Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003375

Physical Location & Seq

Genomic Coordinates Forward (+)

35041556 .. 35042809

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGATTTGCATAATCCCAAGAGAAATCAGAAATCCCAAACACCCCAACCCCCTCCGGAATTCCCAATTGGCAAGGGACTCCCACAGAGAGGGAGAGAGGGTCAATTCTTTTGTACGCCCACCAAACCCACACCCTCCCCCCTTCTCTCTCAAAACGCAAATTAGAACCCAAAAATCCAAATCAATCGCCCAGCATTACTTCCTTCGGCTGCTCCAATCCCAATACCACACTCCTCCAATCTCTTCTCTTCTCAAATTTTTGAGGATTTTTGGAAGCGCCTTCTCGTTTGGGTCAATGGCGGTGTCGACCAGTTTCGCCGGAGCAAAGTTGGAGGCTCTGCTGTCGAGATCTTCATCGTCGGCTGCAACCACGTCGTCCACGGCCTCTAGCGGTTCCTGTTTGGTGGGTTCTGTGAGGCCAATTAGGAGCCGAAGGCTCCAAATTCAGAGAGGAGTGAGGTGCGAGGTGGCTGCTTCTTCTGATGCTTCTGCTGCCGCGGTTCAGTCCGTCGCTTCCAATATCTCCGCTCTTGAGCAGCTCAAGACCTCTGCCGCTGACAGTACACACAAAGGAAAGAAGCAGCATTGTGGTCATCGGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008883 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0015995 GO:0016491 GO:0016620 GO:0016903 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0140098 GO:0140101 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

GlutR_N GlutR_dimer Shikimate_DH

Protein Analysis

201

Amino Acids

21.72

Weight (kDa)

11.24

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09940 AT1G58290
fragaria_vesca	FvH4_2g11020 FvH4_2g11020 FvH4_5g33760 FvH4_5g33760 FvH4_5g33760 FvH4_5g33760
malus_domestica	MD07G1086900.v1.1 MD08G1207100.v1.1 MD10G1058000.v1.1 MD15G1391500.v1.1
prunus_persica	Prupe.1G541100_v2.0.a1 Prupe.8G076800_v2.0.a1
pyrus_communis	pycom08g17920 pycom10g04470 pycom15g35220
rosa_chinensis	RchiOBHm_Chr6g0269231 RchiOBHm_Chr7g0233071
rosa_laevigata	RLG00000001302 RLG00000013870
rosa_multiflora	Rmu_sc0002750.1_g000007 Rmu_sc0006068.1_g000009 Rmu_sc0010747.1_g000010 Rmu_ssc0000474.1_g000021
rosa_roxburghii	Rroxscaffold_3G00227710 Rroxscaffold_7G00198920
rosa_rugosa	Rorug06G0046800 Rorug07G0277800.1
rosa_samantha	Rh6DG157400 Rh7AG433100 Rh7BG406000 Rh7CG452600 Rh7DG421700
rosa_wichuraiana	Rw6G014380 Rw7G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	527
AccI	GTMKAC	1 cut(s)	305
AccII	CGCG	1 cut(s)	497
AccIII	TCCGGA	1 cut(s)	54
AciI	CCGC	6 cut(s)	299, 390, 495, 497, 525, 552
AcsI	RAATTY	3 cut(s)	58, 254, 441
AfaI	GTAC	2 cut(s)	114, 562
AfiI	CCNNNNNNNGG	1 cut(s)	88
AjiI	CACGTC	1 cut(s)	372
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AluBI	AGCT	1 cut(s)	538
AluI	AGCT	1 cut(s)	538
Aor13HI	TCCGGA	1 cut(s)	54
AoxI	GGCC	2 cut(s)	381, 416
ApeKI	GCWGC	6 cut(s)	208, 362, 470, 491, 535, 580
ApoI	RAATTY	3 cut(s)	58, 254, 441
AspLEI	GCGC	1 cut(s)	278
BbvI	GCAGC	6 cut(s)	195, 349, 457, 478, 547, 592
BceAI	ACGGC	1 cut(s)	396
BcgI	CGANNNNNNTGC	4 cut(s)	354, 388, 452, 486
BfaI	CTAG	1 cut(s)	387
BfoI	RGCGCY	1 cut(s)	279
BglII	AGATCT	1 cut(s)	347
BisI	GCNGC	8 cut(s)	209, 363, 471, 492, 495, 536, 552, 581
BlsI	GCNGC	8 cut(s)	210, 364, 472, 493, 496, 537, 553, 582
BmgBI	CACGTC	1 cut(s)	372
BmiI	GGNNCC	3 cut(s)	394, 428, 437
BmsI	GCATC	1 cut(s)	472
BpuEI	CTTGAG	2 cut(s)	524, 551
BsaBI	GATNNNNATC	1 cut(s)	352
BsaJI	CCNNGG	2 cut(s)	378, 495
BsaWI	WCCGGW	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	309
Bse8I	GATNNNNATC	1 cut(s)	352
BseAI	TCCGGA	1 cut(s)	54
BseDI	CCNNGG	2 cut(s)	378, 495
BseJI	GATNNNNATC	1 cut(s)	352
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseNI	ACTGG	1 cut(s)	309
BseRI	GAGGAG	2 cut(s)	222, 465
BseXI	GCAGC	6 cut(s)	195, 349, 457, 478, 547, 592
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	497
BshFI	GGCC	2 cut(s)	383, 418
BsiSI	CCGG	2 cut(s)	55, 318
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	383, 418
Bsp13I	TCCGGA	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	347
BspACI	CCGC	6 cut(s)	299, 390, 495, 497, 525, 552
BspANI	GGCC	2 cut(s)	383, 418
BspEI	TCCGGA	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	497
BspLI	GGNNCC	3 cut(s)	394, 428, 437
BsrBI	CCGCTC	1 cut(s)	527
BsrI	ACTGG	1 cut(s)	309
BssECI	CCNNGG	2 cut(s)	378, 495
BssMI	GATC	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	560
Bst6I	CTCTTC	2 cut(s)	247, 252
BstDEI	CTNAG	1 cut(s)	600
BstDSI	CCRYGG	2 cut(s)	378, 495
BstFNI	CGCG	1 cut(s)	497
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	347
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	6 cut(s)	195, 349, 457, 478, 547, 592
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	383, 418
BtgI	CCRYGG	2 cut(s)	378, 495
BtrI	CACGTC	1 cut(s)	372
CfoI	GCGC	1 cut(s)	278
Cfr42I	CCGCGG	1 cut(s)	498
Csp6I	GTAC	2 cut(s)	113, 561
CviJI	RGCY	9 cut(s)	208, 335, 362, 383, 418, 429, 436, 470, 538
CviKI_1	RGCY	9 cut(s)	208, 335, 362, 383, 418, 429, 436, 470, 538
CviQI	GTAC	2 cut(s)	113, 561
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	1 cut(s)	349
DpnII	GATC	1 cut(s)	347
Eam1104I	CTCTTC	2 cut(s)	247, 252
EarI	CTCTTC	2 cut(s)	247, 252
EcoRI	GAATTC	1 cut(s)	58
FaiI	YATR	1 cut(s)	11
FaqI	GGGAC	1 cut(s)	89
FblI	GTMKAC	1 cut(s)	305
Fnu4HI	GCNGC	8 cut(s)	209, 363, 471, 492, 495, 536, 552, 581
Fsp4HI	GCNGC	8 cut(s)	209, 363, 471, 492, 495, 536, 552, 581
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	8 cut(s)	209, 363, 471, 492, 495, 536, 552, 581
GsaI	CCCAGC	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	383, 418
HapII	CCGG	2 cut(s)	55, 318
HhaI	GCGC	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HincII	GTYRAC	1 cut(s)	306
HindII	GTYRAC	1 cut(s)	306
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	2 cut(s)	55, 318
Hpy166II	GTNNAC	3 cut(s)	306, 378, 563
Hpy188I	TCNGA	4 cut(s)	29, 447, 481, 597
Hpy188III	TCNNGA	4 cut(s)	55, 345, 530, 541
Hpy8I	GTNNAC	3 cut(s)	306, 378, 563
Hpy99I	CGWCG	3 cut(s)	361, 376, 512
HpyAV	CCTTC	4 cut(s)	151, 212, 289, 426
HpyCH4III	ACNGT	1 cut(s)	560
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	2 cut(s)	9, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpyF3I	CTNAG	1 cut(s)	600
HpySE526I	ACGT	1 cut(s)	371
HspAI	GCGC	1 cut(s)	276
Kpn2I	TCCGGA	1 cut(s)	54
KspI	CCGCGG	1 cut(s)	498
Kzo9I	GATC	1 cut(s)	347
LmnI	GCTCC	4 cut(s)	216, 320, 426, 441
LpnPI	CCDG	5 cut(s)	68, 203, 322, 331, 409
Lsp1109I	GCAGC	6 cut(s)	195, 349, 457, 478, 547, 592
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	1 cut(s)	371
MalI	GATC	1 cut(s)	349
MbiI	CCGCTC	1 cut(s)	527
MboI	GATC	1 cut(s)	347
MboII	GAAGA	4 cut(s)	234, 239, 342, 468
MfeI	CAATTG	1 cut(s)	65
MflI	RGATCY	1 cut(s)	347
MluCI	AATT	7 cut(s)	58, 65, 103, 159, 254, 420, 441
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	309
MroI	TCCGGA	1 cut(s)	54
MspA1I	CMGCKG	2 cut(s)	497, 554
MspI	CCGG	2 cut(s)	55, 318
MunI	CAATTG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	1 cut(s)	491
NdeII	GATC	1 cut(s)	347
NlaIV	GGNNCC	3 cut(s)	394, 428, 437
PkrI	GCNGC	8 cut(s)	210, 364, 472, 493, 496, 537, 553, 582
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	3 cut(s)	394, 428, 437
PsuI	RGATCY	1 cut(s)	347
RsaI	GTAC	2 cut(s)	114, 562
RsaNI	GTAC	2 cut(s)	113, 561
SacII	CCGCGG	1 cut(s)	498
SalI	GTCGAC	1 cut(s)	304
SatI	GCNGC	8 cut(s)	209, 363, 471, 492, 495, 536, 552, 581
Sau3AI	GATC	1 cut(s)	347
SchI	GAGTC	1 cut(s)	71
SetI	ASST	5 cut(s)	374, 461, 468, 540, 548
SfaNI	GCATC	1 cut(s)	472
Sfr303I	CCGCGG	1 cut(s)	498
SgrBI	CCGCGG	1 cut(s)	498
SmlI	CTYRAG	2 cut(s)	530, 539
SmoI	CTYRAG	2 cut(s)	530, 539
Sse9I	AATT	7 cut(s)	58, 65, 103, 159, 254, 420, 441
SsiI	CCGC	6 cut(s)	299, 390, 495, 497, 525, 552
SspMI	CTAG	1 cut(s)	387
TaaI	ACNGT	1 cut(s)	560
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	2 cut(s)	305, 344
TasI	AATT	7 cut(s)	58, 65, 103, 159, 254, 420, 441
TatI	WGTACW	1 cut(s)	560
TauI	GCSGC	2 cut(s)	497, 554
TseI	GCWGC	6 cut(s)	208, 362, 470, 491, 535, 580
TspDTI	ATGAA	1 cut(s)	342
TspGWI	ACGGA	1 cut(s)	496
XapI	RAATTY	3 cut(s)	58, 254, 441
XmiI	GTMKAC	1 cut(s)	305
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.