Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010830

Physical Location & Seq

Genomic Coordinates Forward (+)

38876766 .. 38884458

Gene Structure 7693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3738 bp

ATGGACGTCCTCAGTCTCAAAGTGTCTTCCTCAGCAGCTTTTTCAAATGATAACCTCCGAATCCCACCACTTTCAAAGTCAGCAGCAGCAGGAGGAGGAGGCCTTAGACGCAGACTTGCAGCAGCAGCAGAAGCAGGCATTGGGAATGCAGGCAAAGCTCTTAAACCAGAGTCTAGATCAATAGTGAAAGAGAAGAGCGTGTCGGTGATTCTTTTGGCTGGAGGGCAGGGCAAAAGGATGGGTGCCAGCATGCCAAAGCAATATCTTCCCCTTTTAGGCCAGCCAATTGCATTATACAGCTTCTACACTTTCTCCCAAATGATTGAAGTAAAGGAAATAATTGTAGTTTGTGATCCCTCCTACAAGGATGTTTTTGAAGGTTATAATCCTCGCTCTCTAGCCCTCCTTGTAAATGCATTGCCTCTTGGCTTGGACATGCTTTATATATTCGATGCAGTGATGCAGGAGACATTTAAACTAATTTGGTTGGTCATGTTCTCAGACGCCAAACATAAGATCAAGAAGGAACTTAAATTCACACTACCAGGGAAGGAAAGACAAGATTCGGTTTACAGTGGACTCCAGGCAATTGATTTGACCTCGGAGCTTGTTTGTATCCATGATTCTGCTAGACCTCTGGTATCATCAGGAGATGTAGCGAAGGTTCTCAAAGATGGTTGCTTAAATGGTGCAGCCGTACTTGGTGTTCCAGTAAAAGCTACAATCAAAGAGGCAAACAGTGAGTCTTTTGTAGTCAAAACCCTTGACAGGAGAACACTTTGGGAAATGCAGACACCCCAGGTCATCAAACCTCAGTTGCTCAGAGAGGGTTTTGAGCTTGTCAATAGAGAAGGGCTTGAAGTGACTGACGACGTGTCTATTGTTGAGCACCTTAAGTATCCCGTGTACATCAGTGAAGGATCTTATACCAACATCAAGGTGACAACGCCGGATGATTTATTACTTGCGGAAAGAATACTGAGTATGAACTCAGGAAAGTCTTCTCCTGAATATGAACTTGCCATCGCCAGACTACTCCGTCCTCAGCCGAACCAAATGATCTGCTACTTCGCGCGCAGGTCCCTCCACGTGTCCCGAACACCCCACTGGAAGCTCCGGGACGAGTACAAGCTCACCCGCCCCCAGTTACACGACCGCATATCCCGCCTCCTCCTCCTCCAGCGCTACGACGCCCTTCACCAGCTCTCCTTTGACTTCTCCGACCGCCTCCTCAGCACCGTCCTCCGCCAACTGAAGCTCAACCCTGCCGCCTGCTTAGCCTTTTTCAAATTGGCTTCCAAGCAGCACAAGTTCAGGCCCAACCTCAAGTCTTACTGTATGATTGTTCATATCTTGTCCAGAGCTCGAATGCACGACCAAACCAGAGCGTATTTGAACGAATTGGTCCGTCTCTGCAGCAACCATTGTTCAGCATTCGTGGTCTGGGATGAGCTTGTTCGCGTTTACAGGGAATTTACGTTTTCGCCAACGGTTTTTGATATGGTTCTCAAGGTGTTTGCTGAGAAGGGCATGACCAAGTATGCACTTCATGTGTTTGATAATATGGGTAAGTGCGGTCGAGTTCCTAGTCTGAGGTCTTGTAATTCATTGTTGAGTAATTTGGTCAGAAACGGTGAACGTTTCAATGCATTGCTTGTTTATGAGCAGATAAATAGGTTGGGGATTGTTCCCGATGTTTATACCTGTTCGATAATGGTGAATGCGTATTGTAAGGAAGGGAGGCTCAGTAGAGCGGCGGAGTTTGTCAAAGAGATGGAAAGTTTGGGTTTTGAATTAAATGTGGTGACTTATAATAGTCTGATTAATGGGTACATCAGTTCGGGAGATGTTGAAGGAGCCCGATTGGTGTTGGGGTTGATGTCTGAGAAAGGAATTGAGAGAAATGTAGTGAGTTATACACTGTTGATTAAGGGTTACTGCAAGCGGTGTAAGATGGAGGAAGCGGAGAAGGTGCTTCGAGGTATGAAGGAGGAGGGGGACAAGTTTGTGGTTGTGGATGAACGTGCTTATGGCGTCTTGTTAGATGGGTATTGTAAAGCTGGCAGAATGGATGATGCTATTAGGATTCGGGATGAGATGTTGACCATGGGTTTAAGTATGAATATTTTCATTTGTAACTCCTTGATCAATGGGTACTGCAAGGTTGGTCAAGTTTGTGACGCGGAGGGAGTGTTGTTGCGGATGAGATATTGGAACTTAAACCCTGATTCTTATAGTTATAATACCCTTATGGATGGGTATTGTAAGAAAGGTCAGACAAGTGATGCATTGAAGCTTTTTGATGAGATGCTTCAGGAAGGAATCCATCACACTGTTATAACTTACAATACGCTTCTCAAGGGTTTATGTCAAGCGGGTGCTTTTGATGATGCCTTGCATCTTTGGCATCTAATGTTGAAAAAAGGGTTGGCTCCTGATGAGGTTAGCTATTGTTCTCTGCTTGATGTGGTTTTGAAGAAGGAAGATCTTGATGGGGCTATAACTCTGTGGAAAGATATTCTAGCAAAGGGTTTTACCAAAAGTAAGTTTGCTTTCAATACAATGATTAATGGGTTATGCAAGATGGGAAAAATGGTTGAAGCAGGAGAGTTTTTCGAAAAGATGAAGGGGCTAGGATGTTTACCTGATGAGATGACTTATAGAACCCTGAGTGATGGGTACTGTAAAATTGGGAACGTTGAAGAAGCTTTCAAAGTTAAGAGTTTGATGGAAGGGCAAGCAATACTTCCTTCCATTGAAATGTACAATTCTCTCATCAATGGTGTCTTTATGTCCAGGAAATTAAGTAAAGTGAATGGTCTTCTTGCTGAGATGCAGACAAGGGGATTAACCCCGGATATTGTTACATATGGAGCCCTGATCACTGGTTGGTGCAATGAAGGGATGCTGGATAAAGCTTTGAGTTCATATTTTGAGATGATTGACAAAGGGTTCACCACCAATTTAATTATTTGCAGCAAAGTTGTCAGTACTCTGTATAGGCTTGGTAGGATTGATGAAGGAAATAGTCTGTTGCAGAAGCTATTGGATTTTGATTTTTTTTCAGATCAGCAATGTTTTTCGAAGCTTTGCAAAGTTGGTAGTAGAAATCAAGAAATTCAAAAATTTGCAGATTCTCTTGATGAAAGTGCTGAAAGTTTCTCTCTGACCAACCCGGTTGTATACAATATTGCTATCTTGGGGCTCTGCAGATCAGGGAAAGTTGCTGATGCAAGGAGATTAATATCGTCGTTATTGCTCAATGGTATTTCTCCAGACAATTTTACATATTGCACCCTAATCAATGCCACTGCTGCTGCTGGTAATGTGACTGAGGCTTTCAACTTACGAGATGAAATGCTGAAGAGGGATCTTGTTCCTAACATTACCACATATAATGCTCTTATAAATGGCTTGTCCAAATCGGGAAATTTGGATAGAGCACAGAGGCTTTTCCGTAAACTTTACCGAAAGAAGTTAGTTCCTAATGATGTTACCTACAATATAATGATTGGTGGATACTGCAGAATTGGAAATACTGTGGAAGCGTTTAAATTTTGGAACGAGATGATTCGACAAGGGATTGCTCCCTCTGTTATCACTTACTCTGCATTGATCAATGGTCTTTATAAGCAAGGAAATTTGGAAGAATCTGTGAAGCTTTTGAGTCAACTGATCAAGGTGGGAGTGCAGCATAACCTTGTTAATTACATACTCCAGTTTGGTTCAAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046490 GO:0050518 GO:0070567 GO:0071704 GO:0090407 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

IspD

Protein Analysis

1246

Amino Acids

139.62

Weight (kDa)

8.8

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IspD	PF01128	67 - 125	2.8e-07	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
NTP_transf_3	PF12804	69 - 138	4.4e-07	MobA-like NTP transferase domain
IspD	PF01128	178 - 328	3.2e-41	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
PPR_2	PF13041	530 - 578	6.7e-08	PPR repeat family
PPR_3	PF13812	553 - 611	1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	561 - 593	5.6e-09	PPR repeat
PPR	PF01535	567 - 597	8.8e-06	PPR repeat
PPR_2	PF13041	571 - 611	7.2e-10	PPR repeat family
PPR_long	PF17177	577 - 712	5e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	589 - 648	2.7e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	600 - 648	8.8e-14	PPR repeat family
PPR	PF01535	602 - 632	2.8e-06	PPR repeat
PPR_1	PF12854	630 - 663	1.5e-08	PPR repeat
PPR_2	PF13041	634 - 666	2.2e-07	PPR repeat family
PPR	PF01535	637 - 666	3.1e-07	PPR repeat
PPR_1	PF12854	671 - 700	1.1e-07	PPR repeat
PPR_2	PF13041	675 - 709	5.1e-06	PPR repeat family
PPR	PF01535	676 - 705	4e-06	PPR repeat
PPR_3	PF13812	695 - 754	1e-05	Pentatricopeptide repeat domain
PPR_2	PF13041	708 - 752	5.7e-11	PPR repeat family
PPR_1	PF12854	739 - 770	3.6e-12	PPR repeat
PPR_2	PF13041	742 - 791	9.3e-19	PPR repeat family
PPR	PF01535	745 - 775	2.5e-10	PPR repeat
PPR_long	PF17177	751 - 902	3.8e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	765 - 824	1.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	774 - 805	1e-07	PPR repeat
PPR_2	PF13041	778 - 823	2.3e-13	PPR repeat family
PPR	PF01535	780 - 810	1.5e-06	PPR repeat
PPR_1	PF12854	848 - 876	8.6e-08	PPR repeat
PPR_2	PF13041	850 - 896	6.8e-15	PPR repeat family
PPR	PF01535	851 - 880	7e-08	PPR repeat
PPR_1	PF12854	879 - 911	9.4e-10	PPR repeat
PPR_2	PF13041	917 - 966	4.3e-10	PPR repeat family
PPR_1	PF12854	948 - 974	1.5e-07	PPR repeat
PPR_2	PF13041	952 - 988	4.8e-06	PPR repeat family
PPR_2	PF13041	1058 - 1104	4.1e-10	PPR repeat family
PPR_long	PF17177	1075 - 1170	1e-05	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	1088 - 1120	2.2e-07	PPR repeat
PPR_3	PF13812	1088 - 1137	9.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	1099 - 1141	6.5e-10	PPR repeat family
PPR_3	PF13812	1116 - 1174	1.6e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	1124 - 1154	7.9e-09	PPR repeat
PPR_2	PF13041	1127 - 1176	5.6e-16	PPR repeat family
PPR_1	PF12854	1159 - 1190	2.2e-11	PPR repeat
PPR_2	PF13041	1162 - 1211	4.3e-18	PPR repeat family
PPR	PF01535	1165 - 1195	4.3e-09	PPR repeat
PPR_1	PF12854	1194 - 1224	3.9e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19290 AT1G19290
fragaria_vesca	FvH4_2g40380 FvH4_2g40380
malus_domestica	MD15G1444300.v1.1
prunus_persica	Prupe.1G585600_v2.0.a1
pyrus_communis	pycom15g39140
rosa_chinensis	RchiOBHm_Chr3g0486911 RchiOBHm_Chr6g0300361
rosa_laevigata	RLG00000011344
rosa_multiflora	Rmu_sc0001670.1_g000017
rosa_roxburghii	Rroxscaffold_2G00128300 Rroxscaffold_7G00167860
rosa_rugosa	Rorug06G0295300
rosa_samantha	Rh3AG278100 Rh6AG408100 Rh6BG415400 Rh6CG422800 Rh6DG408400
rosa_wichuraiana	Rw6G035690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	6 cut(s)	384, 1812, 2241, 2339, 3407, 3630
AasI	GACNNNNNNGTC	1 cut(s)	1038
AatII	GACGTC	1 cut(s)	9
Acc36I	ACCTGC	1 cut(s)	1068
AccB1I	GGYRCC	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	1754
AccI	GTMKAC	1 cut(s)	3183
AccII	CGCG	4 cut(s)	1073, 1075, 1461, 2183
AclI	AACGTT	2 cut(s)	1639, 2697
AclWI	GGATC	3 cut(s)	347, 928, 3378
AcsI	RAATTY	7 cut(s)	533, 1472, 3117, 3125, 3430, 3554, 3640
AcuI	CTGAAG	3 cut(s)	1274, 2297, 3383
AcvI	CACGTG	1 cut(s)	1090
AcyI	GRCGYC	4 cut(s)	6, 504, 1191, 2034
AfaI	GTAC	8 cut(s)	699, 908, 1127, 1832, 2156, 2681, 2765, 2992
AfeI	AGCGCT	1 cut(s)	1184
AfiI	CCNNNNNNNGG	2 cut(s)	275, 768
AflII	CTTAAG	1 cut(s)	893
AflIII	ACRYGT	2 cut(s)	873, 1089
AhdI	GACNNNNNGTC	1 cut(s)	874
AjiI	CACGTC	1 cut(s)	874
AjnI	CCWGG	4 cut(s)	544, 582, 798, 2795
AjuI	GAANNNNNNNTTGG	4 cut(s)	123, 155, 2411, 2443
Alw21I	GWGCWC	3 cut(s)	891, 1366, 3445
Alw26I	GTCTC	3 cut(s)	20, 461, 1415
AlwI	GGATC	3 cut(s)	347, 928, 3378
Aor51HI	AGCGCT	1 cut(s)	1184
AoxI	GGCC	3 cut(s)	100, 277, 1316
ApoI	RAATTY	7 cut(s)	533, 1472, 3117, 3125, 3430, 3554, 3640
ArsI	GACNNNNNNTTYG	2 cut(s)	728, 760
AseI	ATTAAT	3 cut(s)	1824, 2568, 3242
Asp700I	GAANNNNTTC	2 cut(s)	1000, 2126
AspLEI	GCGC	3 cut(s)	1075, 1077, 1185
AspS9I	GGNCC	3 cut(s)	1080, 1317, 1405
AsuC2I	CCSGG	3 cut(s)	1118, 2855, 3176
AsuHPI	GGTGA	8 cut(s)	217, 952, 1126, 1190, 1646, 1729, 1816, 2947
AsuII	TTCGAA	2 cut(s)	2616, 3083
AvaII	GGWCC	2 cut(s)	1080, 1405
BaeI	ACNNNNGTAYC	2 cut(s)	1822, 1855
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	4 cut(s)	1366, 1861, 2878, 3207
BbrPI	CACGTG	1 cut(s)	1090
BbsI	GAAGAC	3 cut(s)	18, 993, 2813
Bbv12I	GWGCWC	3 cut(s)	891, 1366, 3445
BbvCI	CCTCAGC	3 cut(s)	31, 1044, 1232
BceAI	ACGGC	1 cut(s)	680
BciT130I	CCWGG	4 cut(s)	546, 584, 800, 2797
BciVI	GTATCC	3 cut(s)	626, 909, 3512
BclI	TGATCA	4 cut(s)	2145, 2880, 3615, 3675
BcnI	CCSGG	3 cut(s)	1118, 2855, 3176
BcoDI	GTCTC	3 cut(s)	20, 461, 1415
BfaI	CTAG	6 cut(s)	174, 398, 630, 1587, 2522, 2633
BfmI	CTRYAG	3 cut(s)	1414, 3208, 3523
BfoI	RGCGCY	1 cut(s)	1186
BfrI	CTTAAG	1 cut(s)	893
BfuAI	ACCTGC	1 cut(s)	1068
BfuI	GTATCC	3 cut(s)	626, 909, 3512
BglII	AGATCT	1 cut(s)	2485
BlpI	GCTNAGC	1 cut(s)	1276
BmcAI	AGTACT	1 cut(s)	2992
Bme1390I	CCNGG	7 cut(s)	546, 584, 800, 1118, 2797, 2855, 3176
Bme18I	GGWCC	2 cut(s)	1080, 1405
BmeRI	GACNNNNNGTC	1 cut(s)	874
BmgBI	CACGTC	1 cut(s)	874
BmgT120I	GGNCC	3 cut(s)	1080, 1317, 1405
BmiI	GGNNCC	5 cut(s)	244, 1082, 1858, 2433, 2875
BmrFI	CCNGG	7 cut(s)	546, 584, 800, 1118, 2797, 2855, 3176
BmrI	ACTGGG	1 cut(s)	1138
BmuI	ACTGGG	1 cut(s)	1138
BpiI	GAAGAC	3 cut(s)	18, 993, 2813
BpmI	CTGGAG	5 cut(s)	240, 566, 1163, 3258, 3701
Bpu10I	CCTNAGC	3 cut(s)	31, 1044, 1232
Bpu1102I	GCTNAGC	1 cut(s)	1276
Bpu14I	TTCGAA	2 cut(s)	2616, 3083
BpuEI	CTTGAG	3 cut(s)	1310, 1493, 2342
BpuMI	CCSGG	3 cut(s)	1118, 2855, 3176
BsaAI	YACGTR	1 cut(s)	1090
BsaBI	GATNNNNATC	1 cut(s)	3244
BsaHI	GRCGYC	4 cut(s)	6, 504, 1191, 2034
BsaJI	CCNNGG	5 cut(s)	545, 600, 798, 2106, 2853
BsaXI	ACNNNNNCTCC	8 cut(s)	296, 326, 1190, 1220, 1732, 1762, 2177, 2207
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 768
Bse1I	ACTGG	5 cut(s)	710, 1112, 1144, 2890, 3718
Bse3DI	GCAATG	4 cut(s)	416, 1649, 2902, 3080
Bse8I	GATNNNNATC	1 cut(s)	3244
BseBI	CCWGG	4 cut(s)	546, 584, 800, 2797
BseDI	CCNNGG	5 cut(s)	545, 600, 798, 2106, 2853
BseJI	GATNNNNATC	1 cut(s)	3244
BseLI	CCNNNNNNNGG	2 cut(s)	275, 768
BseMI	GCAATG	4 cut(s)	416, 1649, 2902, 3080
BseNI	ACTGG	5 cut(s)	710, 1112, 1144, 2890, 3718
BsePI	GCGCGC	1 cut(s)	1073
BseRI	GAGGAG	7 cut(s)	108, 111, 1160, 1163, 1166, 1220, 2006
BsgI	GTGCAG	2 cut(s)	711, 3710
Bsh1236I	CGCG	4 cut(s)	1073, 1075, 1461, 2183
Bsh1285I	CGRYCG	3 cut(s)	1156, 1225, 1579
BshFI	GGCC	3 cut(s)	102, 279, 1318
BshNI	GGYRCC	1 cut(s)	242
BsiEI	CGRYCG	3 cut(s)	1156, 1225, 1579
BsiHKAI	GWGCWC	3 cut(s)	891, 1366, 3445
BsiSI	CCGG	4 cut(s)	950, 1117, 2855, 3176
BslFI	GGGAC	4 cut(s)	1066, 1078, 1133, 2012
BslI	CCNNNNNNNGG	2 cut(s)	275, 768
BsmAI	GTCTC	3 cut(s)	20, 461, 1415
BsmBI	CGTCTC	1 cut(s)	1415
BsmFI	GGGAC	4 cut(s)	1066, 1078, 1133, 2012
BsmI	GAATGC	4 cut(s)	151, 1374, 1433, 1726
BsnI	GGCC	3 cut(s)	102, 279, 1318
Bsp119I	TTCGAA	2 cut(s)	2616, 3083
Bsp1286I	GDGCHC	6 cut(s)	891, 1366, 1861, 2878, 3207, 3445
Bsp1407I	TGTACA	2 cut(s)	906, 2763
Bsp1720I	GCTNAGC	1 cut(s)	1276
Bsp19I	CCATGG	1 cut(s)	2106
BspANI	GGCC	3 cut(s)	102, 279, 1318
BspFNI	CGCG	4 cut(s)	1073, 1075, 1461, 2183
BspLI	GGNNCC	5 cut(s)	244, 1082, 1858, 2433, 2875
BspMAI	CTGCAG	3 cut(s)	1418, 3212, 3527
BspMI	ACCTGC	1 cut(s)	1068
BspPI	GGATC	3 cut(s)	347, 928, 3378
BspQI	GCTCTTC	1 cut(s)	188
BspT104I	TTCGAA	2 cut(s)	2616, 3083
BspT107I	GGYRCC	1 cut(s)	242
BspTI	CTTAAG	1 cut(s)	893
BsrBI	CCGCTC	1 cut(s)	1754
BsrDI	GCAATG	4 cut(s)	416, 1649, 2902, 3080
BsrGI	TGTACA	2 cut(s)	906, 2763
BsrI	ACTGG	5 cut(s)	710, 1112, 1144, 2890, 3718
BssECI	CCNNGG	5 cut(s)	545, 600, 798, 2106, 2853
BssHII	GCGCGC	1 cut(s)	1073
BssNAI	GTATAC	1 cut(s)	3184
BssNI	GRCGYC	4 cut(s)	6, 504, 1191, 2034
BssT1I	CCWWGG	1 cut(s)	2106
Bst1107I	GTATAC	1 cut(s)	3184
Bst2UI	CCWGG	4 cut(s)	546, 584, 800, 2797
Bst6I	CTCTTC	2 cut(s)	188, 3359
BstACI	GRCGYC	4 cut(s)	6, 504, 1191, 2034
BstAFI	CTTAAG	1 cut(s)	893
BstAUI	TGTACA	2 cut(s)	906, 2763
BstBAI	YACGTR	1 cut(s)	1090
BstBI	TTCGAA	2 cut(s)	2616, 3083
BstDSI	CCRYGG	1 cut(s)	2106
BstFNI	CGCG	4 cut(s)	1073, 1075, 1461, 2183
BstH2I	RGCGCY	1 cut(s)	1186
BstHHI	GCGC	3 cut(s)	1075, 1077, 1185
BstMAI	GTCTC	3 cut(s)	20, 461, 1415
BstMCI	CGRYCG	3 cut(s)	1156, 1225, 1579
BstMWI	GCNNNNNNNGC	9 cut(s)	108, 125, 131, 155, 1164, 1233, 1277, 2404, 3314
BstNI	CCWGG	4 cut(s)	546, 584, 800, 2797
BstNSI	RCATGY	2 cut(s)	253, 439
BstSCI	CCNGG	7 cut(s)	544, 582, 798, 1116, 2795, 2853, 3174
BstSFI	CTRYAG	3 cut(s)	1414, 3208, 3523
BstUI	CGCG	4 cut(s)	1073, 1075, 1461, 2183
BstV2I	GAAGAC	3 cut(s)	18, 993, 2813
BstX2I	RGATCY	3 cut(s)	920, 2485, 3370
BstYI	RGATCY	3 cut(s)	920, 2485, 3370
BstZ17I	GTATAC	1 cut(s)	3184
BsuI	GTATCC	3 cut(s)	626, 909, 3512
BsuRI	GGCC	3 cut(s)	102, 279, 1318
BtgI	CCRYGG	1 cut(s)	2106
BtgZI	GCGATG	1 cut(s)	1009
BtrI	CACGTC	1 cut(s)	874
BtsI	GCAGTG	2 cut(s)	462, 3309
BtsIMutI	CAGTG	9 cut(s)	462, 580, 745, 919, 1105, 1919, 2331, 2883, 3309
BveI	ACCTGC	1 cut(s)	1068
CfoI	GCGC	3 cut(s)	1075, 1077, 1185
Cfr13I	GGNCC	3 cut(s)	1080, 1317, 1405
CseI	GACGC	5 cut(s)	117, 512, 1199, 2023, 2189
Csp6I	GTAC	8 cut(s)	698, 907, 1126, 1831, 2155, 2680, 2764, 2991
CviAII	CATG	7 cut(s)	250, 436, 493, 620, 1531, 1550, 2107
CviQI	GTAC	8 cut(s)	698, 907, 1126, 1831, 2155, 2680, 2764, 2991
DraI	TTTAAA	2 cut(s)	475, 3553
DrdI	GACNNNNNNGTC	1 cut(s)	1038
DriI	GACNNNNNGTC	1 cut(s)	874
DseDI	GACNNNNNNGTC	1 cut(s)	1038
Eam1104I	CTCTTC	2 cut(s)	188, 3359
Eam1105I	GACNNNNNGTC	1 cut(s)	874
EarI	CTCTTC	2 cut(s)	188, 3359
EciI	GGCGGA	2 cut(s)	1235, 1772
Ecl136II	GAGCTC	1 cut(s)	1364
Eco130I	CCWWGG	1 cut(s)	2106
Eco147I	AGGCCT	1 cut(s)	102
Eco24I	GRGCYC	4 cut(s)	1366, 1861, 2878, 3207
Eco47I	GGWCC	2 cut(s)	1080, 1405
Eco47III	AGCGCT	1 cut(s)	1184
Eco53kI	GAGCTC	1 cut(s)	1364
Eco57I	CTGAAG	3 cut(s)	1274, 2297, 3383
Eco72I	CACGTG	1 cut(s)	1090
EcoICRI	GAGCTC	1 cut(s)	1364
EcoO109I	RGGNCCY	1 cut(s)	1080
EcoRII	CCWGG	4 cut(s)	544, 582, 798, 2795
EcoT14I	CCWWGG	1 cut(s)	2106
EcoT22I	ATGCAT	3 cut(s)	418, 1651, 2290
EcoT38I	GRGCYC	4 cut(s)	1366, 1861, 2878, 3207
ErhI	CCWWGG	1 cut(s)	2106
Esp3I	CGTCTC	1 cut(s)	1415
FaeI	CATG	7 cut(s)	253, 439, 496, 623, 1534, 1553, 2110
FalI	AAGNNNNNCTT	2 cut(s)	2730, 2762
FaqI	GGGAC	4 cut(s)	1066, 1078, 1133, 2012
FatI	CATG	7 cut(s)	249, 435, 492, 619, 1530, 1549, 2106
FauI	CCCGC	3 cut(s)	1145, 1172, 2368
FauNDI	CATATG	1 cut(s)	2869
FbaI	TGATCA	4 cut(s)	2145, 2880, 3615, 3675
FblI	GTMKAC	1 cut(s)	3183
FriOI	GRGCYC	4 cut(s)	1366, 1861, 2878, 3207
FspBI	CTAG	6 cut(s)	174, 398, 630, 1587, 2522, 2633
GlaI	GCGC	3 cut(s)	1074, 1076, 1184
GsuI	CTGGAG	5 cut(s)	240, 566, 1163, 3258, 3701
HaeII	RGCGCY	1 cut(s)	1186
HaeIII	GGCC	3 cut(s)	102, 279, 1318
HapII	CCGG	4 cut(s)	950, 1117, 2855, 3176
HgaI	GACGC	5 cut(s)	117, 512, 1199, 2023, 2189
HhaI	GCGC	3 cut(s)	1075, 1077, 1185
Hin1I	GRCGYC	4 cut(s)	6, 504, 1191, 2034
Hin1II	CATG	7 cut(s)	253, 439, 496, 623, 1534, 1553, 2110
Hin6I	GCGC	3 cut(s)	1073, 1075, 1183
HinP1I	GCGC	3 cut(s)	1073, 1075, 1183
HincII	GTYRAC	2 cut(s)	2103, 3671
HindII	GTYRAC	2 cut(s)	2103, 3671
HindIII	AAGCTT	5 cut(s)	2294, 2706, 2916, 3086, 3659
HpaII	CCGG	4 cut(s)	950, 1117, 2855, 3176
HphI	GGTGA	8 cut(s)	217, 952, 1126, 1190, 1646, 1729, 1816, 2947
Hpy99I	CGWCG	3 cut(s)	875, 1193, 3253
HpyCH4IV	ACGT	7 cut(s)	6, 873, 1089, 1478, 1639, 2023, 2697
HpyF10VI	GCNNNNNNNGC	9 cut(s)	108, 125, 131, 155, 1164, 1233, 1277, 2404, 3314
HpySE526I	ACGT	7 cut(s)	6, 873, 1089, 1478, 1639, 2023, 2697
Hsp92I	GRCGYC	4 cut(s)	6, 504, 1191, 2034
Hsp92II	CATG	7 cut(s)	253, 439, 496, 623, 1534, 1553, 2110
HspAI	GCGC	3 cut(s)	1073, 1075, 1183
Ksp22I	TGATCA	4 cut(s)	2145, 2880, 3615, 3675
LguI	GCTCTTC	1 cut(s)	188
LmnI	GCTCC	6 cut(s)	604, 1119, 1856, 2437, 2873, 3592
MaeI	CTAG	6 cut(s)	174, 398, 630, 1587, 2522, 2633
MaeII	ACGT	7 cut(s)	6, 873, 1089, 1478, 1639, 2023, 2697
MbiI	CCGCTC	1 cut(s)	1754
MfeI	CAATTG	2 cut(s)	285, 588
MflI	RGATCY	3 cut(s)	920, 2485, 3370
MhlI	GDGCHC	6 cut(s)	891, 1366, 1861, 2878, 3207, 3445
MlyI	GAGTC	4 cut(s)	179, 573, 752, 3676
MmeI	TCCRAC	1 cut(s)	1245
Mph1103I	ATGCAT	3 cut(s)	418, 1651, 2290
MroXI	GAANNNNTTC	2 cut(s)	1000, 2126
MslI	CAYNNNNRTG	2 cut(s)	938, 2759
MspCI	CTTAAG	1 cut(s)	893
MspI	CCGG	4 cut(s)	950, 1117, 2855, 3176
MspR9I	CCNGG	7 cut(s)	546, 584, 800, 1118, 2797, 2855, 3176
MunI	CAATTG	2 cut(s)	285, 588
Mva1269I	GAATGC	4 cut(s)	151, 1374, 1433, 1726
MvaI	CCWGG	4 cut(s)	546, 584, 800, 2797
MvnI	CGCG	4 cut(s)	1073, 1075, 1461, 2183
MwoI	GCNNNNNNNGC	9 cut(s)	108, 125, 131, 155, 1164, 1233, 1277, 2404, 3314
NciI	CCSGG	3 cut(s)	1118, 2855, 3176
NcoI	CCATGG	1 cut(s)	2106
NdeI	CATATG	1 cut(s)	2869
NlaIII	CATG	7 cut(s)	253, 439, 496, 623, 1534, 1553, 2110
NlaIV	GGNNCC	5 cut(s)	244, 1082, 1858, 2433, 2875
NmuCI	GTSAC	5 cut(s)	862, 940, 1804, 2177, 3328
NsiI	ATGCAT	3 cut(s)	418, 1651, 2290
NspI	RCATGY	2 cut(s)	253, 439
NspV	TTCGAA	2 cut(s)	2616, 3083
PaeI	GCATGC	1 cut(s)	253
PauI	GCGCGC	1 cut(s)	1073
PceI	AGGCCT	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	188
PctI	GAATGC	4 cut(s)	151, 1374, 1433, 1726
PdmI	GAANNNNTTC	2 cut(s)	1000, 2126
PfoI	TCCNGGA	2 cut(s)	1116, 2795
PleI	GAGTC	4 cut(s)	178, 573, 751, 3675
PmaCI	CACGTG	1 cut(s)	1090
PmlI	CACGTG	1 cut(s)	1090
PpsI	GAGTC	4 cut(s)	178, 573, 751, 3675
Ppu21I	YACGTR	1 cut(s)	1090
PpuMI	RGGWCCY	1 cut(s)	1080
PshBI	ATTAAT	3 cut(s)	1824, 2568, 3242
PsiI	TTATAA	6 cut(s)	384, 1812, 2241, 2339, 3407, 3630
Psp124BI	GAGCTC	1 cut(s)	1366
Psp1406I	AACGTT	2 cut(s)	1639, 2697
Psp5II	RGGWCCY	1 cut(s)	1080
Psp6I	CCWGG	4 cut(s)	544, 582, 798, 2795
PspCI	CACGTG	1 cut(s)	1090
PspGI	CCWGG	4 cut(s)	544, 582, 798, 2795
PspN4I	GGNNCC	5 cut(s)	244, 1082, 1858, 2433, 2875
PspPI	GGNCC	3 cut(s)	1080, 1317, 1405
PspPPI	RGGWCCY	1 cut(s)	1080
PsrI	GAACNNNNNNTAC	4 cut(s)	648, 680, 690, 722
PstI	CTGCAG	3 cut(s)	1418, 3212, 3527
PsuI	RGATCY	3 cut(s)	920, 2485, 3370
PteI	GCGCGC	1 cut(s)	1073
RsaI	GTAC	8 cut(s)	699, 908, 1127, 1832, 2156, 2681, 2765, 2992
RsaNI	GTAC	8 cut(s)	698, 907, 1126, 1831, 2155, 2680, 2764, 2991
RseI	CAYNNNNRTG	2 cut(s)	938, 2759
SacI	GAGCTC	1 cut(s)	1366
SapI	GCTCTTC	1 cut(s)	188
Sau96I	GGNCC	3 cut(s)	1080, 1317, 1405
ScaI	AGTACT	1 cut(s)	2992
SchI	GAGTC	4 cut(s)	179, 573, 752, 3676
ScrFI	CCNGG	7 cut(s)	546, 584, 800, 1118, 2797, 2855, 3176
SduI	GDGCHC	6 cut(s)	891, 1366, 1861, 2878, 3207, 3445
SfcI	CTRYAG	3 cut(s)	1414, 3208, 3523
SfuI	TTCGAA	2 cut(s)	2616, 3083
SinI	GGWCC	2 cut(s)	1080, 1405
SmiMI	CAYNNNNRTG	2 cut(s)	938, 2759
SmlI	CTYRAG	4 cut(s)	893, 1325, 1508, 2357
SmoI	CTYRAG	4 cut(s)	893, 1325, 1508, 2357
SphI	GCATGC	1 cut(s)	253
SseBI	AGGCCT	1 cut(s)	102
SspI	AATATT	2 cut(s)	2125, 3190
SspMI	CTAG	6 cut(s)	174, 398, 630, 1587, 2522, 2633
SstI	GAGCTC	1 cut(s)	1366
StuI	AGGCCT	1 cut(s)	102
StyD4I	CCNGG	7 cut(s)	544, 582, 798, 1116, 2795, 2853, 3174
StyI	CCWWGG	1 cut(s)	2106
TaiI	ACGT	7 cut(s)	9, 876, 1092, 1481, 1642, 2026, 2700
TaqI	TCGA	8 cut(s)	450, 1366, 1579, 1709, 1978, 2616, 3083, 3574
TatI	WGTACW	4 cut(s)	906, 1125, 2763, 2990
TauI	GCSGC	2 cut(s)	1271, 1757
TscAI	CASTG	9 cut(s)	462, 580, 745, 919, 1112, 1926, 2338, 2890, 3316
TseFI	GTSAC	5 cut(s)	862, 940, 1804, 2177, 3328
Tsp45I	GTSAC	5 cut(s)	862, 940, 1804, 2177, 3328
TspGWI	ACGGA	3 cut(s)	1028, 1397, 3446
TspRI	CASTG	9 cut(s)	462, 580, 745, 919, 1112, 1926, 2338, 2890, 3316
Vha464I	CTTAAG	1 cut(s)	893
VpaK11BI	GGWCC	2 cut(s)	1080, 1405
VspI	ATTAAT	3 cut(s)	1824, 2568, 3242
XapI	RAATTY	7 cut(s)	533, 1472, 3117, 3125, 3430, 3554, 3640
XbaI	TCTAGA	1 cut(s)	173
XceI	RCATGY	2 cut(s)	253, 439
XmiI	GTMKAC	1 cut(s)	3183
XmnI	GAANNNNTTC	2 cut(s)	1000, 2126
XspI	CTAG	6 cut(s)	174, 398, 630, 1587, 2522, 2633
ZraI	GACGTC	1 cut(s)	7
ZrmI	AGTACT	1 cut(s)	2992
Zsp2I	ATGCAT	3 cut(s)	418, 1651, 2290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.