Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005971

Physical Location & Seq

Genomic Coordinates Reverse (-)

38891462 .. 38892031

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAAGGTGGTTCTAATTTCATTTGGCTTTGAAACTTGCAGGAAGAGGCTTTTTCAGATGATAAATGATCTCCCCACCATATTTGAAGTTGTGACAGGAAATGCTAAGCAACCAAAAGACCAGTCTACTCCTCCCAACAACAGTAGCAAGAACAGATCCAGTGGAAAGGTGTCTCGGCAGTCTGAGCCCCTGCAGAGCAAAGGAGTGAAAATGTCTCCGCTGCCCAAAGAGGAGGATGAAAGCGGGGAAGAAGAAGAAGATGATGAACAAGGTGCGACTTGCGGGGCATGTGGAGACAATTATGGGGCTGATGAGTTCTGGATTTGCTGTGATGTGTGCGAAAGATGGTTCCATGGAAAATGTGTAAAGATTACACCCGCAAAGGCTGAGCATATCAAGCAGTACAAGTGCCCAAGTTGCAGTAGCAAGAGGGCTAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006417 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0033554 GO:0034248 GO:0034250 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

148

Amino Acids

16.43

Weight (kDa)

6.72

Isoelectric Point (pI)

74.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	94 - 140	8.9e-10	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14510 AT2G02470 AT2G02470
fragaria_vesca	FvH4_5g27363 FvH4_5g27363
malus_domestica	MD08G1249900.v1.1 MD15G1444600.v1.1
prunus_persica	Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1 Prupe.1G587000_v2.0.a1
pyrus_communis	pycom08g21630 pycom15g39160
rosa_chinensis	RchiOBHm_Chr7g0218621
rosa_laevigata	RLG00000002330
rosa_multiflora	Rmu_sc0001301.1_g000021
rosa_roxburghii	Rroxscaffold_3G00240730
rosa_rugosa	Rorug07G0179000 Rorug07G0179000
rosa_samantha	Rh7CG336900
rosa_wichuraiana	Rw7G027260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	125
AciI	CCGC	4 cut(s)	218, 243, 282, 378
AclWI	GGATC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	404
AgsI	TTSAA	2 cut(s)	32, 86
Alw26I	GTCTC	3 cut(s)	177, 219, 288
AlwI	GGATC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	220
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
BaeGI	GKGCMC	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	1 cut(s)	339
BcoDI	GTCTC	3 cut(s)	177, 219, 288
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	1 cut(s)	191
BisI	GCNGC	1 cut(s)	221
BlpI	GCTNAGC	2 cut(s)	105, 387
BlsI	GCNGC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	350
Bpu1102I	GCTNAGC	2 cut(s)	105, 387
BsaJI	CCNNGG	1 cut(s)	352
Bse1I	ACTGG	2 cut(s)	121, 159
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	1 cut(s)	241
BseMII	CTCAG	2 cut(s)	174, 378
BseNI	ACTGG	2 cut(s)	121, 159
BseRI	GAGGAG	2 cut(s)	120, 245
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	1 cut(s)	207
BsmAI	GTCTC	3 cut(s)	177, 219, 288
Bsp1286I	GDGCHC	2 cut(s)	189, 413
Bsp143I	GATC	2 cut(s)	67, 155
Bsp1720I	GCTNAGC	2 cut(s)	105, 387
Bsp19I	CCATGG	1 cut(s)	352
BspACI	CCGC	4 cut(s)	218, 243, 282, 378
BspCNI	CTCAG	2 cut(s)	175, 379
BspLI	GGNNCC	1 cut(s)	350
BspMAI	CTGCAG	1 cut(s)	195
BspPI	GGATC	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	121, 159
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	2 cut(s)	67, 155
BssT1I	CCWWGG	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	38
BstDEI	CTNAG	3 cut(s)	105, 183, 387
BstDSI	CCRYGG	1 cut(s)	352
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	2 cut(s)	70, 158
BstMAI	GTCTC	3 cut(s)	177, 219, 288
BstMBI	GATC	2 cut(s)	67, 155
BstMWI	GCNNNNNNNGC	3 cut(s)	184, 397, 417
BstNSI	RCATGY	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	191
BstSLI	GKGCMC	1 cut(s)	413
BstV1I	GCAGC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	403
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	2 cut(s)	288, 353
CviJI	RGCY	6 cut(s)	27, 49, 187, 308, 386, 434
CviKI_1	RGCY	6 cut(s)	27, 49, 187, 308, 386, 434
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	3 cut(s)	105, 183, 387
DpnI	GATC	2 cut(s)	69, 157
DpnII	GATC	2 cut(s)	67, 155
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	2 cut(s)	291, 356
FaiI	YATR	5 cut(s)	80, 289, 303, 354, 393
FatI	CATG	2 cut(s)	287, 352
FauI	CCCGC	3 cut(s)	236, 275, 385
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	221
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	291, 356
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	2 cut(s)	57, 184
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	1 cut(s)	126
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	3 cut(s)	39, 193, 420
HpyF10VI	GCNNNNNNNGC	3 cut(s)	184, 397, 417
HpyF3I	CTNAG	3 cut(s)	105, 183, 387
Hsp92II	CATG	2 cut(s)	291, 356
Kzo9I	GATC	2 cut(s)	67, 155
LpnPI	CCDG	6 cut(s)	25, 81, 134, 172, 203, 304
Lsp1109I	GCAGC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	2 cut(s)	69, 157
MboI	GATC	2 cut(s)	67, 155
MboII	GAAGA	5 cut(s)	55, 260, 263, 266, 269
MflI	RGATCY	1 cut(s)	155
MhlI	GDGCHC	2 cut(s)	189, 413
MluCI	AATT	2 cut(s)	15, 298
MnlI	CCTC	5 cut(s)	39, 141, 223, 226, 423
MseI	TTAA	1 cut(s)	442
MspA1I	CMGCKG	1 cut(s)	220
MwoI	GCNNNNNNNGC	3 cut(s)	184, 397, 417
NcoI	CCATGG	1 cut(s)	352
NdeII	GATC	2 cut(s)	67, 155
NlaIII	CATG	2 cut(s)	291, 356
NlaIV	GGNNCC	1 cut(s)	350
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	91
NspI	RCATGY	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	195
PsuI	RGATCY	1 cut(s)	155
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	1 cut(s)	442
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	2 cut(s)	67, 155
SduI	GDGCHC	2 cut(s)	189, 413
SetI	ASST	3 cut(s)	9, 171, 274
SfcI	CTRYAG	1 cut(s)	191
Sse9I	AATT	2 cut(s)	15, 298
SsiI	CCGC	4 cut(s)	218, 243, 282, 378
SspMI	CTAG	1 cut(s)	435
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	1 cut(s)	143
TasI	AATT	2 cut(s)	15, 298
TatI	WGTACW	1 cut(s)	402
Tru1I	TTAA	1 cut(s)	442
Tru9I	TTAA	1 cut(s)	442
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	4 cut(s)	9, 17, 252, 279
TspRI	CASTG	1 cut(s)	166
XceI	RCATGY	1 cut(s)	291
XmiI	GTMKAC	1 cut(s)	125
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.