pycom16g00020

Prolyl endopeptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011215
Physical Location & Seq
Forward (+)
13249 .. 15223
1975 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1050 bp
ATGGGAATGGGAATGAGAATGCATAAGCAGTGGCAGTGGCAGTGGCGCAGAGGAAACCTACTTCCGCTTGTCTACCTTCCAGTAGTCGTATTGTCGTCGTGTGGTGGTGGCGCCGGTTCCTCTCTAGGTTTCTCCGTCCGAGCGTCCACGTCATCAGAACCCACATCAAGAGTGAGGATGAGTGAGAGTAAGATGCAGCGGCCTCCGGTGGCGAAGAAGGTGGAGCATAAGATGGAGATGTTCGGCGACGTCAGAGTGGACAACTACTATTGGCTCCGCGACGACTCTCGCTCCGACCCCCAAGTCCTCTCTTACCTTCAACAAGAAAACGATTACACTCAATTCCTCATGTCTGGAAATAAGAAATTCGAAGATCAACTCTACTCTGAGATTAGGGGAAGGATCAAGGAGGATGATATATCTGCACCTGAACGAAAAGGCCCCTACTATTACTATCAAAGGACTCTCAAAGGTATGGAGTACGTTCAGCATTGTCGCCGCTTTATACCCAAAACCAAAAGCAGCGAGGGTGATGCGGACCCCCCAGTATCTGTGTATGATACCATGCCCACCGGACCTGATGCTCCTCCGGAGCATGTAATCTTGGATGAGAATGTTATGGCTAAAAATCATGCCTATTATAGCATTGCTGCTTTTAAGGTTAGCCCAAACAACAATTTGGTGGCATATGCAGAAGACACCAAAGGAAATGAAATCTATACAGTTTATGTCATTGATGCCGAGACAGGTGCTCCTGTGGGTCTGCCTCTTGTTGGTACAACATCCTATCTTGAATGGGCCGGCAACGAGGCATTAGTTTACATTACAATGGACGAGACCCTCCGCCCTGACAAGGCATGGTTACATAAGTTGGGGACAGAACAGTCAAGTGACTCCTGCCTCTATCATGAACAGGATGATATGTTTTCAATTGATCTTCACGCTTCTGAGAGCAAAAAGTTCTTGTTTGTTGCATCCGAAAGTAAAACTACAAGATTCAACTTTTACATGATGATCATTCAAAGCCTGAAGATGGGCTTATGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05142 ko05143 map05142 map05143
Pfam Domains
Protein Families
Peptidase_S9 Peptidase_S9_N

Protein Analysis

350

Amino Acids

39.95

Weight (kDa)

5.82

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S9_N PF02897 68 - 336 1.2e-73 Prolyl oligopeptidase, N-terminal beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G50380 AT1G50380
fragaria_vesca FvH4_4g37301
malus_domestica MD16G1004600.v1.1
prunus_persica Prupe.1G351000_v2.0.a1 Prupe.1G351200_v2.0.a1 Prupe.1G351200_v2.0.a1
pyrus_communis pycom16g00020 pycom16g00030
rosa_chinensis RchiOBHm_Chr4g0447131 RchiOBHm_Chr5g0037361
rosa_laevigata RLG00000005602
rosa_multiflora Rmu_ssc0000178.1_g000010
rosa_roxburghii Rroxscaffold_5G00387470
rosa_rugosa Rorug04G0378500
rosa_samantha Rh4AG439600 Rh4BG448700 Rh4CG465700 Rh4DG447100
rosa_wichuraiana Rw4G037610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 302, 883
AatII GACGTC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 110
AccI GTMKAC 1 cut(s) 72
AccII CGCG 1 cut(s) 279
AccIII TCCGGA 1 cut(s) 589
AciI CCGC 6 cut(s) 65, 199, 277, 499, 536, 844
AclWI GGATC 1 cut(s) 410
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 1049
AcyI GRCGYC 2 cut(s) 111, 249
AfaI GTAC 2 cut(s) 482, 778
AfiI CCNNNNNNNGG 3 cut(s) 773, 853, 1033
AgsI TTSAA 5 cut(s) 320, 794, 930, 1000, 1022
AjiI CACGTC 1 cut(s) 150
Alw21I GWGCWC 1 cut(s) 754
Alw26I GTCTC 2 cut(s) 737, 830
AlwI GGATC 1 cut(s) 410
AlwNI CAGNNNCTG 1 cut(s) 551
Aor13HI TCCGGA 1 cut(s) 589
AoxI GGCC 3 cut(s) 200, 439, 798
ApeKI GCWGC 3 cut(s) 196, 522, 650
ApoI RAATTY 1 cut(s) 365
AspLEI GCGC 2 cut(s) 48, 113
AspS9I GGNCC 4 cut(s) 440, 538, 575, 798
AsuHPI GGTGA 1 cut(s) 542
AsuII TTCGAA 1 cut(s) 369
AvaII GGWCC 2 cut(s) 538, 575
BanI GGYRCC 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 702
Bbv12I GWGCWC 1 cut(s) 754
BbvI GCAGC 3 cut(s) 208, 534, 637
BccI CCATC 2 cut(s) 226, 1027
BcgI CGANNNNNNTGC 4 cut(s) 515, 549, 731, 765
BclI TGATCA 1 cut(s) 1014
BcoDI GTCTC 2 cut(s) 737, 830
BfaI CTAG 1 cut(s) 125
BfoI RGCGCY 1 cut(s) 114
BisI GCNGC 5 cut(s) 197, 200, 499, 523, 651
BlsI GCNGC 5 cut(s) 198, 201, 500, 524, 652
Bme18I GGWCC 2 cut(s) 538, 575
BmgBI CACGTC 1 cut(s) 150
BmgT120I GGNCC 4 cut(s) 440, 538, 575, 798
BmiI GGNNCC 5 cut(s) 112, 118, 275, 442, 540
BmrI ACTGGG 1 cut(s) 539
BmsI GCATC 5 cut(s) 183, 523, 571, 727, 983
BmuI ACTGGG 1 cut(s) 539
BpiI GAAGAC 1 cut(s) 702
Bpu14I TTCGAA 1 cut(s) 369
BsaHI GRCGYC 2 cut(s) 111, 249
BsaI GGTCTC 1 cut(s) 830
BsaWI WCCGGW 3 cut(s) 205, 572, 589
BsaXI ACNNNNNCTCC 4 cut(s) 275, 305, 736, 766
Bsc4I CCNNNNNNNGG 3 cut(s) 773, 853, 1033
Bse118I RCCGGY 2 cut(s) 113, 800
Bse1I ACTGG 2 cut(s) 80, 545
Bse3DI GCAATG 1 cut(s) 645
BseAI TCCGGA 1 cut(s) 589
BseGI GGATG 6 cut(s) 183, 418, 613, 782, 922, 974
BseLI CCNNNNNNNGG 3 cut(s) 773, 853, 1033
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 2 cut(s) 378, 939
BseNI ACTGG 2 cut(s) 80, 545
BseRI GAGGAG 1 cut(s) 576
BseXI GCAGC 3 cut(s) 208, 534, 637
BsgI GTGCAG 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 279
BshFI GGCC 3 cut(s) 202, 441, 800
BshNI GGYRCC 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 754
BsiSI CCGG 5 cut(s) 114, 206, 573, 590, 801
BslFI GGGAC 1 cut(s) 889
BslI CCNNNNNNNGG 3 cut(s) 773, 853, 1033
BsmAI GTCTC 2 cut(s) 737, 830
BsmFI GGGAC 1 cut(s) 889
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 3 cut(s) 202, 441, 800
Bso31I GGTCTC 1 cut(s) 830
Bsp119I TTCGAA 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 754
Bsp13I TCCGGA 1 cut(s) 589
Bsp143I GATC 4 cut(s) 373, 402, 934, 1014
BspACI CCGC 6 cut(s) 65, 199, 277, 499, 536, 844
BspANI GGCC 3 cut(s) 202, 441, 800
BspCNI CTCAG 2 cut(s) 379, 940
BspEI TCCGGA 1 cut(s) 589
BspFNI CGCG 1 cut(s) 279
BspHI TCATGA 1 cut(s) 907
BspLI GGNNCC 5 cut(s) 112, 118, 275, 442, 540
BspPI GGATC 1 cut(s) 410
BspT104I TTCGAA 1 cut(s) 369
BspT107I GGYRCC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 830
BsrDI GCAATG 1 cut(s) 645
BsrFI RCCGGY 2 cut(s) 113, 800
BsrI ACTGG 2 cut(s) 80, 545
BssAI RCCGGY 2 cut(s) 113, 800
BssMI GATC 4 cut(s) 373, 402, 934, 1014
BssNI GRCGYC 2 cut(s) 111, 249
Bst4CI ACNGT 2 cut(s) 724, 885
BstACI GRCGYC 2 cut(s) 111, 249
BstBI TTCGAA 1 cut(s) 369
BstC8I GCNNGC 1 cut(s) 802
BstDEI CTNAG 2 cut(s) 387, 948
BstF5I GGATG 6 cut(s) 183, 418, 613, 782, 922, 974
BstFNI CGCG 1 cut(s) 279
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 2 cut(s) 48, 113
BstKTI GATC 4 cut(s) 376, 405, 937, 1017
BstMAI GTCTC 2 cut(s) 737, 830
BstMBI GATC 4 cut(s) 373, 402, 934, 1014
BstNSI RCATGY 1 cut(s) 599
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 3 cut(s) 208, 534, 637
BstV2I GAAGAC 1 cut(s) 702
BsuRI GGCC 3 cut(s) 202, 441, 800
BtrI CACGTC 1 cut(s) 150
BtsCI GGATG 6 cut(s) 183, 418, 613, 782, 922, 974
BtsI GCAGTG 3 cut(s) 35, 41, 47
BtsIMutI CAGTG 3 cut(s) 35, 41, 47
Cac8I GCNNGC 1 cut(s) 802
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 1 cut(s) 907
CfoI GCGC 2 cut(s) 48, 113
Cfr10I RCCGGY 2 cut(s) 113, 800
Cfr13I GGNCC 4 cut(s) 440, 538, 575, 798
CseI GACGC 1 cut(s) 132
Csp6I GTAC 2 cut(s) 481, 777
CviAII CATG 7 cut(s) 349, 565, 596, 632, 858, 908, 1009
CviJI RGCY 8 cut(s) 202, 274, 441, 623, 666, 800, 1026, 1038
CviKI_1 RGCY 8 cut(s) 202, 274, 441, 623, 666, 800, 1026, 1038
CviQI GTAC 2 cut(s) 481, 777
DdeI CTNAG 2 cut(s) 387, 948
DinI GGCGCC 1 cut(s) 112
DpnI GATC 4 cut(s) 375, 404, 936, 1016
DpnII GATC 4 cut(s) 373, 402, 934, 1014
DrdI GACNNNNNNGTC 2 cut(s) 302, 883
DseDI GACNNNNNNGTC 2 cut(s) 302, 883
EciI GGCGGA 1 cut(s) 833
Eco31I GGTCTC 1 cut(s) 830
Eco47I GGWCC 2 cut(s) 538, 575
Eco57I CTGAAG 1 cut(s) 1049
EcoO109I RGGNCCY 1 cut(s) 440
EcoT22I ATGCAT 1 cut(s) 24
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
FaeI CATG 7 cut(s) 352, 568, 599, 635, 861, 911, 1012
FalI AAGNNNNNCTT 1 cut(s) 1022
FaqI GGGAC 1 cut(s) 889
FatI CATG 7 cut(s) 348, 564, 595, 631, 857, 907, 1008
FauNDI CATATG 1 cut(s) 688
FbaI TGATCA 1 cut(s) 1014
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 5 cut(s) 197, 200, 499, 523, 651
FokI GGATG 6 cut(s) 190, 425, 620, 769, 929, 961
Fsp4HI GCNGC 5 cut(s) 197, 200, 499, 523, 651
FspBI CTAG 1 cut(s) 125
GlaI GCGC 2 cut(s) 47, 112
GluI GCNGC 5 cut(s) 197, 200, 499, 523, 651
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 3 cut(s) 202, 441, 800
HapII CCGG 5 cut(s) 114, 206, 573, 590, 801
HgaI GACGC 1 cut(s) 132
HhaI GCGC 2 cut(s) 48, 113
Hin1I GRCGYC 2 cut(s) 111, 249
Hin1II CATG 7 cut(s) 352, 568, 599, 635, 861, 911, 1012
Hin6I GCGC 2 cut(s) 46, 111
HinP1I GCGC 2 cut(s) 46, 111
HinfI GANTC 4 cut(s) 284, 463, 893, 996
HpaII CCGG 5 cut(s) 114, 206, 573, 590, 801
HphI GGTGA 1 cut(s) 542
Hpy166II GTNNAC 4 cut(s) 73, 147, 259, 820
Hpy188I TCNGA 8 cut(s) 140, 157, 254, 295, 388, 949, 979, 1049
Hpy188III TCNNGA 5 cut(s) 168, 354, 590, 791, 908
Hpy8I GTNNAC 4 cut(s) 73, 147, 259, 820
Hpy99I CGWCG 3 cut(s) 100, 251, 284
HpyAV CCTTC 4 cut(s) 86, 211, 326, 393
HpyCH4III ACNGT 2 cut(s) 724, 885
HpyCH4IV ACGT 3 cut(s) 149, 249, 483
HpyCH4V TGCA 5 cut(s) 22, 196, 425, 692, 974
HpyF3I CTNAG 2 cut(s) 387, 948
HpySE526I ACGT 3 cut(s) 149, 249, 483
Hsp92I GRCGYC 2 cut(s) 111, 249
Hsp92II CATG 7 cut(s) 352, 568, 599, 635, 861, 911, 1012
HspAI GCGC 2 cut(s) 46, 111
KasI GGCGCC 1 cut(s) 110
Kpn2I TCCGGA 1 cut(s) 589
KroI GCCGGC 1 cut(s) 800
KroNI GCCGGC 1 cut(s) 802
Ksp22I TGATCA 1 cut(s) 1014
Kzo9I GATC 4 cut(s) 373, 402, 934, 1014
LmnI GCTCC 6 cut(s) 223, 279, 296, 589, 592, 757
Lsp1109I GCAGC 3 cut(s) 208, 534, 637
LweI GCATC 5 cut(s) 183, 523, 571, 727, 983
MaeI CTAG 1 cut(s) 125
MaeII ACGT 3 cut(s) 149, 249, 483
MaeIII GTNAC 2 cut(s) 861, 890
MalI GATC 4 cut(s) 375, 404, 936, 1016
MboI GATC 4 cut(s) 373, 402, 934, 1014
MboII GAAGA 5 cut(s) 226, 383, 707, 929, 1042
MfeI CAATTG 1 cut(s) 930
MhlI GDGCHC 1 cut(s) 754
MluCI AATT 4 cut(s) 341, 365, 676, 930
Mly113I GGCGCC 1 cut(s) 111
MlyI GAGTC 3 cut(s) 278, 457, 887
MmeI TCCRAC 1 cut(s) 318
Mph1103I ATGCAT 1 cut(s) 24
MroI TCCGGA 1 cut(s) 589
MroNI GCCGGC 1 cut(s) 800
MseI TTAA 1 cut(s) 657
MslI CAYNNNNRTG 1 cut(s) 827
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 5 cut(s) 114, 206, 573, 590, 801
MunI CAATTG 1 cut(s) 930
Mva1269I GAATGC 1 cut(s) 24
MvnI CGCG 1 cut(s) 279
NaeI GCCGGC 1 cut(s) 802
NarI GGCGCC 1 cut(s) 111
NdeI CATATG 1 cut(s) 688
NdeII GATC 4 cut(s) 373, 402, 934, 1014
NgoMIV GCCGGC 1 cut(s) 800
NlaIII CATG 7 cut(s) 352, 568, 599, 635, 861, 911, 1012
NlaIV GGNNCC 5 cut(s) 112, 118, 275, 442, 540
NmeAIII GCCGAG 1 cut(s) 766
NmuCI GTSAC 1 cut(s) 890
NsiI ATGCAT 1 cut(s) 24
NspI RCATGY 1 cut(s) 599
NspV TTCGAA 1 cut(s) 369
PagI TCATGA 1 cut(s) 907
PctI GAATGC 1 cut(s) 24
PdiI GCCGGC 1 cut(s) 802
PfeI GAWTC 1 cut(s) 996
PkrI GCNGC 5 cut(s) 198, 201, 500, 524, 652
PleI GAGTC 3 cut(s) 278, 457, 887
PluTI GGCGCC 1 cut(s) 114
PpsI GAGTC 3 cut(s) 278, 457, 887
PspN4I GGNNCC 5 cut(s) 112, 118, 275, 442, 540
PspPI GGNCC 4 cut(s) 440, 538, 575, 798
PstNI CAGNNNCTG 1 cut(s) 551
RsaI GTAC 2 cut(s) 482, 778
RsaNI GTAC 2 cut(s) 481, 777
RseI CAYNNNNRTG 1 cut(s) 827
SaqAI TTAA 1 cut(s) 657
SatI GCNGC 5 cut(s) 197, 200, 499, 523, 651
Sau3AI GATC 4 cut(s) 373, 402, 934, 1014
Sau96I GGNCC 4 cut(s) 440, 538, 575, 798
SchI GAGTC 3 cut(s) 278, 457, 887
SduI GDGCHC 1 cut(s) 754
SfaNI GCATC 5 cut(s) 183, 523, 571, 727, 983
SfoI GGCGCC 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 369
SinI GGWCC 2 cut(s) 538, 575
SmiMI CAYNNNNRTG 1 cut(s) 827
Sse9I AATT 4 cut(s) 341, 365, 676, 930
SsiI CCGC 6 cut(s) 65, 199, 277, 499, 536, 844
SspDI GGCGCC 1 cut(s) 110
SspMI CTAG 1 cut(s) 125
TaaI ACNGT 2 cut(s) 724, 885
TaiI ACGT 3 cut(s) 152, 252, 486
TaqI TCGA 1 cut(s) 369
TasI AATT 4 cut(s) 341, 365, 676, 930
TauI GCSGC 2 cut(s) 202, 501
TfiI GAWTC 1 cut(s) 996
Tru1I TTAA 1 cut(s) 657
Tru9I TTAA 1 cut(s) 657
TscAI CASTG 3 cut(s) 35, 41, 47
TseFI GTSAC 1 cut(s) 890
TseI GCWGC 3 cut(s) 196, 522, 650
Tsp45I GTSAC 1 cut(s) 890
TspDTI ATGAA 2 cut(s) 726, 924
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 3 cut(s) 35, 41, 47
VpaK11BI GGWCC 2 cut(s) 538, 575
XapI RAATTY 1 cut(s) 365
XceI RCATGY 1 cut(s) 599
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 1 cut(s) 125
ZraI GACGTC 1 cut(s) 250
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.