Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015447

Physical Location & Seq

Genomic Coordinates Reverse (-)

32387059 .. 32387406

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCTGTCGTCGAACATCAAAGGCGTGACCAACGGCTTCCCTCTGCGCGTTGAAATAGAGAAGGTGGTTGAAAAGCCGGTCGATTTCAACCCTGAATTCCTCAGGAACATGTTCCCTAAGATCGAGTGGAAGGTCCTTGTCAATGCCGCTCGTAGTATGGGCTATGTTGAGCTCCCTGAGGAGGTTGAGCCTTCTACGCTTTATTCTGAAGATTTTCTCCACAAGTTCCACCATGCCCTTTTGGAGCTTCATCTCGAGGAGGGTGCGCTTGTTTGCCCCGAGACTGGTCGCCGCTTTCCGGTTAGCAAGGGAATACCCAATATGCTGCTTCATGAAGACGAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008213 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018364 GO:0019538 GO:0022613 GO:0030488 GO:0031167 GO:0032259 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0036265 GO:0040007 GO:0042127 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048589 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070475 GO:0070476 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trm112p

Protein Analysis

116

Amino Acids

13.2

Weight (kDa)

5.19

Isoelectric Point (pI)

54.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trm112p	PF03966	2 - 104	4.3e-07	Trm112p-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22270
fragaria_vesca	FvH4_5g37330
malus_domestica	MD08G1182900.v1.1 MD15G1369300.v1.1
prunus_persica	Prupe.1G517100_v2.0.a1
pyrus_communis	pycom08g15670 pycom15g33060
rosa_chinensis	RchiOBHm_Chr7g0238971
rosa_multiflora	Rmu_sc0004132.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221430
rosa_rugosa	Rorug07G0324100
rosa_samantha	Rh7AG479100 Rh7BG451700 Rh7CG496400 Rh7DG463800
rosa_wichuraiana	Rw7G039990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	149
AccII	CGCG	1 cut(s)	48
AciI	CCGC	2 cut(s)	147, 292
AcsI	RAATTY	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	228
AfiI	CCNNNNNNNGG	3 cut(s)	181, 284, 298
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	3 cut(s)	53, 71, 88
AluBI	AGCT	2 cut(s)	172, 247
AluI	AGCT	2 cut(s)	172, 247
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	275
Ama87I	CYCGRG	2 cut(s)	254, 278
ApeKI	GCWGC	1 cut(s)	325
ApoI	RAATTY	1 cut(s)	95
Asp700I	GAANNNNTTC	2 cut(s)	110, 213
AspLEI	GCGC	2 cut(s)	48, 268
AspS9I	GGNCC	1 cut(s)	133
AvaI	CYCGRG	2 cut(s)	254, 278
AvaII	GGWCC	1 cut(s)	133
AxyI	CCTNAGG	2 cut(s)	101, 177
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	312
BceAI	ACGGC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BcoDI	GTCTC	1 cut(s)	275
BisI	GCNGC	3 cut(s)	147, 292, 326
BlsI	GCNGC	3 cut(s)	148, 293, 327
Bme18I	GGWCC	1 cut(s)	133
BmeT110I	CYCGRG	2 cut(s)	254, 278
BmgT120I	GGNCC	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 284, 298
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	289
Bse21I	CCTNAGG	2 cut(s)	101, 177
BseLI	CCNNNNNNNGG	3 cut(s)	181, 284, 298
BseMII	CTCAG	2 cut(s)	115, 168
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	2 cut(s)	194, 272
BseXI	GCAGC	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	48
Bsh1285I	CGRYCG	1 cut(s)	81
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	2 cut(s)	254, 278
BsiSI	CCGG	2 cut(s)	77, 299
BslI	CCNNNNNNNGG	3 cut(s)	181, 284, 298
BsmAI	GTCTC	1 cut(s)	275
BsoBI	CYCGRG	2 cut(s)	254, 278
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	120
BspACI	CCGC	2 cut(s)	147, 292
BspCNI	CTCAG	2 cut(s)	114, 169
BspFNI	CGCG	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	331
BsrBI	CCGCTC	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	76
BssMI	GATC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	101, 117, 177
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	2 cut(s)	48, 268
BstKTI	GATC	1 cut(s)	123
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	120
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNSI	RCATGY	1 cut(s)	112
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	342
Bsu36I	CCTNAGG	2 cut(s)	101, 177
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	2 cut(s)	48, 268
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	133
CviAII	CATG	3 cut(s)	109, 233, 332
CviJI	RGCY	6 cut(s)	36, 76, 162, 172, 190, 247
CviKI_1	RGCY	6 cut(s)	36, 76, 162, 172, 190, 247
DdeI	CTNAG	3 cut(s)	101, 117, 177
DpnI	GATC	1 cut(s)	122
DpnII	GATC	1 cut(s)	120
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	228
Eco81I	CCTNAGG	2 cut(s)	101, 177
Eco88I	CYCGRG	2 cut(s)	254, 278
EcoICRI	GAGCTC	1 cut(s)	172
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	95
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	3 cut(s)	112, 236, 335
FaiI	YATR	6 cut(s)	110, 158, 165, 234, 323, 333
FatI	CATG	3 cut(s)	108, 232, 331
Fnu4HI	GCNGC	3 cut(s)	147, 292, 326
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	3 cut(s)	147, 292, 326
GlaI	GCGC	2 cut(s)	47, 267
GluI	GCNGC	3 cut(s)	147, 292, 326
HapII	CCGG	2 cut(s)	77, 299
HhaI	GCGC	2 cut(s)	48, 268
Hin1II	CATG	3 cut(s)	112, 236, 335
Hin6I	GCGC	2 cut(s)	46, 266
HinP1I	GCGC	2 cut(s)	46, 266
HpaII	CCGG	2 cut(s)	77, 299
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	3 cut(s)	103, 254, 332
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	3 cut(s)	55, 124, 201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	3 cut(s)	101, 117, 177
Hsp92II	CATG	3 cut(s)	112, 236, 335
HspAI	GCGC	2 cut(s)	46, 266
Kzo9I	GATC	1 cut(s)	120
LmnI	GCTCC	2 cut(s)	177, 244
LpnPI	CCDG	6 cut(s)	88, 90, 105, 189, 270, 312
Lsp1109I	GCAGC	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	122
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	1 cut(s)	120
MboII	GAAGA	2 cut(s)	221, 347
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	1 cut(s)	95
MnlI	CCTC	6 cut(s)	51, 110, 172, 175, 250, 253
MroXI	GAANNNNTTC	2 cut(s)	110, 213
MspI	CCGG	2 cut(s)	77, 299
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	196
NdeII	GATC	1 cut(s)	120
NlaIII	CATG	3 cut(s)	112, 236, 335
NmuCI	GTSAC	1 cut(s)	25
NspI	RCATGY	1 cut(s)	112
PaeR7I	CTCGAG	1 cut(s)	254
PagI	TCATGA	1 cut(s)	331
PciI	ACATGT	1 cut(s)	108
PdmI	GAANNNNTTC	2 cut(s)	110, 213
PkrI	GCNGC	3 cut(s)	148, 293, 327
PpuMI	RGGWCCY	1 cut(s)	133
PscI	ACATGT	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	133
PspPPI	RGGWCCY	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	174
SatI	GCNGC	3 cut(s)	147, 292, 326
Sau3AI	GATC	1 cut(s)	120
Sau96I	GGNCC	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	5 cut(s)	66, 135, 174, 186, 249
Sfr274I	CTCGAG	1 cut(s)	254
SinI	GGWCC	1 cut(s)	133
SlaI	CTCGAG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	95
SsiI	CCGC	2 cut(s)	147, 292
SstI	GAGCTC	1 cut(s)	174
TaqI	TCGA	4 cut(s)	11, 81, 123, 255
TasI	AATT	1 cut(s)	95
TauI	GCSGC	2 cut(s)	149, 294
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	3 cut(s)	239, 320, 348
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	1 cut(s)	95
XceI	RCATGY	1 cut(s)	112
XhoI	CTCGAG	1 cut(s)	254
XmnI	GAANNNNTTC	2 cut(s)	110, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.