Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014345

Physical Location & Seq

Genomic Coordinates Forward (+)

29457743 .. 29461442

Gene Structure 3700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAACAGGTCGGTTGAAAAAAACGGTCGTCGTATATCGCCGAAGTCTCTCGCTCCATCTTCCTCGTCTGTCCTTCATCTTCTTCCCCCAATTTCCCTACAAAATCGACTGCTAAAAGCTTCAATTTTTTCCTCCGACGATTGTCCAACCAGCATTCTCATGGCTTCAGCTGGTTTAGCTGATATCAATGAATGGCTATCTGTTGCAGATTTTGCCCTGAAGGTTCCAGCTGAACTTGAATCGGCTTTGCGGTTGAACGCGGTTCAGTACTACATAACCAAGAGGCCGTGGCTTGATCTGTATGGAGTCAATGTGAGACCTGTTGCACCGATTGGAAGTACGAGTAGAAAAGTACAAGTTGATTCATCGCTTTTACACCGTTGCTTGCCGGATGAGCTGCTGTTTGAGGTTTTTGCACGAATGACCCCATATGACTTGGGAAGGGCAACTTGTGTTTGTCGAAAATGGAGATACACTATCCGTAACCCTGTGTTTTGGCGCAGTGCCTGCTTAAAGGCTTGGCAGCTCTCTGGGGTGGTTGAAAACTTTAAGATTTTACAAACAAACTACGACACTTCATGGAGAAAAATGTGGCTTCTAAGACCAAGGGTTCGCACTGATGGTCTGTATGTGAGCAGGAATACCTATATCCGTGCCGGAATTGCAGAATGGAAGATCAATAACCCAGTTCACTTGGTGTGCTACTACCGTTACATGCGATTGTTTCCTTCTGGCCGATTTCTCTACAAGAATTCATCTCAAAAACTCAAGGATGTAGCGAAGTTCATGAATATCCGTGGAGCCAGGGCAGACTGTGTTTTCAGTGGCCATTACACTTTGTCAGATGATAAGGTTGAAGCTGCTGTTCTGTATCCAGGAATGCGTCCTACTGTGTTGAGAATCCGACTAAGGTTAAGGGGAACAACAACAGGAGCAAACAATAGGATGGATTTACTGTCACTTGTTACAAGTGGTGTAAACAATAATGAGGTTGGCGGCCCTGATGAGGATATCCTCGGGGTGGTTGAAGGTTGGCAGGACGATGAGACTCACAACCCAGATGTGCCGGCTGTCTCGCACAAGAGGGGTCTAACACCTTTTGTCTTTGTTCCTTTTGAGGAGGTAGAGACATCATTTCTGAATCTGCCGGTGGAGAAGATGGATTATTTTGTACCAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006417 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

394

Amino Acids

44.63

Weight (kDa)

9.42

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	128 - 171	3.2e-12	F-box-like
F-box	PF00646	128 - 167	1.3e-11	F-box domain
FBO_C	PF19270	184 - 393	8.3e-104	F-box only protein C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21760 AT1G21760
fragaria_vesca	FvH4_2g27090 FvH4_2g27090 FvH4_2g27090 FvH4_2g27090
malus_domestica	MD15G1347000.v1.1
prunus_persica	Prupe.1G494700_v2.0.a1
pyrus_communis	pycom15g31130
rosa_chinensis	RchiOBHm_Chr6g0295971
rosa_laevigata	RLG00000011751
rosa_multiflora	Rmu_sc0016143.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172010
rosa_rugosa	Rorug06G0255500
rosa_samantha	Rh6AG369200 Rh6DG369700
rosa_wichuraiana	Rw6G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	260
AciI	CCGC	3 cut(s)	250, 260, 996
AcoI	YGGCCR	2 cut(s)	733, 826
AcsI	RAATTY	1 cut(s)	751
AcuI	CTGAAG	2 cut(s)	150, 239
AdeI	CACNNNGTG	1 cut(s)	697
AfaI	GTAC	4 cut(s)	269, 340, 354, 1173
AfiI	CCNNNNNNNGG	2 cut(s)	1006, 1021
AgsI	TTSAA	7 cut(s)	17, 123, 239, 256, 542, 857, 1028
AjnI	CCWGG	3 cut(s)	803, 874, 1174
AluBI	AGCT	7 cut(s)	119, 170, 179, 230, 397, 526, 860
AluI	AGCT	7 cut(s)	119, 170, 179, 230, 397, 526, 860
Alw26I	GTCTC	5 cut(s)	51, 310, 1040, 1078, 1121
AlwNI	CAGNNNCTG	1 cut(s)	507
Ama87I	CYCGRG	1 cut(s)	1016
AoxI	GGCC	4 cut(s)	284, 733, 826, 997
ApeKI	GCWGC	3 cut(s)	397, 523, 860
ApoI	RAATTY	1 cut(s)	751
ArsI	GACNNNNNNTTYG	2 cut(s)	594, 626
AspLEI	GCGC	1 cut(s)	501
AspS9I	GGNCC	1 cut(s)	998
AvaI	CYCGRG	1 cut(s)	1016
BalI	TGGCCA	1 cut(s)	828
BbvI	GCAGC	3 cut(s)	384, 535, 847
BccI	CCATC	4 cut(s)	64, 614, 940, 1153
BceAI	ACGGC	1 cut(s)	271
BciT130I	CCWGG	3 cut(s)	805, 876, 1176
BciVI	GTATCC	1 cut(s)	882
BcoDI	GTCTC	5 cut(s)	51, 310, 1040, 1078, 1121
BfuI	GTATCC	1 cut(s)	882
BisI	GCNGC	4 cut(s)	398, 524, 861, 997
BlsI	GCNGC	4 cut(s)	399, 525, 862, 998
BmcAI	AGTACT	1 cut(s)	269
Bme1390I	CCNGG	3 cut(s)	805, 876, 1176
BmeT110I	CYCGRG	1 cut(s)	1016
BmgT120I	GGNCC	1 cut(s)	998
BmiI	GGNNCC	2 cut(s)	225, 802
BmrFI	CCNGG	3 cut(s)	805, 876, 1176
BmrI	ACTGGG	1 cut(s)	680
BmuI	ACTGGG	1 cut(s)	680
BoxI	GACNNNNGTC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	752
BsaI	GGTCTC	1 cut(s)	310
BsaJI	CCNNGG	5 cut(s)	287, 605, 796, 804, 1015
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	1006, 1021
Bse118I	RCCGGY	2 cut(s)	1066, 1147
Bse1I	ACTGG	1 cut(s)	686
BseBI	CCWGG	3 cut(s)	805, 876, 1176
BseDI	CCNNGG	5 cut(s)	287, 605, 796, 804, 1015
BseGI	GGATG	3 cut(s)	397, 778, 951
BseLI	CCNNNNNNNGG	2 cut(s)	1006, 1021
BseNI	ACTGG	1 cut(s)	686
BseRI	GAGGAG	1 cut(s)	1133
BseXI	GCAGC	3 cut(s)	384, 535, 847
Bsh1236I	CGCG	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	4 cut(s)	286, 735, 828, 999
BsiEI	CGRYCG	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	1016
BsiSI	CCGG	4 cut(s)	389, 657, 1067, 1148
BslI	CCNNNNNNNGG	2 cut(s)	1006, 1021
BsmAI	GTCTC	5 cut(s)	51, 310, 1040, 1078, 1121
BsmI	GAATGC	2 cut(s)	153, 885
BsnI	GGCC	4 cut(s)	286, 735, 828, 999
Bso31I	GGTCTC	1 cut(s)	310
BsoBI	CYCGRG	1 cut(s)	1016
Bsp143I	GATC	2 cut(s)	295, 675
BspACI	CCGC	3 cut(s)	250, 260, 996
BspANI	GGCC	4 cut(s)	286, 735, 828, 999
BspFNI	CGCG	1 cut(s)	260
BspHI	TCATGA	1 cut(s)	786
BspLI	GGNNCC	2 cut(s)	225, 802
BspTNI	GGTCTC	1 cut(s)	310
BsrFI	RCCGGY	2 cut(s)	1066, 1147
BsrI	ACTGG	1 cut(s)	686
BssAI	RCCGGY	2 cut(s)	1066, 1147
BssECI	CCNNGG	5 cut(s)	287, 605, 796, 804, 1015
BssMI	GATC	2 cut(s)	295, 675
BssT1I	CCWWGG	1 cut(s)	605
Bst2UI	CCWGG	3 cut(s)	805, 876, 1176
Bst4CI	ACNGT	6 cut(s)	26, 380, 710, 815, 892, 957
BstAPI	GCANNNNNTGC	2 cut(s)	212, 507
BstC8I	GCNNGC	3 cut(s)	386, 508, 1068
BstDEI	CTNAG	2 cut(s)	599, 908
BstDSI	CCRYGG	2 cut(s)	287, 796
BstF5I	GGATG	3 cut(s)	397, 778, 951
BstFNI	CGCG	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	501
BstKTI	GATC	2 cut(s)	298, 678
BstMAI	GTCTC	5 cut(s)	51, 310, 1040, 1078, 1121
BstMBI	GATC	2 cut(s)	295, 675
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 212, 394, 507, 662
BstNI	CCWGG	3 cut(s)	805, 876, 1176
BstNSI	RCATGY	1 cut(s)	718
BstPAI	GACNNNNGTC	1 cut(s)	141
BstSCI	CCNGG	3 cut(s)	803, 874, 1174
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	3 cut(s)	384, 535, 847
BsuI	GTATCC	1 cut(s)	882
BsuRI	GGCC	4 cut(s)	286, 735, 828, 999
BtgI	CCRYGG	2 cut(s)	287, 796
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	3 cut(s)	397, 778, 951
BtsI	GCAGTG	1 cut(s)	508
BtsIMutI	CAGTG	3 cut(s)	508, 615, 829
Cac8I	GCNNGC	3 cut(s)	386, 508, 1068
CaiI	CAGNNNCTG	1 cut(s)	507
CciI	TCATGA	1 cut(s)	786
CfoI	GCGC	1 cut(s)	501
Cfr10I	RCCGGY	2 cut(s)	1066, 1147
Cfr13I	GGNCC	1 cut(s)	998
CseI	GACGC	1 cut(s)	872
Csp6I	GTAC	4 cut(s)	268, 339, 353, 1172
CviAII	CATG	4 cut(s)	160, 579, 715, 787
CviQI	GTAC	4 cut(s)	268, 339, 353, 1172
DdeI	CTNAG	2 cut(s)	599, 908
DpnI	GATC	2 cut(s)	297, 677
DpnII	GATC	2 cut(s)	295, 675
DraIII	CACNNNGTG	1 cut(s)	697
EaeI	YGGCCR	2 cut(s)	733, 826
Eco130I	CCWWGG	1 cut(s)	605
Eco31I	GGTCTC	1 cut(s)	310
Eco32I	GATATC	2 cut(s)	184, 1012
Eco57I	CTGAAG	2 cut(s)	150, 239
Eco88I	CYCGRG	1 cut(s)	1016
EcoRI	GAATTC	1 cut(s)	751
EcoRII	CCWGG	3 cut(s)	803, 874, 1174
EcoRV	GATATC	2 cut(s)	184, 1012
EcoT14I	CCWWGG	1 cut(s)	605
ErhI	CCWWGG	1 cut(s)	605
FaeI	CATG	4 cut(s)	163, 582, 718, 790
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FatI	CATG	4 cut(s)	159, 578, 714, 786
FauNDI	CATATG	1 cut(s)	430
Fnu4HI	GCNGC	4 cut(s)	398, 524, 861, 997
FokI	GGATG	3 cut(s)	404, 785, 958
Fsp4HI	GCNGC	4 cut(s)	398, 524, 861, 997
GlaI	GCGC	1 cut(s)	500
GluI	GCNGC	4 cut(s)	398, 524, 861, 997
HaeIII	GGCC	4 cut(s)	286, 735, 828, 999
HapII	CCGG	4 cut(s)	389, 657, 1067, 1148
HgaI	GACGC	1 cut(s)	872
HhaI	GCGC	1 cut(s)	501
Hin1II	CATG	4 cut(s)	163, 582, 718, 790
Hin6I	GCGC	1 cut(s)	499
HinP1I	GCGC	1 cut(s)	499
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	6 cut(s)	239, 306, 362, 900, 1048, 1141
HpaII	CCGG	4 cut(s)	389, 657, 1067, 1148
Hpy166II	GTNNAC	2 cut(s)	691, 979
Hpy188I	TCNGA	4 cut(s)	136, 844, 905, 1140
Hpy188III	TCNNGA	1 cut(s)	787
Hpy8I	GTNNAC	2 cut(s)	691, 979
Hpy99I	CGWCG	2 cut(s)	33, 140
HpyAV	CCTTC	5 cut(s)	83, 214, 435, 738, 1022
HpyCH4III	ACNGT	6 cut(s)	26, 380, 710, 815, 892, 957
HpyCH4V	TGCA	4 cut(s)	206, 326, 416, 665
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 212, 394, 507, 662
HpyF3I	CTNAG	2 cut(s)	599, 908
Hsp92II	CATG	4 cut(s)	163, 582, 718, 790
HspAI	GCGC	1 cut(s)	499
KroI	GCCGGC	1 cut(s)	1066
KroNI	GCCGGC	1 cut(s)	1068
Kzo9I	GATC	2 cut(s)	295, 675
LmnI	GCTCC	3 cut(s)	58, 800, 932
Lsp1109I	GCAGC	3 cut(s)	384, 535, 847
MaeIII	GTNAC	4 cut(s)	482, 710, 957, 964
MalI	GATC	2 cut(s)	297, 677
MboI	GATC	2 cut(s)	295, 675
MboII	GAAGA	5 cut(s)	51, 71, 74, 685, 1168
MlsI	TGGCCA	1 cut(s)	828
MluCI	AATT	4 cut(s)	90, 123, 660, 751
MluNI	TGGCCA	1 cut(s)	828
MlyI	GAGTC	2 cut(s)	315, 1042
MmeI	TCCRAC	3 cut(s)	159, 170, 928
Mox20I	TGGCCA	1 cut(s)	828
MroNI	GCCGGC	1 cut(s)	1066
MscI	TGGCCA	1 cut(s)	828
MseI	TTAA	3 cut(s)	512, 549, 914
MslI	CAYNNNNRTG	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	828
MspA1I	CMGCKG	2 cut(s)	170, 230
MspI	CCGG	4 cut(s)	389, 657, 1067, 1148
MspR9I	CCNGG	3 cut(s)	805, 876, 1176
Mva1269I	GAATGC	2 cut(s)	153, 885
MvaI	CCWGG	3 cut(s)	805, 876, 1176
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	5 cut(s)	176, 212, 394, 507, 662
NaeI	GCCGGC	1 cut(s)	1068
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	2 cut(s)	295, 675
NgoMIV	GCCGGC	1 cut(s)	1066
NlaIII	CATG	4 cut(s)	163, 582, 718, 790
NlaIV	GGNNCC	2 cut(s)	225, 802
NmuCI	GTSAC	1 cut(s)	957
NspI	RCATGY	1 cut(s)	718
PagI	TCATGA	1 cut(s)	786
PctI	GAATGC	2 cut(s)	153, 885
PdiI	GCCGGC	1 cut(s)	1068
PfeI	GAWTC	4 cut(s)	239, 362, 900, 1141
PfoI	TCCNGGA	1 cut(s)	874
PkrI	GCNGC	4 cut(s)	399, 525, 862, 998
PleI	GAGTC	2 cut(s)	314, 1042
PpsI	GAGTC	2 cut(s)	314, 1042
PshAI	GACNNNNGTC	1 cut(s)	141
Psp6I	CCWGG	3 cut(s)	803, 874, 1174
PspGI	CCWGG	3 cut(s)	803, 874, 1174
PspN4I	GGNNCC	2 cut(s)	225, 802
PspPI	GGNCC	1 cut(s)	998
PstNI	CAGNNNCTG	1 cut(s)	507
PvuII	CAGCTG	2 cut(s)	170, 230
RsaI	GTAC	4 cut(s)	269, 340, 354, 1173
RsaNI	GTAC	4 cut(s)	268, 339, 353, 1172
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	3 cut(s)	512, 549, 914
SatI	GCNGC	4 cut(s)	398, 524, 861, 997
Sau3AI	GATC	2 cut(s)	295, 675
Sau96I	GGNCC	1 cut(s)	998
ScaI	AGTACT	1 cut(s)	269
SchI	GAGTC	2 cut(s)	315, 1042
ScrFI	CCNGG	3 cut(s)	805, 876, 1176
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	4 cut(s)	90, 123, 660, 751
SsiI	CCGC	3 cut(s)	250, 260, 996
StyD4I	CCNGG	3 cut(s)	803, 874, 1174
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	6 cut(s)	26, 380, 710, 815, 892, 957
TaqI	TCGA	2 cut(s)	106, 460
TasI	AATT	4 cut(s)	90, 123, 660, 751
TatI	WGTACW	2 cut(s)	267, 352
TauI	GCSGC	1 cut(s)	999
TfiI	GAWTC	4 cut(s)	239, 362, 900, 1141
Tru1I	TTAA	3 cut(s)	512, 549, 914
Tru9I	TTAA	3 cut(s)	512, 549, 914
TscAI	CASTG	3 cut(s)	508, 622, 829
TseFI	GTSAC	1 cut(s)	957
TseI	GCWGC	3 cut(s)	397, 523, 860
Tsp45I	GTSAC	1 cut(s)	957
TspDTI	ATGAA	8 cut(s)	17, 65, 204, 354, 567, 744, 775, 803
TspGWI	ACGGA	3 cut(s)	470, 641, 785
TspRI	CASTG	3 cut(s)	508, 622, 829
XapI	RAATTY	1 cut(s)	751
XceI	RCATGY	1 cut(s)	718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
ZrmI	AGTACT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.