Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002499

Physical Location & Seq

Genomic Coordinates Reverse (-)

18347102 .. 18347851

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0208400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAAACGTAAGCAATGCCCTGATATTCCTGTCTCTTCGTTCGAGACTAATGATGATATCCAGTTTGACGAAGGATGGGAAATTATTATGAAGGGGATAACAAAGCTGAAAAAGATGATTGCCGAAGGATCAGAGCCTTTGCTCACAGCAGAAGAATTTATAAAGTTGTACACAGTTGTCTATAACATGTGTATACAACGATCTGATCATTTTCAACCGCTCTATGACAAATTTAAGGAAACATGTGAAGATTTTTACAGAGTGACTGTAGAATACAATAGTTCAATGGATCAATCTGAAGAGTTTATTTTGCGGGATCTTGTTAAGAGATGGGGATGTTTTAAAGTTATGGGTTATTGGCTGCCACGCATCTTTCAGTATTTTGATCGCCATGGCAGGCGACTTTCTAAGCTAAATGAAGTACTTGGAGTTTACAACTTTGGTGATTTGGTTTATCGGAAGGTGAGTTCTTATGCCACAGACGCTATAATTCGTCTTTTTGATAAAGAGCGAAAGGGAGAGGAGATTGATAGAGAACTAGTGAAGAATACGATAAATGTATTTGTGGAAATTGGAATATTGAGATGTCACGCCCCGAATTTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

202

Amino Acids

24.05

Weight (kDa)

5.77

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cullin	PF00888	48 - 192	3.4e-22	Cullin alpha solenoid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10900 AT1G10900 AT1G10900 AT1G60890 AT1G60890
fragaria_vesca	FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440 FvH4_5g29440
malus_domestica	MD08G1229900.v1.1 MD08G1230300.v1.1 MD15G1423400.v1.1
prunus_persica	Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1 Prupe.1G569300_v2.0.a1
pyrus_communis	pycom08g20000 pycom08g20030 pycom15g37540
rosa_chinensis	RchiOBHm_Chr7g0222421
rosa_laevigata	RLG00000002062
rosa_multiflora	Rmu_sc0008769.1_g000006
rosa_roxburghii	Rroxscaffold_3G00236990
rosa_rugosa	Rorug07G0208300 Rorug07G0208400
rosa_samantha	Rh7CG368000 Rh7DG347200
rosa_wichuraiana	Rw7G029590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	161
AccBSI	CCGCTC	1 cut(s)	220
AccI	GTMKAC	1 cut(s)	193
AciI	CCGC	2 cut(s)	218, 313
AclWI	GGATC	3 cut(s)	136, 297, 324
AcsI	RAATTY	3 cut(s)	155, 230, 598
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	2 cut(s)	170, 423
AflIII	ACRYGT	2 cut(s)	186, 242
AgsI	TTSAA	3 cut(s)	215, 285, 605
AhlI	ACTAGT	1 cut(s)	538
AloI	GAACNNNNNNTCC	2 cut(s)	451, 483
AluBI	AGCT	2 cut(s)	106, 412
AluI	AGCT	2 cut(s)	106, 412
Alw26I	GTCTC	2 cut(s)	37, 38
AlwI	GGATC	3 cut(s)	136, 297, 324
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	3 cut(s)	155, 230, 598
AsuHPI	GGTGA	2 cut(s)	455, 475
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	2 cut(s)	69, 324
BclI	TGATCA	1 cut(s)	205
BcoDI	GTCTC	2 cut(s)	37, 38
BcuI	ACTAGT	1 cut(s)	538
BfaI	CTAG	1 cut(s)	539
BfmI	CTRYAG	1 cut(s)	267
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
BmcAI	AGTACT	1 cut(s)	423
BmsI	GCATC	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	2 cut(s)	80, 341
BseMI	GCAATG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	1 cut(s)	348
BsmAI	GTCTC	2 cut(s)	37, 38
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	6 cut(s)	128, 200, 205, 289, 316, 385
Bsp19I	CCATGG	1 cut(s)	391
BspACI	CCGC	2 cut(s)	218, 313
BspPI	GGATC	3 cut(s)	136, 297, 324
BsrBI	CCGCTC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	20
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	6 cut(s)	128, 200, 205, 289, 316, 385
BssNAI	GTATAC	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	391
Bst1107I	GTATAC	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	175, 268
Bst6I	CTCTTC	2 cut(s)	40, 294
BstAUI	TGTACA	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	398
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	391
BstF5I	GGATG	2 cut(s)	80, 341
BstKTI	GATC	6 cut(s)	131, 203, 208, 292, 319, 388
BstMAI	GTCTC	2 cut(s)	37, 38
BstMBI	GATC	6 cut(s)	128, 200, 205, 289, 316, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNSI	RCATGY	2 cut(s)	190, 246
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BstZ17I	GTATAC	1 cut(s)	194
BtgI	CCRYGG	1 cut(s)	391
BtsCI	GGATG	2 cut(s)	80, 341
Cac8I	GCNNGC	1 cut(s)	398
CseI	GACGC	1 cut(s)	491
Csp6I	GTAC	2 cut(s)	169, 422
CviAII	CATG	3 cut(s)	187, 243, 392
CviJI	RGCY	4 cut(s)	106, 136, 361, 412
CviKI_1	RGCY	4 cut(s)	106, 136, 361, 412
CviQI	GTAC	2 cut(s)	169, 422
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	6 cut(s)	130, 202, 207, 291, 318, 387
DpnII	GATC	6 cut(s)	128, 200, 205, 289, 316, 385
DraI	TTTAAA	1 cut(s)	343
Eam1104I	CTCTTC	2 cut(s)	40, 294
EarI	CTCTTC	2 cut(s)	40, 294
Eco130I	CCWWGG	1 cut(s)	391
Eco32I	GATATC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	318
EcoRV	GATATC	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	3 cut(s)	190, 246, 395
FatI	CATG	3 cut(s)	186, 242, 391
FauI	CCCGC	1 cut(s)	306
FbaI	TGATCA	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	2 cut(s)	87, 348
Fsp4HI	GCNGC	1 cut(s)	362
FspBI	CTAG	1 cut(s)	539
GluI	GCNGC	1 cut(s)	362
HgaI	GACGC	1 cut(s)	491
Hin1II	CATG	3 cut(s)	190, 246, 395
HphI	GGTGA	2 cut(s)	455, 475
Hpy166II	GTNNAC	3 cut(s)	171, 194, 433
Hpy188I	TCNGA	4 cut(s)	133, 205, 298, 459
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	3 cut(s)	171, 194, 433
HpyAV	CCTTC	4 cut(s)	65, 85, 119, 454
HpyCH4III	ACNGT	2 cut(s)	175, 268
HpyCH4IV	ACGT	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	3 cut(s)	190, 246, 395
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	6 cut(s)	128, 200, 205, 289, 316, 385
LpnPI	CCDG	4 cut(s)	33, 42, 74, 382
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	1 cut(s)	539
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	2 cut(s)	262, 587
MalI	GATC	6 cut(s)	130, 202, 207, 291, 318, 387
MbiI	CCGCTC	1 cut(s)	220
MboI	GATC	6 cut(s)	128, 200, 205, 289, 316, 385
MboII	GAAGA	5 cut(s)	27, 164, 260, 311, 556
MflI	RGATCY	1 cut(s)	316
MluCI	AATT	6 cut(s)	81, 155, 230, 489, 570, 598
MnlI	CCTC	1 cut(s)	514
MseI	TTAA	3 cut(s)	234, 324, 342
MwoI	GCNNNNNNNGC	1 cut(s)	482
NcoI	CCATGG	1 cut(s)	391
NdeII	GATC	6 cut(s)	128, 200, 205, 289, 316, 385
NlaIII	CATG	3 cut(s)	190, 246, 395
NmuCI	GTSAC	2 cut(s)	262, 587
NspI	RCATGY	2 cut(s)	190, 246
PciI	ACATGT	2 cut(s)	186, 242
PkrI	GCNGC	1 cut(s)	363
PscI	ACATGT	2 cut(s)	186, 242
PsiI	TTATAA	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	316
RsaI	GTAC	2 cut(s)	170, 423
RsaNI	GTAC	2 cut(s)	169, 422
SaqAI	TTAA	3 cut(s)	234, 324, 342
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	6 cut(s)	128, 200, 205, 289, 316, 385
ScaI	AGTACT	1 cut(s)	423
SetI	ASST	4 cut(s)	10, 108, 414, 465
SfaNI	GCATC	1 cut(s)	378
SfcI	CTRYAG	1 cut(s)	267
SpeI	ACTAGT	1 cut(s)	538
Sse9I	AATT	6 cut(s)	81, 155, 230, 489, 570, 598
SsiI	CCGC	2 cut(s)	218, 313
SspI	AATATT	1 cut(s)	579
SspMI	CTAG	1 cut(s)	539
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	2 cut(s)	175, 268
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	1 cut(s)	42
TasI	AATT	6 cut(s)	81, 155, 230, 489, 570, 598
TatI	WGTACW	2 cut(s)	168, 421
Tru1I	TTAA	3 cut(s)	234, 324, 342
Tru9I	TTAA	3 cut(s)	234, 324, 342
TseFI	GTSAC	2 cut(s)	262, 587
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	2 cut(s)	262, 587
TspDTI	ATGAA	3 cut(s)	17, 104, 432
XapI	RAATTY	3 cut(s)	155, 230, 598
XceI	RCATGY	2 cut(s)	190, 246
XmiI	GTMKAC	1 cut(s)	193
XspI	CTAG	1 cut(s)	539
ZrmI	AGTACT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.