Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8314767.1

Orthogroup ID

OG0015611

Physical Location & Seq

Genomic Coordinates Forward (+)

352 .. 930

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8314767.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgtctacctgcttcttcctcttcctcctcctcttcatcttcaccatctcaaacccgccaccctcctccgccgaacaaaccctctcctccttctccgtctccaactccccatggaccccacaaagcaatctcacgctcctctcccccaactcccacttcgccgccggcttccgccccctcccttcttccccaaacctcttcaacttctccatctggttccgcaacacctccgccccaaacgtcgtctggtccaccaaccccccgctgggcccctccgctactctctccatcacctccaccggagccctccgcctctccaactcctcctccggtcaaaacctcttgccaggaaacacctccgccgctcgaaacaccacccaactcaagctccgaaacgacggtaacttaatctacggtgcttgggacagcttcgccttcccgaccgacaccgtattaccaaaccaatccatggaaggaaacatcacgctcgtctccaaaaacggcaagttccggttcaccaactcgaccaagctcgtcttcaacctcaccgaacagtaccaggacctgaccgacgccttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

193

Amino Acids

21.07

Weight (kDa)

8.98

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015611)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33230
malus_domestica	MD16G1015600.v1.1
prunus_persica	Prupe.1G336000_v2.0.a1
pyrus_communis	pycom15g28260 pycom16g01450
rosa_chinensis	RchiOBHm_Chr4g0442381
rosa_laevigata	RLG00000006014
rosa_multiflora	Rmu_co8314767.1_g000001 Rmu_co8434117.1_g000001 Rmu_sc0000124.1_g000043
rosa_roxburghii	Rroxscaffold_5G00383230
rosa_rugosa	Rorug04G0340700
rosa_samantha	Rh4AG392300 Rh4BG406000 Rh4CG421100 Rh4DG399100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	17
AccB7I	CCANNNNNTGG	1 cut(s)	469
AccBSI	CCGCTC	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	573
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	3 cut(s)	265, 266, 469
AgsI	TTSAA	2 cut(s)	202, 541
AjnI	CCWGG	2 cut(s)	346, 558
AjuI	GAANNNNNNNTTGG	4 cut(s)	140, 172, 521, 553
AluBI	AGCT	3 cut(s)	388, 429, 532
AluI	AGCT	3 cut(s)	388, 429, 532
Alw26I	GTCTC	2 cut(s)	103, 496
AlwNI	CAGNNNCTG	1 cut(s)	565
AoxI	GGCC	1 cut(s)	268
ApaI	GGGCCC	1 cut(s)	272
AspS9I	GGNCC	5 cut(s)	114, 249, 268, 269, 562
AsuHPI	GGTGA	4 cut(s)	34, 283, 508, 538
AvaII	GGWCC	3 cut(s)	114, 249, 562
BaeGI	GKGCMC	1 cut(s)	272
BanII	GRGCYC	2 cut(s)	272, 307
BbsI	GAAGAC	1 cut(s)	529
BccI	CCATC	3 cut(s)	53, 218, 296
BceAI	ACGGC	1 cut(s)	517
BciT130I	CCWGG	2 cut(s)	348, 560
BcoDI	GTCTC	2 cut(s)	103, 496
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	2 cut(s)	162, 363
BlsI	GCNGC	2 cut(s)	163, 364
Bme1390I	CCNGG	2 cut(s)	348, 560
Bme18I	GGWCC	3 cut(s)	114, 249, 562
BmgT120I	GGNCC	5 cut(s)	114, 249, 268, 269, 562
BmiI	GGNNCC	5 cut(s)	116, 218, 270, 271, 304
BmrFI	CCNGG	2 cut(s)	348, 560
BpiI	GAAGAC	1 cut(s)	529
BpuEI	CTTGAG	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	573
BsaJI	CCNNGG	2 cut(s)	110, 468
BsaWI	WCCGGW	3 cut(s)	299, 329, 510
BsaXI	ACNNNNNCTCC	4 cut(s)	311, 341, 372, 402
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 266, 469
Bse118I	RCCGGY	1 cut(s)	164
BseBI	CCWGG	2 cut(s)	348, 560
BseDI	CCNNGG	2 cut(s)	110, 468
BseLI	CCNNNNNNNGG	3 cut(s)	265, 266, 469
BseRI	GAGGAG	7 cut(s)	17, 20, 55, 76, 128, 313, 316
BseSI	GKGCMC	1 cut(s)	272
BseYI	CCCAGC	1 cut(s)	265
Bsh1285I	CGRYCG	1 cut(s)	444
BshFI	GGCC	1 cut(s)	270
BsiEI	CGRYCG	1 cut(s)	444
BsiSI	CCGG	4 cut(s)	165, 300, 330, 511
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	3 cut(s)	265, 266, 469
BsmAI	GTCTC	2 cut(s)	103, 496
BsmBI	CGTCTC	2 cut(s)	103, 496
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	1 cut(s)	270
Bsp120I	GGGCCC	1 cut(s)	268
Bsp1286I	GDGCHC	2 cut(s)	272, 307
Bsp19I	CCATGG	2 cut(s)	110, 468
BspANI	GGCC	1 cut(s)	270
BspLI	GGNNCC	5 cut(s)	116, 218, 270, 271, 304
BspMI	ACCTGC	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	365
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	110, 468
BssNI	GRCGYC	1 cut(s)	573
BssT1I	CCWWGG	2 cut(s)	110, 468
Bst2UI	CCWGG	2 cut(s)	348, 560
Bst4CI	ACNGT	4 cut(s)	401, 416, 451, 555
Bst6I	CTCTTC	3 cut(s)	26, 38, 203
BstACI	GRCGYC	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	166
BstDSI	CCRYGG	2 cut(s)	110, 468
BstMAI	GTCTC	2 cut(s)	103, 496
BstMCI	CGRYCG	1 cut(s)	444
BstNI	CCWGG	2 cut(s)	348, 560
BstSCI	CCNGG	2 cut(s)	346, 558
BstSLI	GKGCMC	1 cut(s)	272
BstV2I	GAAGAC	1 cut(s)	529
BsuRI	GGCC	1 cut(s)	270
BtgI	CCRYGG	2 cut(s)	110, 468
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	166
CaiI	CAGNNNCTG	1 cut(s)	565
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	5 cut(s)	114, 249, 268, 269, 562
Csp6I	GTAC	1 cut(s)	556
CviAII	CATG	2 cut(s)	111, 469
CviJI	RGCY	6 cut(s)	168, 270, 305, 388, 429, 532
CviKI_1	RGCY	6 cut(s)	168, 270, 305, 388, 429, 532
CviQI	GTAC	1 cut(s)	556
Eam1104I	CTCTTC	3 cut(s)	26, 38, 203
EarI	CTCTTC	3 cut(s)	26, 38, 203
EciI	GGCGGA	5 cut(s)	58, 161, 220, 299, 349
Eco130I	CCWWGG	2 cut(s)	110, 468
Eco24I	GRGCYC	2 cut(s)	272, 307
Eco47I	GGWCC	3 cut(s)	114, 249, 562
EcoO109I	RGGNCCY	2 cut(s)	269, 562
EcoRII	CCWGG	2 cut(s)	346, 558
EcoT14I	CCWWGG	2 cut(s)	110, 468
EcoT38I	GRGCYC	2 cut(s)	272, 307
ErhI	CCWWGG	2 cut(s)	110, 468
Esp3I	CGTCTC	2 cut(s)	103, 496
FaeI	CATG	2 cut(s)	114, 472
FaiI	YATR	2 cut(s)	112, 470
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	2 cut(s)	110, 468
FauI	CCCGC	2 cut(s)	63, 270
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	162, 363
FriOI	GRGCYC	2 cut(s)	272, 307
Fsp4HI	GCNGC	2 cut(s)	162, 363
GluI	GCNGC	2 cut(s)	162, 363
GsaI	CCCAGC	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	4 cut(s)	165, 300, 330, 511
Hin1I	GRCGYC	1 cut(s)	573
Hin1II	CATG	2 cut(s)	114, 472
HpaII	CCGG	4 cut(s)	165, 300, 330, 511
HphI	GGTGA	4 cut(s)	34, 283, 508, 538
Hpy166II	GTNNAC	3 cut(s)	6, 252, 516
Hpy188I	TCNGA	1 cut(s)	392
Hpy188III	TCNNGA	1 cut(s)	439
Hpy8I	GTNNAC	3 cut(s)	6, 252, 516
Hpy99I	CGWCG	3 cut(s)	245, 401, 575
HpyAV	CCTTC	4 cut(s)	100, 192, 445, 467
HpyCH4III	ACNGT	4 cut(s)	401, 416, 451, 555
HpyCH4IV	ACGT	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	573
Hsp92II	CATG	2 cut(s)	114, 472
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
LmnI	GCTCC	3 cut(s)	141, 302, 393
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	401
MbiI	CCGCTC	1 cut(s)	365
MboII	GAAGA	7 cut(s)	7, 13, 25, 31, 177, 190, 529
MhlI	GDGCHC	2 cut(s)	272, 307
MmeI	TCCRAC	2 cut(s)	126, 342
MroNI	GCCGGC	1 cut(s)	164
MseI	TTAA	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	265
MspI	CCGG	4 cut(s)	165, 300, 330, 511
MspR9I	CCNGG	2 cut(s)	348, 560
MvaI	CCWGG	2 cut(s)	348, 560
NaeI	GCCGGC	1 cut(s)	166
NcoI	CCATGG	2 cut(s)	110, 468
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	2 cut(s)	114, 472
NlaIV	GGNNCC	5 cut(s)	116, 218, 270, 271, 304
PdiI	GCCGGC	1 cut(s)	166
PflMI	CCANNNNNTGG	1 cut(s)	469
PkrI	GCNGC	2 cut(s)	163, 364
PpuMI	RGGWCCY	1 cut(s)	562
Psp5II	RGGWCCY	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	346, 558
PspFI	CCCAGC	1 cut(s)	265
PspGI	CCWGG	2 cut(s)	346, 558
PspN4I	GGNNCC	5 cut(s)	116, 218, 270, 271, 304
PspOMI	GGGCCC	1 cut(s)	268
PspPI	GGNCC	5 cut(s)	114, 249, 268, 269, 562
PspPPI	RGGWCCY	1 cut(s)	562
PstNI	CAGNNNCTG	1 cut(s)	565
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	2 cut(s)	162, 363
Sau96I	GGNCC	5 cut(s)	114, 249, 268, 269, 562
ScrFI	CCNGG	2 cut(s)	348, 560
SduI	GDGCHC	2 cut(s)	272, 307
SinI	GGWCC	3 cut(s)	114, 249, 562
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
StyD4I	CCNGG	2 cut(s)	346, 558
StyI	CCWWGG	2 cut(s)	110, 468
TaaI	ACNGT	4 cut(s)	401, 416, 451, 555
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	367, 524
TaqII	GACCGA	1 cut(s)	458
TauI	GCSGC	2 cut(s)	164, 365
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	1 cut(s)	85
Van91I	CCANNNNNTGG	1 cut(s)	469
VpaK11BI	GGWCC	3 cut(s)	114, 249, 562
XcmI	CCANNNNNNNNNTGG	2 cut(s)	243, 262
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.