pycom15g36980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015636
Physical Location & Seq
Reverse (-)
36959059 .. 36960484
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 672 bp
ATGGGTAATTGTGCTAGTGAACCAAAGACCAAGGGTGATGATGCTGCTGCAGTCCCAGCACCGGAGCCCAGGAAGGAGTCGGTTCAGGCCGAGGAGGTGAACGCTGAGCAGCTGCAGGAAGAAAACAAGGCCGAACAAAATACCGATGGTGGTCATAACAAACAACCCTCTCTCGGGGCCTTGCTCAAGGAGGAAGAAGAGAAGAGAGCCGAAGTGGCGGCAAAGGTAGAAGAAGAGAAGATAGCTGAAGTTGCGGAAAAGCTAGAAGAAGAGAAGATAGCTGAAGTTGCGGCAAAGCTAGAAGAAGCAGAAGAAAAGCCAAAGACCACTGAGAAGAATGAGGAGATAGCGGTTGAGCTCGAGAAATCACCTCAAGCAGCAGCACCAGCTGCAGTTACCCAAGAAGACAAGAAATTTGATATTGAGGAGAAGAGAGAGGAGATAGCGGTTGAGCTCGAGAAATCACCTGAAGTAGCAGCACCAGCTGCAGTTACCCAAGAAGACAAGAAATCTGATATTGAGGAGAAGAAACCCGAAGAGGTAAAGGAGACAAAACCAGAAGAGAAGCTGGTAAAACCAAAAGAGATCAAGGAGACAAAAGCAGAAGAGACCACGATGACAAAAACAGAAGAGACCAAGGAGACAAAACCTGAAGTGAAAGACCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4694

Protein Analysis

224

Amino Acids

24.74

Weight (kDa)

4.6

Isoelectric Point (pI)

72.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g30481
malus_domestica MD08G1223500.v1.1 MD15G1417000.v1.1
prunus_persica Prupe.1G560900_v2.0.a1
pyrus_communis pycom15g36980
rosa_chinensis RchiOBHm_Chr7g0225161
rosa_laevigata RLG00000001842
rosa_multiflora Rmu_sc0000322.1_g000003 Rmu_sc0003737.1_g000006
rosa_roxburghii Rroxscaffold_3G00234180
rosa_rugosa Rorug07G0227700
rosa_samantha Rh7AG376000 Rh7BG362600 Rh7CG394600 Rh7DG373400
rosa_wichuraiana Rw7G031500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 218, 254, 290, 350, 446
AcsI RAATTY 1 cut(s) 413
AcuI CTGAAG 4 cut(s) 267, 303, 489, 672
AfiI CCNNNNNNNGG 3 cut(s) 61, 173, 174
AjnI CCWGG 1 cut(s) 68
Alw21I GWGCWC 2 cut(s) 360, 456
Alw26I GTCTC 5 cut(s) 542, 587, 602, 626, 635
Ama87I CYCGRG 3 cut(s) 173, 359, 455
AoxI GGCC 3 cut(s) 87, 129, 177
ApeKI GCWGC 9 cut(s) 44, 47, 109, 112, 377, 380, 389, 476, 485
ApoI RAATTY 1 cut(s) 413
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AspS9I GGNCC 1 cut(s) 177
AsuHPI GGTGA 4 cut(s) 47, 109, 360, 456
AvaI CYCGRG 3 cut(s) 173, 359, 455
BanII GRGCYC 3 cut(s) 69, 360, 456
BbsI GAAGAC 2 cut(s) 411, 507
Bbv12I GWGCWC 2 cut(s) 360, 456
BbvI GCAGC 9 cut(s) 31, 34, 99, 121, 376, 389, 392, 472, 488
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 70
BcoDI GTCTC 5 cut(s) 542, 587, 602, 626, 635
BfaI CTAG 3 cut(s) 15, 263, 299
BfmI CTRYAG 4 cut(s) 48, 113, 390, 486
BglI GCCNNNNNGGC 1 cut(s) 215
BlpI GCTNAGC 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 70
BmeT110I CYCGRG 3 cut(s) 173, 359, 455
BmgT120I GGNCC 1 cut(s) 177
BmiI GGNNCC 2 cut(s) 66, 178
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 31
BpiI GAAGAC 2 cut(s) 411, 507
Bpu1102I GCTNAGC 1 cut(s) 105
BpuEI CTTGAG 2 cut(s) 170, 357
BsaI GGTCTC 2 cut(s) 602, 626
BsaJI CCNNGG 4 cut(s) 30, 68, 90, 636
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 173, 174
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 4 cut(s) 30, 68, 90, 636
BseLI CCNNNNNNNGG 3 cut(s) 61, 173, 174
BseMII CTCAG 2 cut(s) 96, 321
BseRI GAGGAG 5 cut(s) 107, 356, 440, 452, 536
BseXI GCAGC 9 cut(s) 31, 34, 99, 121, 376, 389, 392, 472, 488
BseYI CCCAGC 1 cut(s) 55
BshFI GGCC 3 cut(s) 89, 131, 179
BsiHKAI GWGCWC 2 cut(s) 360, 456
BsiHKCI CYCGRG 3 cut(s) 173, 359, 455
BsiSI CCGG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 3 cut(s) 61, 173, 174
BsmAI GTCTC 5 cut(s) 542, 587, 602, 626, 635
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 3 cut(s) 89, 131, 179
Bso31I GGTCTC 2 cut(s) 602, 626
BsoBI CYCGRG 3 cut(s) 173, 359, 455
Bsp1286I GDGCHC 3 cut(s) 69, 360, 456
Bsp143I GATC 1 cut(s) 585
Bsp1720I GCTNAGC 1 cut(s) 105
BspACI CCGC 5 cut(s) 218, 254, 290, 350, 446
BspANI GGCC 3 cut(s) 89, 131, 179
BspCNI CTCAG 2 cut(s) 97, 322
BspLI GGNNCC 2 cut(s) 66, 178
BspMAI CTGCAG 4 cut(s) 52, 117, 394, 490
BspTNI GGTCTC 2 cut(s) 602, 626
BssECI CCNNGG 4 cut(s) 30, 68, 90, 636
BssMI GATC 1 cut(s) 585
BssT1I CCWWGG 2 cut(s) 30, 636
Bst2UI CCWGG 1 cut(s) 70
Bst6I CTCTTC 9 cut(s) 192, 197, 228, 264, 425, 531, 555, 600, 624
BstAPI GCANNNNNTGC 2 cut(s) 389, 485
BstDEI CTNAG 2 cut(s) 105, 330
BstKTI GATC 1 cut(s) 588
BstMAI GTCTC 5 cut(s) 542, 587, 602, 626, 635
BstMBI GATC 1 cut(s) 585
BstMWI GCNNNNNNNGC 8 cut(s) 56, 215, 251, 287, 386, 389, 482, 485
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 4 cut(s) 48, 113, 390, 486
BstV1I GCAGC 9 cut(s) 31, 34, 99, 121, 376, 389, 392, 472, 488
BstV2I GAAGAC 2 cut(s) 411, 507
BsuRI GGCC 3 cut(s) 89, 131, 179
BtsIMutI CAGTG 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 177
DdeI CTNAG 2 cut(s) 105, 330
DpnI GATC 1 cut(s) 587
DpnII GATC 1 cut(s) 585
Eam1104I CTCTTC 9 cut(s) 192, 197, 228, 264, 425, 531, 555, 600, 624
EarI CTCTTC 9 cut(s) 192, 197, 228, 264, 425, 531, 555, 600, 624
Ecl136II GAGCTC 2 cut(s) 358, 454
Eco130I CCWWGG 2 cut(s) 30, 636
Eco24I GRGCYC 3 cut(s) 69, 360, 456
Eco31I GGTCTC 2 cut(s) 602, 626
Eco53kI GAGCTC 2 cut(s) 358, 454
Eco57I CTGAAG 4 cut(s) 267, 303, 489, 672
Eco88I CYCGRG 3 cut(s) 173, 359, 455
EcoICRI GAGCTC 2 cut(s) 358, 454
EcoO109I RGGNCCY 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 2 cut(s) 30, 636
EcoT38I GRGCYC 3 cut(s) 69, 360, 456
ErhI CCWWGG 2 cut(s) 30, 636
FaiI YATR 2 cut(s) 156, 670
FaqI GGGAC 1 cut(s) 38
FriOI GRGCYC 3 cut(s) 69, 360, 456
FspBI CTAG 3 cut(s) 15, 263, 299
GsaI CCCAGC 1 cut(s) 59
HaeIII GGCC 3 cut(s) 89, 131, 179
HapII CCGG 1 cut(s) 62
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 62
HphI GGTGA 4 cut(s) 47, 109, 360, 456
Hpy166II GTNNAC 2 cut(s) 20, 100
Hpy188I TCNGA 1 cut(s) 514
Hpy188III TCNNGA 2 cut(s) 361, 457
Hpy8I GTNNAC 2 cut(s) 20, 100
HpyAV CCTTC 1 cut(s) 67
HpyCH4V TGCA 4 cut(s) 50, 115, 392, 488
HpyF10VI GCNNNNNNNGC 8 cut(s) 56, 215, 251, 287, 386, 389, 482, 485
HpyF3I CTNAG 2 cut(s) 105, 330
Kzo9I GATC 1 cut(s) 585
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 9 cut(s) 31, 34, 99, 121, 376, 389, 392, 472, 488
LweI GCATC 1 cut(s) 31
MaeI CTAG 3 cut(s) 15, 263, 299
MaeIII GTNAC 2 cut(s) 394, 490
MalI GATC 1 cut(s) 587
MboI GATC 1 cut(s) 585
MhlI GDGCHC 3 cut(s) 69, 360, 456
MluCI AATT 2 cut(s) 7, 413
MlyI GAGTC 1 cut(s) 86
MspA1I CMGCKG 3 cut(s) 112, 389, 485
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 8 cut(s) 56, 215, 251, 287, 386, 389, 482, 485
NdeII GATC 1 cut(s) 585
NlaIV GGNNCC 2 cut(s) 66, 178
NmeAIII GCCGAG 1 cut(s) 115
PaeR7I CTCGAG 2 cut(s) 359, 455
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Psp124BI GAGCTC 2 cut(s) 360, 456
Psp6I CCWGG 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 66, 178
PspPI GGNCC 1 cut(s) 177
PstI CTGCAG 4 cut(s) 52, 117, 394, 490
PvuII CAGCTG 3 cut(s) 112, 389, 485
SacI GAGCTC 2 cut(s) 360, 456
Sau3AI GATC 1 cut(s) 585
Sau96I GGNCC 1 cut(s) 177
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 3 cut(s) 69, 360, 456
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 4 cut(s) 48, 113, 390, 486
Sfr274I CTCGAG 2 cut(s) 359, 455
SlaI CTCGAG 2 cut(s) 359, 455
SmlI CTYRAG 4 cut(s) 185, 359, 372, 455
SmoI CTYRAG 4 cut(s) 185, 359, 372, 455
Sse9I AATT 2 cut(s) 7, 413
SsiI CCGC 5 cut(s) 218, 254, 290, 350, 446
SspMI CTAG 3 cut(s) 15, 263, 299
SstI GAGCTC 2 cut(s) 360, 456
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 2 cut(s) 30, 636
TaqI TCGA 2 cut(s) 360, 456
TasI AATT 2 cut(s) 7, 413
TauI GCSGC 2 cut(s) 221, 293
TscAI CASTG 1 cut(s) 334
TseI GCWGC 9 cut(s) 44, 47, 109, 112, 377, 380, 389, 476, 485
TspRI CASTG 1 cut(s) 334
XapI RAATTY 1 cut(s) 413
XhoI CTCGAG 2 cut(s) 359, 455
XspI CTAG 3 cut(s) 15, 263, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.