Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016353

Physical Location & Seq

Genomic Coordinates Forward (+)

32513311 .. 32515251

Gene Structure 1941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTACAAGGAGGCGGTGGAGAGGGTTGTGATATGCTGCGCCGCCGTGTGTCTGGAGGAGAAGGACCTCTGGGAAGGTGCGTTTGGGATCTCGGATTTGGATGAGGCGGCCGGGATTTTGACGCCGCAGACGCCTGAGAAGCTGAAGGAGTTGGTTAGGTACACGTTTTTCAAGCCACCTCCGGTTGGGTTGCTGCCCTCTTGCTTGCTCATGGATTTCATTCAGGCAATGTACTCCGAATTTGTGCAAGAGAAGAAAGAGTTGATCCACGCCATCCCCAAAAACCGAAAACTTTCAGACCTCCCCAAGATTCCTCAGCCAACCCTTATAGTTTGGGGAGAACATGATCAAGTATTTCCAGTTGAATTTGCTCACAAATTAAAGAGGCACTTGGGAGAAAATGCTCAGCTTGTAGTAATCAAGGATGCAGGGCATGCATTGAACGCAGAAAAGACCAAGGAGTACCACAAGCACATCAAGTCCTTCTTACTCGATTCACTGCCCCCTCCGATAAGTTCATCTGCTAAACATCAAAACCAGCCAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0006629 GO:0006638 GO:0006639 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016020 GO:0016021 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0031224 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044425 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_4

Protein Analysis

183

Amino Acids

20.59

Weight (kDa)

6.24

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	93 - 151	1.4e-06	alpha/beta hydrolase fold
Abhydrolase_4	PF08386	103 - 169	6.6e-07	TAP-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016353)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37170
malus_domestica	MD08G1183900.v1.1 MD15G1370400.v1.1
prunus_persica	Prupe.1G518000_v2.0.a1
pyrus_communis	pycom08g15770 pycom15g33210
rosa_chinensis	RchiOBHm_Chr7g0238751
rosa_laevigata	RLG00000000815
rosa_multiflora	Rmu_sc0010914.1_g000009
rosa_roxburghii	Rroxscaffold_3G00221580
rosa_rugosa	Rorug07G0323400
rosa_samantha	Rh7AG477700 Rh7CG495700 Rh7DG462700
rosa_wichuraiana	Rw7G039870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	14, 42, 107, 125
AclWI	GGATC	2 cut(s)	95, 259
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	2 cut(s)	239, 365
AcuI	CTGAAG	1 cut(s)	164
AcyI	GRCGYC	2 cut(s)	122, 131
AfaI	GTAC	4 cut(s)	5, 161, 233, 464
AfiI	CCNNNNNNNGG	1 cut(s)	185
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	3 cut(s)	172, 365, 442
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	2 cut(s)	142, 409
AluI	AGCT	2 cut(s)	142, 409
AlwI	GGATC	2 cut(s)	95, 259
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	2 cut(s)	36, 193
ApoI	RAATTY	2 cut(s)	239, 365
Asp700I	GAANNNNTTC	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	64
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	23, 180
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	1 cut(s)	29
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	112
BisI	GCNGC	5 cut(s)	37, 42, 108, 125, 194
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	5 cut(s)	38, 43, 109, 126, 195
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	415
BpmI	CTGGAG	1 cut(s)	74
Bpu10I	CCTNAGC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	112
BsaHI	GRCGYC	2 cut(s)	122, 131
BsaJI	CCNNGG	1 cut(s)	456
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	3 cut(s)	106, 273, 430
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	3 cut(s)	126, 329, 419
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	1 cut(s)	71
BseX3I	CGGCCG	1 cut(s)	108
BseXI	GCAGC	2 cut(s)	23, 180
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	110
BsiEI	CGRYCG	1 cut(s)	111
BsiSI	CCGG	2 cut(s)	111, 182
BslI	CCNNNNNNNGG	1 cut(s)	185
BsnI	GGCC	1 cut(s)	110
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	87, 264, 346
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	4 cut(s)	14, 42, 107, 125
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	3 cut(s)	127, 328, 418
BspPI	GGATC	2 cut(s)	95, 259
BsrDI	GCAATG	1 cut(s)	234
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	3 cut(s)	87, 264, 346
BssNI	GRCGYC	2 cut(s)	122, 131
BssT1I	CCWWGG	1 cut(s)	456
BstACI	GRCGYC	2 cut(s)	122, 131
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	206, 435
BstDEI	CTNAG	3 cut(s)	135, 315, 405
BstF5I	GGATG	3 cut(s)	106, 273, 430
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	3 cut(s)	90, 267, 349
BstMBI	GATC	3 cut(s)	87, 264, 346
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 139, 434, 443
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	110
BstV1I	GCAGC	2 cut(s)	23, 180
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BstZI	CGGCCG	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	110
BtsCI	GGATG	3 cut(s)	106, 273, 430
BtsI	GCAGTG	1 cut(s)	497
BtsIMutI	CAGTG	1 cut(s)	497
Cac8I	GCNNGC	2 cut(s)	206, 435
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	2 cut(s)	130, 139
Csp6I	GTAC	4 cut(s)	4, 160, 232, 463
CviAII	CATG	3 cut(s)	211, 344, 434
CviJI	RGCY	6 cut(s)	110, 142, 175, 319, 409, 541
CviKI_1	RGCY	6 cut(s)	110, 142, 175, 319, 409, 541
CviQI	GTAC	4 cut(s)	4, 160, 232, 463
DdeI	CTNAG	3 cut(s)	135, 315, 405
DpnI	GATC	3 cut(s)	89, 266, 348
DpnII	GATC	3 cut(s)	87, 264, 346
EaeI	YGGCCR	1 cut(s)	108
EagI	CGGCCG	1 cut(s)	108
EclXI	CGGCCG	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	64
Eco52I	CGGCCG	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	456
EcoT22I	ATGCAT	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	3 cut(s)	214, 347, 437
FaiI	YATR	5 cut(s)	34, 212, 329, 345, 435
FalI	AAGNNNNNCTT	4 cut(s)	374, 406, 470, 502
FatI	CATG	3 cut(s)	210, 343, 433
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	5 cut(s)	37, 42, 108, 125, 194
FokI	GGATG	3 cut(s)	113, 260, 437
Fsp4HI	GCNGC	5 cut(s)	37, 42, 108, 125, 194
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	5 cut(s)	37, 42, 108, 125, 194
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	2 cut(s)	111, 182
HgaI	GACGC	2 cut(s)	130, 139
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	2 cut(s)	122, 131
Hin1II	CATG	3 cut(s)	214, 347, 437
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	2 cut(s)	310, 494
HpaII	CCGG	2 cut(s)	111, 182
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	4 cut(s)	94, 238, 298, 510
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	4 cut(s)	55, 68, 139, 493
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	3 cut(s)	247, 428, 437
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 139, 434, 443
HpyF3I	CTNAG	3 cut(s)	135, 315, 405
HpySE526I	ACGT	1 cut(s)	164
Hsp92I	GRCGYC	2 cut(s)	122, 131
Hsp92II	CATG	3 cut(s)	214, 347, 437
HspAI	GCGC	1 cut(s)	39
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	87, 264, 346
LpnPI	CCDG	8 cut(s)	38, 55, 124, 147, 195, 209, 372, 414
Lsp1109I	GCAGC	2 cut(s)	23, 180
LweI	GCATC	1 cut(s)	415
MaeII	ACGT	1 cut(s)	164
MalI	GATC	3 cut(s)	89, 266, 348
MboI	GATC	3 cut(s)	87, 264, 346
MboII	GAAGA	1 cut(s)	265
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	3 cut(s)	239, 365, 377
Mph1103I	ATGCAT	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	292
MseI	TTAA	1 cut(s)	380
MspI	CCGG	2 cut(s)	111, 182
MspR9I	CCNGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	4 cut(s)	130, 139, 434, 443
NciI	CCSGG	1 cut(s)	112
NdeII	GATC	3 cut(s)	87, 264, 346
NlaIII	CATG	3 cut(s)	214, 347, 437
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	437
PdmI	GAANNNNTTC	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	310, 494
PkrI	GCNGC	5 cut(s)	38, 43, 109, 126, 195
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	64
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	4 cut(s)	5, 161, 233, 464
RsaNI	GTAC	4 cut(s)	4, 160, 232, 463
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	5 cut(s)	37, 42, 108, 125, 194
Sau3AI	GATC	3 cut(s)	87, 264, 346
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	112
SetI	ASST	8 cut(s)	69, 79, 144, 161, 167, 181, 303, 411
SfaNI	GCATC	1 cut(s)	415
SinI	GGWCC	1 cut(s)	64
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	3 cut(s)	239, 365, 377
SsiI	CCGC	4 cut(s)	14, 42, 107, 125
StyD4I	CCNGG	1 cut(s)	110
StyI	CCWWGG	1 cut(s)	456
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	492
TasI	AATT	3 cut(s)	239, 365, 377
TatI	WGTACW	2 cut(s)	3, 231
TauI	GCSGC	3 cut(s)	44, 110, 127
TfiI	GAWTC	2 cut(s)	310, 494
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	1 cut(s)	504
TseI	GCWGC	2 cut(s)	36, 193
TspDTI	ATGAA	2 cut(s)	208, 507
TspRI	CASTG	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	2 cut(s)	239, 365
XceI	RCATGY	1 cut(s)	437
XmnI	GAANNNNTTC	1 cut(s)	292
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.