Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007515

Physical Location & Seq

Genomic Coordinates Reverse (-)

35676349 .. 35679986

Gene Structure 3638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGGCGACTGATAGTGAATTTCATCAGTCTGATATACCTTCAGACCGTCAACACTCCCAGGATGTATCTTTCTCTCAAATTTTGGATCATGGTTCAATATCCTTTGGAAGATTTTCTGTAGAAACACTTGCGTGGGAAAAACGTTCTGTCTTTCGGCACAACAGATGTCAGGAGGAGCTCGAAAAATACAAGTCCAATGGATTGGTTGCTCAAAAGAAGGCTTACTTTGAAGAATATTACAAAAAAATTAGAGCCCTCAAGGTACTGCAGGCGGAGCATCAAGAAACCACTGAACCTGATCTTTGCCTGGATGGGAAGATCAATGCCTCGCAGTCCGAAAATGACAATTGTGATGACTTATCTCAAGTGACAAAGTCAGGAAATGAGACAGTCGCTAACTTGGGAAGCGTAGCGGATAAACCAGTACAACTAAACTTGAGTGACTGTAATGACAGTACTAACAAGGTTATTGTGACAGAAGAAACCAGTAAGACTCTATCAATTGAACCAGAACATGATAGAATTGGGGCTTCCTTATCACCCACTCCATCGGTCACTAGGAGCTTGAAATCTTCCCAGCCTGACAGCCCTGTCTCTGACCCTGTCAAGAATGACGCTAACAAGCCAAAGAAACATGGATCTCCTGTATTAAAGTCTAAGGGTAATGCTGCTTTACCACGGAACAAACCAAAGTTGGACTGCAAAGTTACTAGACCCAGAGATGATGTTAAGGCATCAGAGGAGTCAAAACCACGTCTGCCTCATCATTCTACTGCCAAAAGAGATAACAATCTTCTTCCTAGCAAGGGTAACACTCGTAGCTCAGCCACTGATAATAATTTCAACCATGTTTCCATACGTAAACAGCTCACTGAAGTATGCTCCAGTGCCACTGTTCACCTTGCATCAACAAGAAGTAGATTGGTGTCATTTTCTCCTAGTGGTAGAAGTCATCCAAAAAAGGAAAATTCGAATGGCAAAAATTTGGCTGATACATTACGAACAAATCCACCAGTTCATTCACGATCTGTCCAGAGTCCATCAGAACAGAAATCCATTCCTGGTGGTTTGAAGAACATGGCTATAGAGAAACGGAGCTGTACTGGAGTTTCTAGAAAGCCTTTAGACTTGGGTAGTGAGCAGATGCGACCAAAGGTTGGCCTATCTGAAAACCAGAGACCAAAATCAATGAGCTGTATTGGAGTTTCTAGAAAGCCTTTAGATTTGGGCAATCAACAAATGCGACCGAAGGTTGGCCTATCTGAGAACCAGAGACCAAAATCAATGTTCACATACAAACCTACCAAAAATAAATCGAACAAAAATTTTGGTGCTGACTATGATCGCAAGAATTGTGGAAAAGAAAGAAAGCAGAAAGAGGGAGATGAGGAAAGTAACGCTGCATGCAGAAGATATTCAAAATCTGCCGCAAGCGTGGCATCCAATACTCGGAAGAATGTAAAACTTGTGCATAAGATTGCAGAATCAAGGTCTGGGACTCTCCCACATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

505

Amino Acids

55.78

Weight (kDa)

9.6

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33320 FvH4_5g33320 FvH4_5g33320 FvH4_5g33320 FvH4_5g33320 FvH4_5g33320
malus_domestica	MD15G1395700.v1.1
prunus_persica	Prupe.1G544900_v2.0.a1 Prupe.1G544900_v2.0.a1 Prupe.1G544900_v2.0.a1
pyrus_communis	pycom15g35630
rosa_chinensis	RchiOBHm_Chr7g0232051
rosa_laevigata	RLG00000001397
rosa_multiflora	Rmu_sc0004618.1_g000018 Rmu_sc0009837.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228860 Rroxscaffold_3G00242020 Rroxscaffold_4G00331070
rosa_rugosa	Rorug07G0268700
rosa_samantha	Rh7AG423100 Rh7BG397300 Rh7CG443500 Rh7DG415400
rosa_wichuraiana	Rw0G010280 Rw7G035000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	590
AccB7I	CCANNNNNTGG	1 cut(s)	1157
AciI	CCGC	3 cut(s)	272, 413, 1428
AclI	AACGTT	1 cut(s)	142
AclWI	GGATC	2 cut(s)	93, 646
AcsI	RAATTY	5 cut(s)	17, 78, 967, 982, 1324
AcuI	CTGAAG	2 cut(s)	24, 894
AfaI	GTAC	4 cut(s)	264, 426, 457, 1102
AfiI	CCNNNNNNNGG	4 cut(s)	806, 1157, 1253, 1449
AgsI	TTSAA	7 cut(s)	96, 230, 506, 568, 844, 1072, 1419
AjiI	CACGTC	1 cut(s)	755
AjnI	CCWGG	3 cut(s)	57, 306, 1060
AleI	CACNNNNGTG	1 cut(s)	130
AluBI	AGCT	6 cut(s)	178, 564, 822, 868, 1098, 1194
AluI	AGCT	6 cut(s)	178, 564, 822, 868, 1098, 1194
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	4 cut(s)	380, 598, 1171, 1267
AlwI	GGATC	2 cut(s)	93, 646
AlwNI	CAGNNNCTG	1 cut(s)	830
AoxI	GGCC	2 cut(s)	1159, 1255
ApeKI	GCWGC	2 cut(s)	668, 1400
ApoI	RAATTY	5 cut(s)	17, 78, 967, 982, 1324
Asp700I	GAANNNNTTC	2 cut(s)	112, 1414
AsuHPI	GGTGA	2 cut(s)	531, 890
AsuII	TTCGAA	1 cut(s)	971
BanII	GRGCYC	2 cut(s)	180, 256
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	655, 1387
BccI	CCATC	3 cut(s)	305, 556, 1048
BciT130I	CCWGG	3 cut(s)	59, 308, 1062
BcoDI	GTCTC	4 cut(s)	380, 598, 1171, 1267
BfaI	CTAG	6 cut(s)	558, 711, 801, 939, 1113, 1209
BfmI	CTRYAG	3 cut(s)	117, 266, 1083
BisI	GCNGC	3 cut(s)	669, 1401, 1428
BlpI	GCTNAGC	1 cut(s)	823
BlsI	GCNGC	3 cut(s)	670, 1402, 1429
BmcAI	AGTACT	1 cut(s)	457
Bme1390I	CCNGG	3 cut(s)	59, 308, 1062
BmgBI	CACGTC	1 cut(s)	755
BmrFI	CCNGG	3 cut(s)	59, 308, 1062
BmsI	GCATC	5 cut(s)	286, 743, 914, 1134, 1448
BpmI	CTGGAG	2 cut(s)	868, 1125
Bpu1102I	GCTNAGC	1 cut(s)	823
Bpu14I	TTCGAA	1 cut(s)	971
BpuEI	CTTGAG	3 cut(s)	242, 348, 457
BsaAI	YACGTR	1 cut(s)	860
BsaBI	GATNNNNATC	1 cut(s)	789
BsaI	GGTCTC	2 cut(s)	1171, 1267
BsaJI	CCNNGG	2 cut(s)	57, 677
Bsc4I	CCNNNNNNNGG	4 cut(s)	806, 1157, 1253, 1449
Bse1I	ACTGG	5 cut(s)	422, 486, 885, 1013, 1108
Bse8I	GATNNNNATC	1 cut(s)	789
BseBI	CCWGG	3 cut(s)	59, 308, 1062
BseDI	CCNNGG	2 cut(s)	57, 677
BseGI	GGATG	4 cut(s)	67, 316, 952, 1439
BseJI	GATNNNNATC	1 cut(s)	789
BseLI	CCNNNNNNNGG	4 cut(s)	806, 1157, 1253, 1449
BseMII	CTCAG	2 cut(s)	837, 1254
BseNI	ACTGG	5 cut(s)	422, 486, 885, 1013, 1108
BseRI	GAGGAG	2 cut(s)	188, 755
BseXI	GCAGC	2 cut(s)	655, 1387
BseYI	CCCAGC	1 cut(s)	576
Bsh1285I	CGRYCG	1 cut(s)	1247
BshFI	GGCC	2 cut(s)	1161, 1257
BsiEI	CGRYCG	1 cut(s)	1247
BsiHKAI	GWGCWC	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	1510
BslI	CCNNNNNNNGG	4 cut(s)	806, 1157, 1253, 1449
BsmAI	GTCTC	4 cut(s)	380, 598, 1171, 1267
BsmFI	GGGAC	1 cut(s)	1510
BsnI	GGCC	2 cut(s)	1161, 1257
Bso31I	GGTCTC	2 cut(s)	1171, 1267
Bsp119I	TTCGAA	1 cut(s)	971
Bsp1286I	GDGCHC	2 cut(s)	180, 256
Bsp143I	GATC	6 cut(s)	85, 298, 318, 638, 1025, 1342
Bsp1720I	GCTNAGC	1 cut(s)	823
BspACI	CCGC	3 cut(s)	272, 413, 1428
BspANI	GGCC	2 cut(s)	1161, 1257
BspCNI	CTCAG	2 cut(s)	836, 1255
BspMAI	CTGCAG	1 cut(s)	270
BspPI	GGATC	2 cut(s)	93, 646
BspT104I	TTCGAA	1 cut(s)	971
BspTNI	GGTCTC	2 cut(s)	1171, 1267
BsrI	ACTGG	5 cut(s)	422, 486, 885, 1013, 1108
BssECI	CCNNGG	2 cut(s)	57, 677
BssMI	GATC	6 cut(s)	85, 298, 318, 638, 1025, 1342
Bst2UI	CCWGG	3 cut(s)	59, 308, 1062
Bst4CI	ACNGT	5 cut(s)	47, 391, 446, 455, 895
BstBAI	YACGTR	1 cut(s)	860
BstBI	TTCGAA	1 cut(s)	971
BstC8I	GCNNGC	3 cut(s)	270, 1405, 1432
BstDEI	CTNAG	3 cut(s)	657, 823, 1263
BstDSI	CCRYGG	1 cut(s)	677
BstF5I	GGATG	4 cut(s)	67, 316, 952, 1439
BstKTI	GATC	6 cut(s)	88, 301, 321, 641, 1028, 1345
BstMAI	GTCTC	4 cut(s)	380, 598, 1171, 1267
BstMBI	GATC	6 cut(s)	85, 298, 318, 638, 1025, 1342
BstMCI	CGRYCG	1 cut(s)	1247
BstMWI	GCNNNNNNNGC	2 cut(s)	274, 1436
BstNI	CCWGG	3 cut(s)	59, 308, 1062
BstNSI	RCATGY	1 cut(s)	1407
BstSCI	CCNGG	3 cut(s)	57, 306, 1060
BstSFI	CTRYAG	3 cut(s)	117, 266, 1083
BstSNI	TACGTA	1 cut(s)	860
BstV1I	GCAGC	2 cut(s)	655, 1387
BstX2I	RGATCY	1 cut(s)	638
BstXI	CCANNNNNNTGG	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	638
BsuRI	GGCC	2 cut(s)	1161, 1257
BtgI	CCRYGG	1 cut(s)	677
BtrI	CACGTC	1 cut(s)	755
BtsCI	GGATG	4 cut(s)	67, 316, 952, 1439
BtsIMutI	CAGTG	5 cut(s)	288, 828, 870, 891, 892
Cac8I	GCNNGC	3 cut(s)	270, 1405, 1432
CaiI	CAGNNNCTG	1 cut(s)	830
CseI	GACGC	1 cut(s)	623
Csp6I	GTAC	4 cut(s)	263, 425, 456, 1101
CspCI	CAANNNNNGTGG	2 cut(s)	1336, 1371
CviAII	CATG	6 cut(s)	89, 515, 635, 848, 1078, 1404
CviQI	GTAC	4 cut(s)	263, 425, 456, 1101
DdeI	CTNAG	3 cut(s)	657, 823, 1263
DpnI	GATC	6 cut(s)	87, 300, 320, 640, 1027, 1344
DpnII	GATC	6 cut(s)	85, 298, 318, 638, 1025, 1342
DrdI	GACNNNNNNGTC	1 cut(s)	590
DseDI	GACNNNNNNGTC	1 cut(s)	590
EciI	GGCGGA	1 cut(s)	287
Ecl136II	GAGCTC	1 cut(s)	178
Eco105I	TACGTA	1 cut(s)	860
Eco24I	GRGCYC	2 cut(s)	180, 256
Eco31I	GGTCTC	2 cut(s)	1171, 1267
Eco53kI	GAGCTC	1 cut(s)	178
Eco57I	CTGAAG	2 cut(s)	24, 894
EcoICRI	GAGCTC	1 cut(s)	178
EcoRII	CCWGG	3 cut(s)	57, 306, 1060
EcoT38I	GRGCYC	2 cut(s)	180, 256
FaeI	CATG	6 cut(s)	92, 518, 638, 851, 1081, 1407
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FaqI	GGGAC	1 cut(s)	1510
FatI	CATG	6 cut(s)	88, 514, 634, 847, 1077, 1403
Fnu4HI	GCNGC	3 cut(s)	669, 1401, 1428
FokI	GGATG	4 cut(s)	74, 323, 939, 1426
FriOI	GRGCYC	2 cut(s)	180, 256
Fsp4HI	GCNGC	3 cut(s)	669, 1401, 1428
FspBI	CTAG	6 cut(s)	558, 711, 801, 939, 1113, 1209
GluI	GCNGC	3 cut(s)	669, 1401, 1428
GsaI	CCCAGC	1 cut(s)	580
GsuI	CTGGAG	2 cut(s)	868, 1125
HaeIII	GGCC	2 cut(s)	1161, 1257
HgaI	GACGC	1 cut(s)	623
Hin1II	CATG	6 cut(s)	92, 518, 638, 851, 1081, 1407
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HinfI	GANTC	5 cut(s)	493, 743, 1036, 1484, 1498
HphI	GGTGA	2 cut(s)	531, 890
Hpy166II	GTNNAC	4 cut(s)	50, 863, 898, 1290
Hpy188I	TCNGA	9 cut(s)	31, 43, 337, 598, 739, 1045, 1168, 1264, 1452
Hpy188III	TCNNGA	8 cut(s)	170, 281, 378, 607, 1023, 1033, 1113, 1209
Hpy8I	GTNNAC	4 cut(s)	50, 863, 898, 1290
HpyAV	CCTTC	3 cut(s)	48, 211, 1243
HpyCH4III	ACNGT	5 cut(s)	47, 391, 446, 455, 895
HpyCH4IV	ACGT	3 cut(s)	142, 754, 859
HpyCH4V	TGCA	7 cut(s)	268, 702, 905, 1403, 1407, 1471, 1481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	274, 1436
HpyF3I	CTNAG	3 cut(s)	657, 823, 1263
HpySE526I	ACGT	3 cut(s)	142, 754, 859
Hsp92II	CATG	6 cut(s)	92, 518, 638, 851, 1081, 1407
Kzo9I	GATC	6 cut(s)	85, 298, 318, 638, 1025, 1342
LmnI	GCTCC	5 cut(s)	175, 274, 561, 887, 1095
Lsp1109I	GCAGC	2 cut(s)	655, 1387
LweI	GCATC	5 cut(s)	286, 743, 914, 1134, 1448
MaeI	CTAG	6 cut(s)	558, 711, 801, 939, 1113, 1209
MaeII	ACGT	3 cut(s)	142, 754, 859
MaeIII	GTNAC	7 cut(s)	367, 440, 472, 553, 706, 809, 1394
MalI	GATC	6 cut(s)	87, 300, 320, 640, 1027, 1344
MboI	GATC	6 cut(s)	85, 298, 318, 638, 1025, 1342
MfeI	CAATTG	2 cut(s)	346, 501
MflI	RGATCY	1 cut(s)	638
MhlI	GDGCHC	2 cut(s)	180, 256
MlyI	GAGTC	4 cut(s)	487, 752, 1045, 1492
MmeI	TCCRAC	1 cut(s)	675
MnlI	CCTC	7 cut(s)	166, 266, 337, 733, 771, 1372, 1381
MroXI	GAANNNNTTC	2 cut(s)	112, 1414
MseI	TTAA	2 cut(s)	650, 729
MslI	CAYNNNNRTG	1 cut(s)	130
MspR9I	CCNGG	3 cut(s)	59, 308, 1062
MunI	CAATTG	2 cut(s)	346, 501
MvaI	CCWGG	3 cut(s)	59, 308, 1062
MwoI	GCNNNNNNNGC	2 cut(s)	274, 1436
NdeII	GATC	6 cut(s)	85, 298, 318, 638, 1025, 1342
NlaIII	CATG	6 cut(s)	92, 518, 638, 851, 1081, 1407
NmuCI	GTSAC	4 cut(s)	367, 440, 472, 553
NspI	RCATGY	1 cut(s)	1407
NspV	TTCGAA	1 cut(s)	971
OliI	CACNNNNGTG	1 cut(s)	130
PaeI	GCATGC	1 cut(s)	1407
PdmI	GAANNNNTTC	2 cut(s)	112, 1414
PfeI	GAWTC	1 cut(s)	1484
PflFI	GACNNNGTC	2 cut(s)	373, 602
PflMI	CCANNNNNTGG	1 cut(s)	1157
PkrI	GCNGC	3 cut(s)	670, 1402, 1429
PleI	GAGTC	4 cut(s)	487, 751, 1044, 1492
PpsI	GAGTC	4 cut(s)	487, 751, 1044, 1492
Ppu21I	YACGTR	1 cut(s)	860
Psp124BI	GAGCTC	1 cut(s)	180
Psp1406I	AACGTT	1 cut(s)	142
Psp6I	CCWGG	3 cut(s)	57, 306, 1060
PspFI	CCCAGC	1 cut(s)	576
PspGI	CCWGG	3 cut(s)	57, 306, 1060
PstI	CTGCAG	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	830
PsuI	RGATCY	1 cut(s)	638
PsyI	GACNNNGTC	2 cut(s)	373, 602
RsaI	GTAC	4 cut(s)	264, 426, 457, 1102
RsaNI	GTAC	4 cut(s)	263, 425, 456, 1101
RseI	CAYNNNNRTG	1 cut(s)	130
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	650, 729
SatI	GCNGC	3 cut(s)	669, 1401, 1428
Sau3AI	GATC	6 cut(s)	85, 298, 318, 638, 1025, 1342
ScaI	AGTACT	1 cut(s)	457
SchI	GAGTC	4 cut(s)	487, 752, 1045, 1492
ScrFI	CCNGG	3 cut(s)	59, 308, 1062
SduI	GDGCHC	2 cut(s)	180, 256
SfaNI	GCATC	5 cut(s)	286, 743, 914, 1134, 1448
SfcI	CTRYAG	3 cut(s)	117, 266, 1083
SfuI	TTCGAA	1 cut(s)	971
SmiMI	CAYNNNNRTG	1 cut(s)	130
SmlI	CTYRAG	3 cut(s)	257, 363, 436
SmoI	CTYRAG	3 cut(s)	257, 363, 436
SnaBI	TACGTA	1 cut(s)	860
SphI	GCATGC	1 cut(s)	1407
SsiI	CCGC	3 cut(s)	272, 413, 1428
SspI	AATATT	1 cut(s)	236
SspMI	CTAG	6 cut(s)	558, 711, 801, 939, 1113, 1209
SstI	GAGCTC	1 cut(s)	180
StyD4I	CCNGG	3 cut(s)	57, 306, 1060
TaaI	ACNGT	5 cut(s)	47, 391, 446, 455, 895
TaiI	ACGT	3 cut(s)	145, 757, 862
TaqI	TCGA	3 cut(s)	180, 971, 1316
TaqII	GACCGA	2 cut(s)	541, 1261
TatI	WGTACW	3 cut(s)	424, 455, 1100
TauI	GCSGC	1 cut(s)	1430
TfiI	GAWTC	1 cut(s)	1484
Tru1I	TTAA	2 cut(s)	650, 729
Tru9I	TTAA	2 cut(s)	650, 729
TscAI	CASTG	5 cut(s)	295, 835, 877, 892, 898
TseFI	GTSAC	4 cut(s)	367, 440, 472, 553
TseI	GCWGC	2 cut(s)	668, 1400
Tsp45I	GTSAC	4 cut(s)	367, 440, 472, 553
TspDTI	ATGAA	2 cut(s)	11, 1007
TspGWI	ACGGA	2 cut(s)	694, 1108
TspRI	CASTG	5 cut(s)	295, 835, 877, 892, 898
Tth111I	GACNNNGTC	2 cut(s)	373, 602
Van91I	CCANNNNNTGG	1 cut(s)	1157
XapI	RAATTY	5 cut(s)	17, 78, 967, 982, 1324
XbaI	TCTAGA	2 cut(s)	1112, 1208
XceI	RCATGY	1 cut(s)	1407
XmnI	GAANNNNTTC	2 cut(s)	112, 1414
XspI	CTAG	6 cut(s)	558, 711, 801, 939, 1113, 1209
ZrmI	AGTACT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.