Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002499

Physical Location & Seq

Genomic Coordinates Reverse (-)

18342857 .. 18344395

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0208300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGATGCTTATGAGAAGGACTTTGAAGTAGTCATGCTAAAAGCTGTTGGAGAATACTATTCTCCTTTAGCATTGAGTTGGCTTTCTGAGGAATATTCTGATAGTGATTATATGTTGAAGGCTGAGGAATGCTTGAGGATAGAGAGAGAGAGGGCTACACATTACTTGCCTTCGATGAGGAGTCAGCAGAAGCTGGTGCAGAGAGTGCAACATGTGCTGTTTGAACCTCTTCTTAGTAAGTTTAAACAGAAAGTTACTACGGACTTGATTCAAGATGCTGCAGAAAAAAAGGCTTCTTCCGATGGAGCTTGCATGCTGGAACAGGTTTGGAAGGACGCTTTCATGGTATTTTTCAATAGATCTGTTGGTGAGAGCTCAAGTGCGGAACTACTTGCCAGATTCTGTGACAATCTCCTTAAAAGGGAAGAGAGTTTGATGAGTGAGCAGGAAATAGAAGAAACTCTTGAAAAGGTTGTCAGCACGCTGCTTCCTTATCTCAGTGACAAAGACCTCTTTGCAGAATTCTACAGGAAAAGACTTGCTCGTCGTCTCTTGTTTGATCGTCGTCTTAGCAAGGACCATGAGGTGAGAATTCTGACACAGATGAAAGAGCAATGTGGTGCACCTTTCACCTCAAAGATGGAAGGAATGGTCACAGATTTGACATTATCTGAGGACATTCAGATGAGGTTTCAGGAATATCTGCAGAGTAATCCAACTGTAAATCATCTGGAGATGGATTTGACAGTGACTGTTCTTACAACTGGTTTCTGGCCAAGTTTTAAATCATTTGATGTTAATATTCCTGCAGAGATGGTGAGATGTGCTGAAGTTTTCAAAGGATTCTATGAAACAAAAGCGAAGCACAGAAAGCTTACATGGGTTTACTCATTGGGCTCTTGCAACATTGTTGGGAAGTTTGAGCCAAAAAAAGTTGAATTGGTTGTATCGACCTATCAGGTTGCTCTACTTCTACTCTTCAATACTGCAGATAAACTGAGCTATTCAGAAATAGCAACTGGGTTAAACCTTGACCACGACGAGTTGGTTAGAATTCTTCATTCACTCTCATGTGCTCAGTACAAGATTCTTATCAAGAAGCCAGATACAAAGACTATCTCGCCGAATGACGACTTTGAGTTCAATTCCAAGTTCACACACAGAAGGAGAAAAATCAAGATTCCTCTCCCACGAGTGGTGGAAGAAAGGAAAAAAGTAATTAACCATGTTTGCCAAGACAGGAGATATGCTATTGATGCTGCAATCGTGCGAATTATGAAGAGCCGGAGAATTTTGGATCATCGACAATTGGTTGCAGACTGTGTTGAGCAGTTGAAACATATATTCAAGCCTGACATTAAAGCAATTAAGAAGCGTGTTGAAGATCTTATCACTCGTGACTACCTGGAGAGGGACAAGCAAGACTTTAACATGTTGAAGTATCTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

483

Amino Acids

56.56

Weight (kDa)

8.19

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin	PF00888	3 - 92	6e-11	Cullin alpha solenoid domain
Cullin	PF00888	105 - 227	1.2e-38	Cullin alpha solenoid domain
Cullin_AB	PF26557	252 - 385	7.3e-43	Cullin alpha+beta domain
Cullin_Nedd8	PF10557	413 - 475	5.6e-25	Cullin protein neddylation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10900 AT1G10900 AT1G10900 AT1G60890 AT1G60890
fragaria_vesca	FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440
malus_domestica	MD08G1229900.v1.1 MD08G1230300.v1.1 MD15G1423400.v1.1
prunus_persica	Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1
pyrus_communis	pycom08g20000 pycom08g20030 pycom15g37540
rosa_chinensis	RchiOBHm_Chr7g0222421
rosa_laevigata	RLG00000002062
rosa_multiflora	Rmu_sc0008769.1_g000006
rosa_roxburghii	Rroxscaffold_3G00236990
rosa_rugosa	Rorug07G0208300 Rorug07G0208400
rosa_samantha	Rh7CG368000 Rh7DG347200
rosa_wichuraiana	Rw7G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	543
AciI	CCGC	1 cut(s)	383
AclWI	GGATC	1 cut(s)	1305
AcoI	YGGCCR	1 cut(s)	773
AcsI	RAATTY	4 cut(s)	521, 591, 1053, 1290
AcuI	CTGAAG	1 cut(s)	849
AfaI	GTAC	1 cut(s)	1082
AfiI	CCNNNNNNNGG	3 cut(s)	421, 1195, 1411
AflIII	ACRYGT	2 cut(s)	211, 1431
AjnI	CCWGG	1 cut(s)	1404
AluBI	AGCT	6 cut(s)	44, 193, 308, 375, 874, 1002
AluI	AGCT	6 cut(s)	44, 193, 308, 375, 874, 1002
Alw21I	GWGCWC	3 cut(s)	377, 625, 1078
Alw26I	GTCTC	1 cut(s)	554
Alw44I	GTGCAC	1 cut(s)	621
AlwI	GGATC	1 cut(s)	1305
AlwNI	CAGNNNCTG	3 cut(s)	193, 402, 752
AoxI	GGCC	1 cut(s)	773
ApaLI	GTGCAC	1 cut(s)	621
ApeKI	GCWGC	3 cut(s)	278, 484, 1259
ApoI	RAATTY	4 cut(s)	521, 591, 1053, 1290
Asp700I	GAANNNNTTC	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	577
AsuHPI	GGTGA	4 cut(s)	380, 598, 622, 829
AvaII	GGWCC	1 cut(s)	577
BaeGI	GKGCMC	1 cut(s)	625
BalI	TGGCCA	1 cut(s)	775
BanII	GRGCYC	2 cut(s)	377, 899
BauI	CACGAG	2 cut(s)	1191, 1395
Bbv12I	GWGCWC	3 cut(s)	377, 625, 1078
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	265, 471, 1246
BccI	CCATC	4 cut(s)	296, 634, 730, 808
BciT130I	CCWGG	1 cut(s)	1406
BcoDI	GTCTC	1 cut(s)	554
BfmI	CTRYAG	5 cut(s)	279, 526, 704, 807, 987
BglII	AGATCT	2 cut(s)	359, 1384
BisI	GCNGC	3 cut(s)	279, 485, 1260
BlsI	GCNGC	3 cut(s)	280, 486, 1261
Bme1390I	CCNGG	1 cut(s)	1406
Bme18I	GGWCC	1 cut(s)	577
BmgT120I	GGNCC	1 cut(s)	577
BmrFI	CCNGG	1 cut(s)	1406
BmrI	ACTGGG	1 cut(s)	1029
BmsI	GCATC	2 cut(s)	265, 1246
BmuI	ACTGGG	1 cut(s)	1029
BpmI	CTGGAG	2 cut(s)	752, 1427
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	2 cut(s)	154, 361
BsaBI	GATNNNNATC	1 cut(s)	1091
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 1195, 1411
Bse1I	ACTGG	2 cut(s)	769, 1024
Bse3DI	GCAATG	1 cut(s)	620
Bse8I	GATNNNNATC	1 cut(s)	1091
BseBI	CCWGG	1 cut(s)	1406
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	1091
BseLI	CCNNNNNNNGG	3 cut(s)	421, 1195, 1411
BseMI	GCAATG	1 cut(s)	620
BseMII	CTCAG	6 cut(s)	78, 114, 511, 663, 989, 1091
BseNI	ACTGG	2 cut(s)	769, 1024
BseRI	GAGGAG	1 cut(s)	193
BseSI	GKGCMC	1 cut(s)	625
BseXI	GCAGC	3 cut(s)	265, 471, 1246
BsgI	GTGCAG	1 cut(s)	218
BshFI	GGCC	1 cut(s)	775
BsiHKAI	GWGCWC	3 cut(s)	377, 625, 1078
BsiSI	CCGG	1 cut(s)	1285
BslFI	GGGAC	1 cut(s)	1427
BslI	CCNNNNNNNGG	3 cut(s)	421, 1195, 1411
BsmAI	GTCTC	1 cut(s)	554
BsmBI	CGTCTC	1 cut(s)	554
BsmFI	GGGAC	1 cut(s)	1427
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	775
Bsp1286I	GDGCHC	4 cut(s)	377, 625, 899, 1078
Bsp143I	GATC	4 cut(s)	359, 559, 1297, 1384
BspACI	CCGC	1 cut(s)	383
BspANI	GGCC	1 cut(s)	775
BspCNI	CTCAG	6 cut(s)	79, 115, 510, 664, 990, 1090
BspMAI	CTGCAG	4 cut(s)	283, 708, 811, 991
BspPI	GGATC	1 cut(s)	1305
BspQI	GCTCTTC	1 cut(s)	1274
BsrDI	GCAATG	1 cut(s)	620
BsrI	ACTGG	2 cut(s)	769, 1024
BssMI	GATC	4 cut(s)	359, 559, 1297, 1384
BssSI	CACGAG	2 cut(s)	1191, 1395
Bst2BI	CACGAG	2 cut(s)	1191, 1395
Bst2UI	CCWGG	1 cut(s)	1406
Bst4CI	ACNGT	4 cut(s)	721, 748, 754, 1322
Bst6I	CTCTTC	4 cut(s)	234, 420, 983, 1274
BstAPI	GCANNNNNTGC	2 cut(s)	205, 214
BstC8I	GCNNGC	3 cut(s)	310, 314, 482
BstDEI	CTNAG	8 cut(s)	87, 123, 233, 497, 569, 672, 998, 1077
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	362, 562, 1300, 1387
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	4 cut(s)	359, 559, 1297, 1384
BstMWI	GCNNNNNNNGC	4 cut(s)	205, 214, 871, 1256
BstNI	CCWGG	1 cut(s)	1406
BstNSI	RCATGY	3 cut(s)	215, 316, 1435
BstSCI	CCNGG	1 cut(s)	1404
BstSFI	CTRYAG	5 cut(s)	279, 526, 704, 807, 987
BstSLI	GKGCMC	1 cut(s)	625
BstV1I	GCAGC	3 cut(s)	265, 471, 1246
BstX2I	RGATCY	2 cut(s)	359, 1384
BstYI	RGATCY	2 cut(s)	359, 1384
BsuRI	GGCC	1 cut(s)	775
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	505, 753
Cac8I	GCNNGC	3 cut(s)	310, 314, 482
CaiI	CAGNNNCTG	3 cut(s)	193, 402, 752
Cfr13I	GGNCC	1 cut(s)	577
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	1081
CviAII	CATG	9 cut(s)	34, 212, 313, 343, 581, 879, 1071, 1226, 1432
CviQI	GTAC	1 cut(s)	1081
DdeI	CTNAG	8 cut(s)	87, 123, 233, 497, 569, 672, 998, 1077
DpnI	GATC	4 cut(s)	361, 561, 1299, 1386
DpnII	GATC	4 cut(s)	359, 559, 1297, 1384
DraI	TTTAAA	2 cut(s)	244, 784
DrdI	GACNNNNNNGTC	1 cut(s)	543
DseDI	GACNNNNNNGTC	1 cut(s)	543
EaeI	YGGCCR	1 cut(s)	773
Eam1104I	CTCTTC	4 cut(s)	234, 420, 983, 1274
EarI	CTCTTC	4 cut(s)	234, 420, 983, 1274
Ecl136II	GAGCTC	1 cut(s)	375
Eco24I	GRGCYC	2 cut(s)	377, 899
Eco47I	GGWCC	1 cut(s)	577
Eco53kI	GAGCTC	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	849
EcoICRI	GAGCTC	1 cut(s)	375
EcoRI	GAATTC	3 cut(s)	521, 591, 1053
EcoRII	CCWGG	1 cut(s)	1404
EcoT38I	GRGCYC	2 cut(s)	377, 899
Esp3I	CGTCTC	1 cut(s)	554
FaeI	CATG	9 cut(s)	37, 215, 316, 346, 584, 882, 1074, 1229, 1435
FalI	AAGNNNNNCTT	4 cut(s)	447, 479, 1409, 1441
FaqI	GGGAC	1 cut(s)	1427
FatI	CATG	9 cut(s)	33, 211, 312, 342, 580, 878, 1070, 1225, 1431
Fnu4HI	GCNGC	3 cut(s)	279, 485, 1260
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	377, 899
Fsp4HI	GCNGC	3 cut(s)	279, 485, 1260
GluI	GCNGC	3 cut(s)	279, 485, 1260
GsuI	CTGGAG	2 cut(s)	752, 1427
HaeIII	GGCC	1 cut(s)	775
HapII	CCGG	1 cut(s)	1285
HgaI	GACGC	1 cut(s)	344
Hin1II	CATG	9 cut(s)	37, 215, 316, 346, 584, 882, 1074, 1229, 1435
HindIII	AAGCTT	1 cut(s)	872
HinfI	GANTC	6 cut(s)	181, 268, 399, 843, 1087, 1180
HpaII	CCGG	1 cut(s)	1285
HphI	GGTGA	4 cut(s)	380, 598, 622, 829
Hpy166II	GTNNAC	3 cut(s)	623, 886, 1155
Hpy188I	TCNGA	7 cut(s)	88, 100, 301, 597, 673, 684, 1009
Hpy188III	TCNNGA	7 cut(s)	272, 464, 695, 731, 1096, 1177, 1397
Hpy8I	GTNNAC	3 cut(s)	623, 886, 1155
Hpy99I	CGWCG	3 cut(s)	549, 567, 1043
HpyAV	CCTTC	6 cut(s)	10, 112, 180, 325, 638, 1158
HpyCH4III	ACNGT	4 cut(s)	721, 748, 754, 1322
HpyF10VI	GCNNNNNNNGC	4 cut(s)	205, 214, 871, 1256
HpyF3I	CTNAG	8 cut(s)	87, 123, 233, 497, 569, 672, 998, 1077
Hsp92II	CATG	9 cut(s)	37, 215, 316, 346, 584, 882, 1074, 1229, 1435
Kzo9I	GATC	4 cut(s)	359, 559, 1297, 1384
LguI	GCTCTTC	1 cut(s)	1274
LmnI	GCTCC	1 cut(s)	305
Lsp1109I	GCAGC	3 cut(s)	265, 471, 1246
LweI	GCATC	2 cut(s)	265, 1246
MaeIII	GTNAC	6 cut(s)	253, 404, 500, 652, 748, 1397
MalI	GATC	4 cut(s)	361, 561, 1299, 1386
MboI	GATC	4 cut(s)	359, 559, 1297, 1384
MboII	GAAGA	9 cut(s)	221, 288, 437, 467, 970, 1049, 1214, 1291, 1394
MfeI	CAATTG	1 cut(s)	1307
MflI	RGATCY	2 cut(s)	359, 1384
MhlI	GDGCHC	4 cut(s)	377, 625, 899, 1078
MlsI	TGGCCA	1 cut(s)	775
MluNI	TGGCCA	1 cut(s)	775
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	2 cut(s)	28, 740
Mox20I	TGGCCA	1 cut(s)	775
MroXI	GAANNNNTTC	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	775
MseI	TTAA	9 cut(s)	243, 417, 783, 798, 1025, 1221, 1359, 1368, 1428
MslI	CAYNNNNRTG	2 cut(s)	683, 1069
Msp20I	TGGCCA	1 cut(s)	775
MspI	CCGG	1 cut(s)	1285
MspR9I	CCNGG	1 cut(s)	1406
MssI	GTTTAAAC	1 cut(s)	244
MunI	CAATTG	1 cut(s)	1307
Mva1269I	GAATGC	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	1406
MwoI	GCNNNNNNNGC	4 cut(s)	205, 214, 871, 1256
NdeII	GATC	4 cut(s)	359, 559, 1297, 1384
NlaIII	CATG	9 cut(s)	37, 215, 316, 346, 584, 882, 1074, 1229, 1435
NmuCI	GTSAC	5 cut(s)	404, 500, 652, 748, 1397
NspI	RCATGY	3 cut(s)	215, 316, 1435
PaeI	GCATGC	1 cut(s)	316
PciI	ACATGT	2 cut(s)	211, 1431
PciSI	GCTCTTC	1 cut(s)	1274
PctI	GAATGC	1 cut(s)	134
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	5 cut(s)	268, 399, 843, 1087, 1180
PkrI	GCNGC	3 cut(s)	280, 486, 1261
PleI	GAGTC	1 cut(s)	189
PmeI	GTTTAAAC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	189
PscI	ACATGT	2 cut(s)	211, 1431
Psp124BI	GAGCTC	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	1404
PspGI	CCWGG	1 cut(s)	1404
PspPI	GGNCC	1 cut(s)	577
PstI	CTGCAG	4 cut(s)	283, 708, 811, 991
PstNI	CAGNNNCTG	3 cut(s)	193, 402, 752
PsuI	RGATCY	2 cut(s)	359, 1384
RsaI	GTAC	1 cut(s)	1082
RsaNI	GTAC	1 cut(s)	1081
RseI	CAYNNNNRTG	2 cut(s)	683, 1069
SacI	GAGCTC	1 cut(s)	377
SapI	GCTCTTC	1 cut(s)	1274
SaqAI	TTAA	9 cut(s)	243, 417, 783, 798, 1025, 1221, 1359, 1368, 1428
SatI	GCNGC	3 cut(s)	279, 485, 1260
Sau3AI	GATC	4 cut(s)	359, 559, 1297, 1384
Sau96I	GGNCC	1 cut(s)	577
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	1406
SduI	GDGCHC	4 cut(s)	377, 625, 899, 1078
SfaNI	GCATC	2 cut(s)	265, 1246
SfcI	CTRYAG	5 cut(s)	279, 526, 704, 807, 987
SinI	GGWCC	1 cut(s)	577
SmiMI	CAYNNNNRTG	2 cut(s)	683, 1069
SmlI	CTYRAG	2 cut(s)	133, 376
SmoI	CTYRAG	2 cut(s)	133, 376
SphI	GCATGC	1 cut(s)	316
SsiI	CCGC	1 cut(s)	383
SspI	AATATT	2 cut(s)	95, 802
SstI	GAGCTC	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	1404
TaaI	ACNGT	4 cut(s)	721, 748, 754, 1322
TaqI	TCGA	3 cut(s)	173, 950, 1303
TatI	WGTACW	1 cut(s)	1080
TfiI	GAWTC	5 cut(s)	268, 399, 843, 1087, 1180
Tru1I	TTAA	9 cut(s)	243, 417, 783, 798, 1025, 1221, 1359, 1368, 1428
Tru9I	TTAA	9 cut(s)	243, 417, 783, 798, 1025, 1221, 1359, 1368, 1428
TscAI	CASTG	2 cut(s)	505, 753
TseFI	GTSAC	5 cut(s)	404, 500, 652, 748, 1397
TseI	GCWGC	3 cut(s)	278, 484, 1259
Tsp45I	GTSAC	5 cut(s)	404, 500, 652, 748, 1397
TspDTI	ATGAA	5 cut(s)	331, 620, 864, 1049, 1292
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	2 cut(s)	505, 753
VneI	GTGCAC	1 cut(s)	621
VpaK11BI	GGWCC	1 cut(s)	577
XapI	RAATTY	4 cut(s)	521, 591, 1053, 1290
XceI	RCATGY	3 cut(s)	215, 316, 1435
XmnI	GAANNNNTTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.