Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002499

Physical Location & Seq

Genomic Coordinates Reverse (-)

37466200 .. 37470816

Gene Structure 4617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g37540.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGTATTTTCCCAGAAGAGGTTCTCAGTTTACACCTCCGCATTATTCAGTTGATTTCTATTGGAAAGATTATTGCCCGATGGTCTTCAGGAATTTAAGGGAGATGTTTAAATTAGATGCTGCCGAGTACATGATGTCCATTTGTGGCGATGATGGTTTAAGAGAGCTTTCTTCTCCGGGGAAAAGTGGCAGTATCTTCTATCTTTCTCATGATGACAGATTTGTCATCAAGACTTTAAGAAAATCAGAACTGAAGGTTCTGCTCAAGATGCTGCCTAGCTATTATTGCCATGTAGGAGAACATGAAAACACTCTCATCACAAAATTTTTTGGGCTCCATCGGATAACATTAAAAGGTGGAAAAAAGGTACGGTTTATGGTCATGGGGAATATGTTTTGCACTGAATTAAGAATTCATCGCCGTTATGATTTGAAGGGTTCATCTATTGGAAGATGCACAGACAAAAATAAAATTAAAGAGAATACCACATTGAAGGATCTCGATCTGTCATTTGAATTTCATATGGACAAACTGTTGCGAGAAGCCCTTTTCAAGCAAATATCACTAGACTGCATGTTTCTACAATCTCAGCAGATTATCGATTATAGCCTTCTGTTGGGTCTACATTTTAGAGCTCCCGAGAATCTGAAGGGATTTTCACAACCTCCTGCTACAATGCACAATGATGAGAGTTTACCTACTAATGATGGTGTGACTTCTCAAGGGGAGCTTTTGATTCCTCCTAAAGGTCTTCTGCTGGTAACCCATGAGCCTGGCTCTGTCAGTACCGCACCAGGTCCTCACATCAGAGGAAGTACATTGAAAGCTTATTCTCTCGGTGACAAAGAAGTTGATCTTCTAGTCCCCGGTACAGGAAGGTTAAGAGTGCAATTAGGTGTAAACATGCCAGCCCAGGCCTATCATAAGCTTGCGCAGGACGAGGTCGATTCAACAGAAGTAGAACTTTTTGAATTTTACGACGTGGTTCTTTATATGGGGATAATTGATATACTGCAGGAATACAACGCGAAGAAGAAACTTGAGCATGCTTACAAATCATTGCGGTTTGATCCTCGATGCATTTCTGCTGTGGAACCAAAGCTGTATGCTAAGCGTTTCATCAATTTCTTGGAGAAGGTTTTTCCGGACCTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

386

Amino Acids

44.23

Weight (kDa)

8.49

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10900 AT1G10900 AT1G10900 AT1G60890 AT1G60890
fragaria_vesca	FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440
malus_domestica	MD08G1229900.v1.1 MD08G1230300.v1.1 MD15G1423400.v1.1
prunus_persica	Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1
pyrus_communis	pycom08g20000 pycom08g20030 pycom15g37540
rosa_chinensis	RchiOBHm_Chr7g0222421
rosa_laevigata	RLG00000002062
rosa_multiflora	Rmu_sc0008769.1_g000006
rosa_roxburghii	Rroxscaffold_3G00236990
rosa_rugosa	Rorug07G0208300 Rorug07G0208400
rosa_samantha	Rh7CG368000 Rh7DG347200
rosa_wichuraiana	Rw7G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
Acc16I	TGCGCA	1 cut(s)	933
AccI	GTMKAC	1 cut(s)	622
AccII	CGCG	1 cut(s)	1028
AccIII	TCCGGA	1 cut(s)	1144
AciI	CCGC	3 cut(s)	38, 789, 1063
AclWI	GGATC	2 cut(s)	504, 1064
AcsI	RAATTY	5 cut(s)	91, 323, 411, 515, 971
AcuI	CTGAAG	3 cut(s)	70, 272, 668
AfaI	GTAC	5 cut(s)	128, 369, 787, 817, 871
AfiI	CCNNNNNNNGG	4 cut(s)	17, 616, 746, 872
AgsI	TTSAA	7 cut(s)	433, 493, 515, 553, 823, 951, 971
AjiI	CACGTC	1 cut(s)	982
AjnI	CCWGG	3 cut(s)	772, 793, 912
AluBI	AGCT	7 cut(s)	166, 279, 635, 730, 827, 928, 1102
AluI	AGCT	7 cut(s)	166, 279, 635, 730, 827, 928, 1102
Alw21I	GWGCWC	1 cut(s)	637
AlwI	GGATC	2 cut(s)	504, 1064
Ama87I	CYCGRG	1 cut(s)	638
Aor13HI	TCCGGA	1 cut(s)	1144
AoxI	GGCC	1 cut(s)	915
ApeKI	GCWGC	2 cut(s)	119, 271
ApoI	RAATTY	5 cut(s)	91, 323, 411, 515, 971
Asp700I	GAANNNNTTC	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	934
AspS9I	GGNCC	2 cut(s)	797, 1147
AsuC2I	CCSGG	2 cut(s)	177, 867
AsuHPI	GGTGA	1 cut(s)	851
AvaI	CYCGRG	1 cut(s)	638
AvaII	GGWCC	2 cut(s)	797, 1147
BanII	GRGCYC	2 cut(s)	336, 637
BbsI	GAAGAC	2 cut(s)	76, 743
Bbv12I	GWGCWC	1 cut(s)	637
BbvI	GCAGC	2 cut(s)	106, 258
BccI	CCATC	4 cut(s)	73, 146, 345, 701
BceAI	ACGGC	1 cut(s)	405
BciT130I	CCWGG	3 cut(s)	774, 795, 914
BcnI	CCSGG	2 cut(s)	177, 867
BfaI	CTAG	3 cut(s)	276, 566, 860
BfmI	CTRYAG	1 cut(s)	1013
BisI	GCNGC	2 cut(s)	120, 272
BlpI	GCTNAGC	1 cut(s)	1110
BlsI	GCNGC	2 cut(s)	121, 273
Bme1390I	CCNGG	5 cut(s)	177, 774, 795, 867, 914
Bme18I	GGWCC	2 cut(s)	797, 1147
BmeT110I	CYCGRG	1 cut(s)	638
BmgBI	CACGTC	1 cut(s)	982
BmgT120I	GGNCC	2 cut(s)	797, 1147
BmiI	GGNNCC	2 cut(s)	335, 1095
BmrFI	CCNGG	5 cut(s)	177, 774, 795, 867, 914
BmsI	GCATC	4 cut(s)	106, 258, 443, 1067
BpiI	GAAGAC	2 cut(s)	76, 743
BplI	GAGNNNNNCTC	2 cut(s)	761, 793
Bpu1102I	GCTNAGC	1 cut(s)	1110
BpuEI	CTTGAG	3 cut(s)	248, 705, 1061
BpuMI	CCSGG	2 cut(s)	177, 867
Bsa29I	ATCGAT	1 cut(s)	600
BsaBI	GATNNNNATC	1 cut(s)	501
BsaJI	CCNNGG	3 cut(s)	176, 865, 912
BsaWI	WCCGGW	1 cut(s)	1144
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 616, 746, 872
Bse3DI	GCAATG	1 cut(s)	1058
Bse8I	GATNNNNATC	1 cut(s)	501
BseAI	TCCGGA	1 cut(s)	1144
BseBI	CCWGG	3 cut(s)	774, 795, 914
BseCI	ATCGAT	1 cut(s)	600
BseDI	CCNNGG	3 cut(s)	176, 865, 912
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	4 cut(s)	17, 616, 746, 872
BseMI	GCAATG	1 cut(s)	1058
BseMII	CTCAG	2 cut(s)	38, 602
BseXI	GCAGC	2 cut(s)	106, 258
Bsh1236I	CGCG	1 cut(s)	1028
BshFI	GGCC	1 cut(s)	917
BshVI	ATCGAT	1 cut(s)	600
BsiHKAI	GWGCWC	1 cut(s)	637
BsiHKCI	CYCGRG	1 cut(s)	638
BsiSI	CCGG	3 cut(s)	176, 867, 1145
BslFI	GGGAC	1 cut(s)	848
BslI	CCNNNNNNNGG	4 cut(s)	17, 616, 746, 872
BsmFI	GGGAC	1 cut(s)	848
BsnI	GGCC	1 cut(s)	917
BsoBI	CYCGRG	1 cut(s)	638
Bsp1286I	GDGCHC	2 cut(s)	336, 637
Bsp13I	TCCGGA	1 cut(s)	1144
Bsp143I	GATC	4 cut(s)	496, 502, 853, 1069
Bsp1720I	GCTNAGC	1 cut(s)	1110
BspACI	CCGC	3 cut(s)	38, 789, 1063
BspANI	GGCC	1 cut(s)	917
BspCNI	CTCAG	2 cut(s)	37, 601
BspDI	ATCGAT	1 cut(s)	600
BspEI	TCCGGA	1 cut(s)	1144
BspFNI	CGCG	1 cut(s)	1028
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	335, 1095
BspMAI	CTGCAG	1 cut(s)	1017
BspPI	GGATC	2 cut(s)	504, 1064
BsrDI	GCAATG	1 cut(s)	1058
BssECI	CCNNGG	3 cut(s)	176, 865, 912
BssMI	GATC	4 cut(s)	496, 502, 853, 1069
Bst2UI	CCWGG	3 cut(s)	774, 795, 914
Bst4CI	ACNGT	2 cut(s)	372, 534
Bst6I	CTCTTC	1 cut(s)	10
BstC8I	GCNNGC	3 cut(s)	909, 930, 1047
BstDEI	CTNAG	3 cut(s)	24, 588, 1110
BstEII	GGTNACC	1 cut(s)	760
BstENI	CCTNNNNNAGG	1 cut(s)	744
BstFNI	CGCG	1 cut(s)	1028
BstHHI	GCGC	1 cut(s)	934
BstKTI	GATC	4 cut(s)	499, 505, 856, 1072
BstMBI	GATC	4 cut(s)	496, 502, 853, 1069
BstMWI	GCNNNNNNNGC	2 cut(s)	268, 285
BstNI	CCWGG	3 cut(s)	774, 795, 914
BstNSI	RCATGY	3 cut(s)	577, 907, 1049
BstPI	GGTNACC	1 cut(s)	760
BstSCI	CCNGG	5 cut(s)	175, 772, 793, 865, 912
BstSFI	CTRYAG	1 cut(s)	1013
BstUI	CGCG	1 cut(s)	1028
BstV1I	GCAGC	2 cut(s)	106, 258
BstV2I	GAAGAC	2 cut(s)	76, 743
BstX2I	RGATCY	1 cut(s)	496
BstXI	CCANNNNNNTGG	1 cut(s)	773
BstYI	RGATCY	1 cut(s)	496
Bsu15I	ATCGAT	1 cut(s)	600
BsuRI	GGCC	1 cut(s)	917
BsuTUI	ATCGAT	1 cut(s)	600
BtgZI	GCGATG	2 cut(s)	162, 401
BtrI	CACGTC	1 cut(s)	982
BtsIMutI	CAGTG	1 cut(s)	399
Cac8I	GCNNGC	3 cut(s)	909, 930, 1047
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	1 cut(s)	934
Cfr13I	GGNCC	2 cut(s)	797, 1147
ClaI	ATCGAT	1 cut(s)	600
CsiI	ACCWGGT	1 cut(s)	793
Csp6I	GTAC	5 cut(s)	127, 368, 786, 816, 870
CviQI	GTAC	5 cut(s)	127, 368, 786, 816, 870
DdeI	CTNAG	3 cut(s)	24, 588, 1110
DpnI	GATC	4 cut(s)	498, 504, 855, 1071
DpnII	GATC	4 cut(s)	496, 502, 853, 1069
DraI	TTTAAA	1 cut(s)	109
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
Ecl136II	GAGCTC	1 cut(s)	635
Eco147I	AGGCCT	1 cut(s)	917
Eco24I	GRGCYC	2 cut(s)	336, 637
Eco47I	GGWCC	2 cut(s)	797, 1147
Eco53kI	GAGCTC	1 cut(s)	635
Eco57I	CTGAAG	3 cut(s)	70, 272, 668
Eco88I	CYCGRG	1 cut(s)	638
Eco91I	GGTNACC	1 cut(s)	760
EcoICRI	GAGCTC	1 cut(s)	635
EcoNI	CCTNNNNNAGG	1 cut(s)	744
EcoO109I	RGGNCCY	1 cut(s)	797
EcoO65I	GGTNACC	1 cut(s)	760
EcoRI	GAATTC	1 cut(s)	411
EcoRII	CCWGG	3 cut(s)	772, 793, 912
EcoT22I	ATGCAT	1 cut(s)	1082
EcoT38I	GRGCYC	2 cut(s)	336, 637
FalI	AAGNNNNNCTT	6 cut(s)	714, 746, 840, 872, 948, 980
FaqI	GGGAC	1 cut(s)	848
FauNDI	CATATG	1 cut(s)	522
FblI	GTMKAC	1 cut(s)	622
Fnu4HI	GCNGC	2 cut(s)	120, 272
FriOI	GRGCYC	2 cut(s)	336, 637
Fsp4HI	GCNGC	2 cut(s)	120, 272
FspBI	CTAG	3 cut(s)	276, 566, 860
FspI	TGCGCA	1 cut(s)	933
GlaI	GCGC	1 cut(s)	933
GluI	GCNGC	2 cut(s)	120, 272
HaeIII	GGCC	1 cut(s)	917
HapII	CCGG	3 cut(s)	176, 867, 1145
HhaI	GCGC	1 cut(s)	934
Hin6I	GCGC	1 cut(s)	932
HinP1I	GCGC	1 cut(s)	932
HindIII	AAGCTT	2 cut(s)	825, 926
HinfI	GANTC	3 cut(s)	643, 736, 947
HpaII	CCGG	3 cut(s)	176, 867, 1145
HphI	GGTGA	1 cut(s)	851
Hpy166II	GTNNAC	4 cut(s)	30, 623, 695, 901
Hpy188I	TCNGA	4 cut(s)	247, 342, 648, 809
Hpy188III	TCNNGA	7 cut(s)	88, 209, 229, 265, 500, 638, 1145
Hpy8I	GTNNAC	4 cut(s)	30, 623, 695, 901
Hpy99I	CGWCG	1 cut(s)	983
HpyAV	CCTTC	7 cut(s)	247, 427, 487, 620, 643, 870, 1129
HpyCH4III	ACNGT	2 cut(s)	372, 534
HpyCH4IV	ACGT	1 cut(s)	981
HpyCH4V	TGCA	7 cut(s)	399, 456, 573, 679, 889, 1015, 1080
HpyF10VI	GCNNNNNNNGC	2 cut(s)	268, 285
HpyF3I	CTNAG	3 cut(s)	24, 588, 1110
HpySE526I	ACGT	1 cut(s)	981
HspAI	GCGC	1 cut(s)	932
Kpn2I	TCCGGA	1 cut(s)	1144
Kzo9I	GATC	4 cut(s)	496, 502, 853, 1069
LmnI	GCTCC	3 cut(s)	339, 640, 727
Lsp1109I	GCAGC	2 cut(s)	106, 258
LweI	GCATC	4 cut(s)	106, 258, 443, 1067
MabI	ACCWGGT	1 cut(s)	793
MaeI	CTAG	3 cut(s)	276, 566, 860
MaeII	ACGT	1 cut(s)	981
MaeIII	GTNAC	3 cut(s)	712, 760, 839
MalI	GATC	4 cut(s)	498, 504, 855, 1071
MboI	GATC	4 cut(s)	496, 502, 853, 1069
MboII	GAAGA	9 cut(s)	27, 76, 162, 187, 462, 743, 848, 1042, 1045
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	2 cut(s)	336, 637
MnlI	CCTC	8 cut(s)	11, 45, 675, 750, 803, 810, 934, 1083
Mph1103I	ATGCAT	1 cut(s)	1082
MroI	TCCGGA	1 cut(s)	1144
MroXI	GAANNNNTTC	1 cut(s)	19
MseI	TTAA	8 cut(s)	95, 108, 158, 236, 350, 407, 474, 881
MslI	CAYNNNNRTG	1 cut(s)	684
MspI	CCGG	3 cut(s)	176, 867, 1145
MspR9I	CCNGG	5 cut(s)	177, 774, 795, 867, 914
MvaI	CCWGG	3 cut(s)	774, 795, 914
MvnI	CGCG	1 cut(s)	1028
MwoI	GCNNNNNNNGC	2 cut(s)	268, 285
NciI	CCSGG	2 cut(s)	177, 867
NdeI	CATATG	1 cut(s)	522
NdeII	GATC	4 cut(s)	496, 502, 853, 1069
NlaIV	GGNNCC	2 cut(s)	335, 1095
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	2 cut(s)	712, 839
NsbI	TGCGCA	1 cut(s)	933
NsiI	ATGCAT	1 cut(s)	1082
NspI	RCATGY	3 cut(s)	577, 907, 1049
PaeI	GCATGC	1 cut(s)	1049
PagI	TCATGA	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	917
PdmI	GAANNNNTTC	1 cut(s)	19
PfeI	GAWTC	3 cut(s)	643, 736, 947
PflFI	GACNNNGTC	1 cut(s)	941
PkrI	GCNGC	2 cut(s)	121, 273
PpuMI	RGGWCCY	1 cut(s)	797
Psp124BI	GAGCTC	1 cut(s)	637
Psp5II	RGGWCCY	1 cut(s)	797
Psp6I	CCWGG	3 cut(s)	772, 793, 912
PspEI	GGTNACC	1 cut(s)	760
PspGI	CCWGG	3 cut(s)	772, 793, 912
PspN4I	GGNNCC	2 cut(s)	335, 1095
PspPI	GGNCC	2 cut(s)	797, 1147
PspPPI	RGGWCCY	1 cut(s)	797
PstI	CTGCAG	1 cut(s)	1017
PsuI	RGATCY	1 cut(s)	496
PsyI	GACNNNGTC	1 cut(s)	941
RsaI	GTAC	5 cut(s)	128, 369, 787, 817, 871
RsaNI	GTAC	5 cut(s)	127, 368, 786, 816, 870
RseI	CAYNNNNRTG	1 cut(s)	684
SacI	GAGCTC	1 cut(s)	637
SaqAI	TTAA	8 cut(s)	95, 108, 158, 236, 350, 407, 474, 881
SatI	GCNGC	2 cut(s)	120, 272
Sau3AI	GATC	4 cut(s)	496, 502, 853, 1069
Sau96I	GGNCC	2 cut(s)	797, 1147
ScrFI	CCNGG	5 cut(s)	177, 774, 795, 867, 914
SduI	GDGCHC	2 cut(s)	336, 637
SexAI	ACCWGGT	1 cut(s)	793
SfaNI	GCATC	4 cut(s)	106, 258, 443, 1067
SfcI	CTRYAG	1 cut(s)	1013
SinI	GGWCC	2 cut(s)	797, 1147
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	3 cut(s)	263, 720, 1040
SmoI	CTYRAG	3 cut(s)	263, 720, 1040
SphI	GCATGC	1 cut(s)	1049
SseBI	AGGCCT	1 cut(s)	917
SsiI	CCGC	3 cut(s)	38, 789, 1063
SspMI	CTAG	3 cut(s)	276, 566, 860
SstI	GAGCTC	1 cut(s)	637
StuI	AGGCCT	1 cut(s)	917
StyD4I	CCNGG	5 cut(s)	175, 772, 793, 865, 912
TaaI	ACNGT	2 cut(s)	372, 534
TaiI	ACGT	1 cut(s)	984
TaqI	TCGA	4 cut(s)	501, 600, 945, 1075
TatI	WGTACW	2 cut(s)	126, 815
TfiI	GAWTC	3 cut(s)	643, 736, 947
Tru1I	TTAA	8 cut(s)	95, 108, 158, 236, 350, 407, 474, 881
Tru9I	TTAA	8 cut(s)	95, 108, 158, 236, 350, 407, 474, 881
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	2 cut(s)	712, 839
TseI	GCWGC	2 cut(s)	119, 271
Tsp45I	GTSAC	2 cut(s)	712, 839
TspDTI	ATGAA	5 cut(s)	318, 404, 429, 509, 1108
TspRI	CASTG	1 cut(s)	406
Tth111I	GACNNNGTC	1 cut(s)	941
VpaK11BI	GGWCC	2 cut(s)	797, 1147
XagI	CCTNNNNNAGG	1 cut(s)	744
XapI	RAATTY	5 cut(s)	91, 323, 411, 515, 971
XceI	RCATGY	3 cut(s)	577, 907, 1049
XmiI	GTMKAC	1 cut(s)	622
XmnI	GAANNNNTTC	1 cut(s)	19
XspI	CTAG	3 cut(s)	276, 566, 860
Zsp2I	ATGCAT	1 cut(s)	1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.