4I	CCNNNNNNNGG	9 cut(s)	259, 260, 463, 639, 854, 1382, 1548, 1591, 2291
Bse118I	RCCGGY	5 cut(s)	158, 941, 1379, 1529, 2268
Bse1I	ACTGG	2 cut(s)	725, 1097
Bse3DI	GCAATG	2 cut(s)	1566, 2194
BseAI	TCCGGA	1 cut(s)	2073
BseBI	CCWGG	4 cut(s)	342, 554, 837, 1246
BseDI	CCNNGG	8 cut(s)	104, 462, 836, 871, 1731, 1972, 2019, 2126
BseGI	GGATG	4 cut(s)	881, 1471, 1581, 1965
BseLI	CCNNNNNNNGG	9 cut(s)	259, 260, 463, 639, 854, 1382, 1548, 1591, 2291
BseMI	GCAATG	2 cut(s)	1566, 2194
BseMII	CTCAG	2 cut(s)	995, 1272
BseNI	ACTGG	2 cut(s)	725, 1097
BseRI	GAGGAG	4 cut(s)	14, 17, 122, 1838
BseSI	GKGCMC	3 cut(s)	266, 765, 1389
BseX3I	CGGCCG	2 cut(s)	1377, 2270
BseXI	GCAGC	6 cut(s)	228, 1050, 1078, 1164, 1264, 1430
BseYI	CCCAGC	2 cut(s)	259, 1789
BsgI	GTGCAG	1 cut(s)	1220
Bsh1236I	CGCG	4 cut(s)	716, 1616, 1957, 1974
Bsh1285I	CGRYCG	3 cut(s)	438, 1380, 2273
BshFI	GGCC	8 cut(s)	264, 967, 1379, 1387, 1529, 1919, 2272, 2284
BshNI	GGYRCC	3 cut(s)	1776, 1984, 2256
BsiEI	CGRYCG	3 cut(s)	438, 1380, 2273
BsiHKAI	GWGCWC	2 cut(s)	753, 765
BsiHKCI	CYCGRG	1 cut(s)	1988
BsiWI	CGTACG	1 cut(s)	1401
BslFI	GGGAC	4 cut(s)	431, 1648, 1981, 2332
BslI	CCNNNNNNNGG	9 cut(s)	259, 260, 463, 639, 854, 1382, 1548, 1591, 2291
BsmAI	GTCTC	6 cut(s)	97, 490, 634, 1178, 1335, 1835
BsmBI	CGTCTC	4 cut(s)	97, 490, 634, 1178
BsmFI	GGGAC	4 cut(s)	431, 1648, 1981, 2332
BsnI	GGCC	8 cut(s)	264, 967, 1379, 1387, 1529, 1919, 2272, 2284
BsoBI	CYCGRG	1 cut(s)	1988
Bsp120I	GGGCCC	2 cut(s)	262, 1385
Bsp1286I	GDGCHC	6 cut(s)	266, 301, 645, 753, 765, 1389
Bsp1407I	TGTACA	1 cut(s)	2031
Bsp143I	GATC	9 cut(s)	703, 1072, 1147, 1443, 1489, 1708, 1802, 2010, 2187
Bsp19I	CCATGG	2 cut(s)	104, 462
BspANI	GGCC	8 cut(s)	264, 967, 1379, 1387, 1529, 1919, 2272, 2284
BspCNI	CTCAG	2 cut(s)	996, 1273
BspEI	TCCGGA	1 cut(s)	2073
BspFNI	CGCG	4 cut(s)	716, 1616, 1957, 1974
BspMAI	CTGCAG	1 cut(s)	1068
BspPI	GGATC	6 cut(s)	698, 1080, 1155, 1497, 1716, 2195
BspQI	GCTCTTC	1 cut(s)	1003
BspT107I	GGYRCC	3 cut(s)	1776, 1984, 2256
BsrBI	CCGCTC	2 cut(s)	359, 651
BsrDI	GCAATG	2 cut(s)	1566, 2194
BsrFI	RCCGGY	5 cut(s)	158, 941, 1379, 1529, 2268
BsrGI	TGTACA	1 cut(s)	2031
BsrI	ACTGG	2 cut(s)	725, 1097
BssAI	RCCGGY	5 cut(s)	158, 941, 1379, 1529, 2268
BssECI	CCNNGG	8 cut(s)	104, 462, 836, 871, 1731, 1972, 2019, 2126
BssMI	GATC	9 cut(s)	703, 1072, 1147, 1443, 1489, 1708, 1802, 2010, 2187
BssNI	GRCGYC	3 cut(s)	567, 1539, 1985
BssSI	CACGAG	1 cut(s)	1820
BssT1I	CCWWGG	4 cut(s)	104, 462, 871, 2019
Bst2BI	CACGAG	1 cut(s)	1820
Bst2UI	CCWGG	4 cut(s)	342, 554, 837, 1246
Bst6I	CTCTTC	5 cut(s)	23, 35, 197, 322, 1003
BstACI	GRCGYC	3 cut(s)	567, 1539, 1985
BstAUI	TGTACA	1 cut(s)	2031
BstBAI	YACGTR	2 cut(s)	771, 1525
BstC8I	GCNNGC	7 cut(s)	160, 606, 833, 969, 1381, 1385, 1531
BstDEI	CTNAG	3 cut(s)	1004, 1281, 2304
BstDSI	CCRYGG	3 cut(s)	104, 462, 1972
BstF5I	GGATG	4 cut(s)	881, 1471, 1581, 1965
BstFNI	CGCG	4 cut(s)	716, 1616, 1957, 1974
BstH2I	RGCGCY	1 cut(s)	1988
BstHHI	GCGC	4 cut(s)	1616, 1789, 1987, 2215
BstKTI	GATC	9 cut(s)	706, 1075, 1150, 1446, 1492, 1711, 1805, 2013, 2190
BstMAI	GTCTC	6 cut(s)	97, 490, 634, 1178, 1335, 1835
BstMBI	GATC	9 cut(s)	703, 1072, 1147, 1443, 1489, 1708, 1802, 2010, 2187
BstMCI	CGRYCG	3 cut(s)	438, 1380, 2273
BstMWI	GCNNNNNNNGC	5 cut(s)	687, 696, 857, 1736, 2205
BstNI	CCWGG	4 cut(s)	342, 554, 837, 1246
BstPAI	GACNNNNGTC	1 cut(s)	728
BstSCI	CCNGG	9 cut(s)	340, 552, 835, 853, 1099, 1125, 1244, 1687, 1731
BstSFI	CTRYAG	1 cut(s)	1064
BstSLI	GKGCMC	3 cut(s)	266, 765, 1389
BstUI	CGCG	4 cut(s)	716, 1616, 1957, 1974
BstV1I	GCAGC	6 cut(s)	228, 1050, 1078, 1164, 1264, 1430
BstV2I	GAAGAC	3 cut(s)	523, 873, 2249
BstZI	CGGCCG	2 cut(s)	1377, 2270
BsuRI	GGCC	8 cut(s)	264, 967, 1379, 1387, 1529, 1919, 2272, 2284
BtgI	CCRYGG	3 cut(s)	104, 462, 1972
BtgZI	GCGATG	1 cut(s)	2264
BtrI	CACGTC	2 cut(s)	1191, 2029
BtsCI	GGATG	4 cut(s)	881, 1471, 1581, 1965
Cac8I	GCNNGC	7 cut(s)	160, 606, 833, 969, 1381, 1385, 1531
CaiI	CAGNNNCTG	1 cut(s)	559
CfoI	GCGC	4 cut(s)	1616, 1789, 1987, 2215
Cfr10I	RCCGGY	5 cut(s)	158, 941, 1379, 1529, 2268
Cfr42I	CCGCGG	1 cut(s)	1975
CseI	GACGC	6 cut(s)	575, 610, 781, 814, 1363, 1547
CviAII	CATG	8 cut(s)	105, 463, 1030, 1168, 1345, 1942, 1981, 2191
DdeI	CTNAG	3 cut(s)	1004, 1281, 2304
DinI	GGCGCC	1 cut(s)	1986
DpnI	GATC	9 cut(s)	705, 1074, 1149, 1445, 1491, 1710, 1804, 2012, 2189
DpnII	GATC	9 cut(s)	703, 1072, 1147, 1443, 1489, 1708, 1802, 2010, 2187
DriI	GACNNNNNGTC	1 cut(s)	1191
EaeI	YGGCCR	4 cut(s)	1377, 1527, 1917, 2270
EagI	CGGCCG	2 cut(s)	1377, 2270
Eam1104I	CTCTTC	5 cut(s)	23, 35, 197, 322, 1003
Eam1105I	GACNNNNNGTC	1 cut(s)	1191
EarI	CTCTTC	5 cut(s)	23, 35, 197, 322, 1003
EciI	GGCGGA	4 cut(s)	155, 214, 343, 1568
Ecl136II	GAGCTC	1 cut(s)	751
EclXI	CGGCCG	2 cut(s)	1377, 2270
Eco130I	CCWWGG	4 cut(s)	104, 462, 871, 2019
Eco24I	GRGCYC	5 cut(s)	266, 301, 645, 753, 1389
Eco32I	GATATC	1 cut(s)	2329
Eco47I	GGWCC	9 cut(s)	108, 243, 556, 776, 1662, 1968, 2005, 2071, 2266
Eco52I	CGGCCG	2 cut(s)	1377, 2270
Eco53kI	GAGCTC	1 cut(s)	751
Eco57I	CTGAAG	3 cut(s)	964, 1946, 2246
Eco72I	CACGTG	2 cut(s)	771, 1525
Eco88I	CYCGRG	1 cut(s)	1988
EcoICRI	GAGCTC	1 cut(s)	751
EcoO109I	RGGNCCY	4 cut(s)	263, 556, 1662, 1968
EcoRII	CCWGG	4 cut(s)	340, 552, 835, 1244
EcoRV	GATATC	1 cut(s)	2329
EcoT14I	CCWWGG	4 cut(s)	104, 462, 871, 2019
EcoT22I	ATGCAT	1 cut(s)	2196
EcoT38I	GRGCYC	5 cut(s)	266, 301, 645, 753, 1389
EgeI	GGCGCC	1 cut(s)	1986
EheI	GGCGCC	1 cut(s)	1986
ErhI	CCWWGG	4 cut(s)	104, 462, 871, 2019
Esp3I	CGTCTC	4 cut(s)	97, 490, 634, 1178
FaeI	CATG	8 cut(s)	108, 466, 1033, 1171, 1348, 1945, 1984, 2194
FalI	AAGNNNNNCTT	2 cut(s)	515, 547
FaqI	GGGAC	4 cut(s)	431, 1648, 1981, 2332
FatI	CATG	8 cut(s)	104, 462, 1029, 1167, 1344, 1941, 1980, 2190
FauI	CCCGC	8 cut(s)	60, 264, 840, 938, 976, 1376, 1967, 1979
FauNDI	CATATG	1 cut(s)	986
FblI	GTMKAC	1 cut(s)	5
FokI	GGATG	4 cut(s)	888, 1478, 1588, 1972
FriOI	GRGCYC	5 cut(s)	266, 301, 645, 753, 1389
FspBI	CTAG	5 cut(s)	807, 813, 1637, 1667, 2374
GlaI	GCGC	4 cut(s)	1615, 1788, 1986, 2214
GsaI	CCCAGC	2 cut(s)	263, 1793
GsuI	CTGGAG	1 cut(s)	1202
HaeII	RGCGCY	1 cut(s)	1988
HaeIII	GGCC	8 cut(s)	264, 967, 1379, 1387, 1529, 1919, 2272, 2284
HgaI	GACGC	6 cut(s)	575, 610, 781, 814, 1363, 1547
HhaI	GCGC	4 cut(s)	1616, 1789, 1987, 2215
Hin1I	GRCGYC	3 cut(s)	567, 1539, 1985
Hin1II	CATG	8 cut(s)	108, 466, 1033, 1171, 1348, 1945, 1984, 2194
Hin6I	GCGC	4 cut(s)	1614, 1787, 1985, 2213
HinP1I	GCGC	4 cut(s)	1614, 1787, 1985, 2213
HincII	GTYRAC	2 cut(s)	934, 1704
HindII	GTYRAC	2 cut(s)	934, 1704
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	8 cut(s)	660, 992, 1026, 1229, 1438, 1715, 1756, 2086
HpyCH4IV	ACGT	7 cut(s)	234, 770, 930, 1190, 1524, 2028, 2163
HpyF10VI	GCNNNNNNNGC	5 cut(s)	687, 696, 857, 1736, 2205
HpyF3I	CTNAG	3 cut(s)	1004, 1281, 2304
HpySE526I	ACGT	7 cut(s)	234, 770, 930, 1190, 1524, 2028, 2163
Hsp92I	GRCGYC	3 cut(s)	567, 1539, 1985
Hsp92II	CATG	8 cut(s)	108, 466, 1033, 1171, 1348, 1945, 1984, 2194
HspAI	GCGC	4 cut(s)	1614, 1787, 1985, 2213
KasI	GGCGCC	1 cut(s)	1984
KflI	GGGWCCC	2 cut(s)	1662, 1968
Kpn2I	TCCGGA	1 cut(s)	2073
KpnI	GGTACC	1 cut(s)	1780
KroI	GCCGGC	3 cut(s)	158, 1379, 1529
KroNI	GCCGGC	3 cut(s)	160, 1381, 1531
KspI	CCGCGG	1 cut(s)	1975
Kzo9I	GATC	9 cut(s)	703, 1072, 1147, 1443, 1489, 1708, 1802, 2010, 2187
LguI	GCTCTTC	1 cut(s)	1003
LmnI	GCTCC	6 cut(s)	296, 387, 857, 1136, 1174, 2056
Lsp1109I	GCAGC	6 cut(s)	228, 1050, 1078, 1164, 1264, 1430
LweI	GCATC	3 cut(s)	1566, 1732, 1950
MaeI	CTAG	5 cut(s)	807, 813, 1637, 1667, 2374
MaeII	ACGT	7 cut(s)	234, 770, 930, 1190, 1524, 2028, 2163
MaeIII	GTNAC	2 cut(s)	395, 1558
MalI	GATC	9 cut(s)	705, 1074, 1149, 1445, 1491, 1710, 1804, 2012, 2189
MbiI	CCGCTC	2 cut(s)	359, 651
MboI	GATC	9 cut(s)	703, 1072, 1147, 1443, 1489, 1708, 1802, 2010, 2187
MfeI	CAATTG	1 cut(s)	1806
MhlI	GDGCHC	6 cut(s)	266, 301, 645, 753, 765, 1389
MlsI	TGGCCA	1 cut(s)	1919
MluCI	AATT	7 cut(s)	911, 961, 1156, 1254, 1588, 1782, 1806
MluNI	TGGCCA	1 cut(s)	1919
Mly113I	GGCGCC	1 cut(s)	1985
MlyI	GAGTC	4 cut(s)	654, 1001, 1238, 1709
MmeI	TCCRAC	6 cut(s)	120, 336, 657, 1708, 2034, 2292
Mox20I	TGGCCA	1 cut(s)	1919
Mph1103I	ATGCAT	1 cut(s)	2196
MroI	TCCGGA	1 cut(s)	2073
MroNI	GCCGGC	3 cut(s)	158, 1379, 1529
MscI	TGGCCA	1 cut(s)	1919
MseI	TTAA	2 cut(s)	1857, 2151
MslI	CAYNNNNRTG	1 cut(s)	1166
Msp20I	TGGCCA	1 cut(s)	1919
MspA1I	CMGCKG	3 cut(s)	259, 1069, 1974
MspR9I	CCNGG	9 cut(s)	342, 554, 837, 855, 1101, 1127, 1246, 1689, 1733
MunI	CAATTG	1 cut(s)	1806
MvaI	CCWGG	4 cut(s)	342, 554, 837, 1246
MvnI	CGCG	4 cut(s)	716, 1616, 1957, 1974
MwoI	GCNNNNNNNGC	5 cut(s)	687, 696, 857, 1736, 2205
NaeI	GCCGGC	3 cut(s)	160, 1381, 1531
NarI	GGCGCC	1 cut(s)	1985
NciI	CCSGG	5 cut(s)	855, 1101, 1127, 1689, 1733
NcoI	CCATGG	2 cut(s)	104, 462
NdeI	CATATG	1 cut(s)	986
NdeII	GATC	9 cut(s)	703, 1072, 1147, 1443, 1489, 1708, 1802, 2010, 2187
NgoMIV	GCCGGC	3 cut(s)	158, 1379, 1529
NlaIII	CATG	8 cut(s)	108, 466, 1033, 1171, 1348, 1945, 1984, 2194
NmeAIII	GCCGAG	3 cut(s)	1432, 1567, 1857
NmuCI	GTSAC	1 cut(s)	1558
NsiI	ATGCAT	1 cut(s)	2196
PciSI	GCTCTTC	1 cut(s)	1003
PcsI	WCGNNNNNNNCGW	1 cut(s)	789
PdiI	GCCGGC	3 cut(s)	160, 1381, 1531
PfeI	GAWTC	4 cut(s)	1026, 1438, 1756, 2086
Pfl23II	CGTACG	1 cut(s)	1401
PflFI	GACNNNGTC	1 cut(s)	824
PflMI	CCANNNNNTGG	1 cut(s)	463
PleI	GAGTC	4 cut(s)	654, 1000, 1237, 1709
PluTI	GGCGCC	1 cut(s)	1988
PmaCI	CACGTG	2 cut(s)	771, 1525
PmlI	CACGTG	2 cut(s)	771, 1525
PpsI	GAGTC	4 cut(s)	654, 1000, 1237, 1709
Ppu21I	YACGTR	2 cut(s)	771, 1525
PpuMI	RGGWCCY	3 cut(s)	556, 1662, 1968
PshAI	GACNNNNGTC	1 cut(s)	728
Psp124BI	GAGCTC	1 cut(s)	753
Psp1406I	AACGTT	1 cut(s)	234
Psp5II	RGGWCCY	3 cut(s)	556, 1662, 1968
Psp6I	CCWGG	4 cut(s)	340, 552, 835, 1244
PspCI	CACGTG	2 cut(s)	771, 1525
PspFI	CCCAGC	2 cut(s)	259, 1789
PspGI	CCWGG	4 cut(s)	340, 552, 835, 1244
PspLI	CGTACG	1 cut(s)	1401
PspOMI	GGGCCC	2 cut(s)	262, 1385
PspPPI	RGGWCCY	3 cut(s)	556, 1662, 1968
PstI	CTGCAG	1 cut(s)	1068
PstNI	CAGNNNCTG	1 cut(s)	559
PsyI	GACNNNGTC	1 cut(s)	824
PvuII	CAGCTG	1 cut(s)	1069
RseI	CAYNNNNRTG	1 cut(s)	1166
SacI	GAGCTC	1 cut(s)	753
SacII	CCGCGG	1 cut(s)	1975
SapI	GCTCTTC	1 cut(s)	1003
SaqAI	TTAA	2 cut(s)	1857, 2151
Sau3AI	GATC	9 cut(s)	703, 1072, 1147, 1443, 1489, 1708, 1802, 2010, 2187
SchI	GAGTC	4 cut(s)	654, 1001, 1238, 1709
ScrFI	CCNGG	9 cut(s)	342, 554, 837, 855, 1101, 1127, 1246, 1689, 1733
SduI	GDGCHC	6 cut(s)	266, 301, 645, 753, 765, 1389
SfaNI	GCATC	3 cut(s)	1566, 1732, 1950
SfcI	CTRYAG	1 cut(s)	1064
SfoI	GGCGCC	1 cut(s)	1986
Sfr303I	CCGCGG	1 cut(s)	1975
SgrBI	CCGCGG	1 cut(s)	1975
SinI	GGWCC	9 cut(s)	108, 243, 556, 776, 1662, 1968, 2005, 2071, 2266
SmiMI	CAYNNNNRTG	1 cut(s)	1166
SmlI	CTYRAG	2 cut(s)	377, 1364
SmoI	CTYRAG	2 cut(s)	377, 1364
SpeI	ACTAGT	1 cut(s)	1636
Sse9I	AATT	7 cut(s)	911, 961, 1156, 1254, 1588, 1782, 1806
SspDI	GGCGCC	1 cut(s)	1984
SspMI	CTAG	5 cut(s)	807, 813, 1637, 1667, 2374
SstI	GAGCTC	1 cut(s)	753
StyD4I	CCNGG	9 cut(s)	340, 552, 835, 853, 1099, 1125, 1244, 1687, 1731
StyI	CCWWGG	4 cut(s)	104, 462, 871, 2019
TaiI	ACGT	7 cut(s)	237, 773, 933, 1193, 1527, 2031, 2166
TaqII	GACCGA	2 cut(s)	452, 578
TasI	AATT	7 cut(s)	911, 961, 1156, 1254, 1588, 1782, 1806
TauI	GCSGC	5 cut(s)	158, 359, 1222, 1225, 1536
TfiI	GAWTC	4 cut(s)	1026, 1438, 1756, 2086
Tru1I	TTAA	2 cut(s)	1857, 2151
Tru9I	TTAA	2 cut(s)	1857, 2151
TseFI	GTSAC	1 cut(s)	1558
TseI	GCWGC	6 cut(s)	216, 1063, 1066, 1177, 1277, 1418
Tsp45I	GTSAC	1 cut(s)	1558
TspDTI	ATGAA	4 cut(s)	22, 613, 1018, 2174
TspGWI	ACGGA	7 cut(s)	79, 1149, 1187, 1502, 1588, 1721, 2348
Tth111I	GACNNNGTC	1 cut(s)	824
Van91I	CCANNNNNTGG	1 cut(s)	463
VneI	GTGCAC	1 cut(s)	761
VpaK11BI	GGWCC	9 cut(s)	108, 243, 556, 776, 1662, 1968, 2005, 2071, 2266
XapI	RAATTY	1 cut(s)	911
XcmI	CCANNNNNNNNNTGG	2 cut(s)	237, 256
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	5 cut(s)	807, 813, 1637, 1667, 2374
Zsp2I	ATGCAT	1 cut(s)	2196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.