Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009489

Physical Location & Seq

Genomic Coordinates Reverse (-)

815176 .. 816163

Gene Structure 988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAGATTACTGATGGTGAAAGACTCACACTGGCATTATGGTTCAGTCGTGATGCTACCTATGATGAGGATGCTAAACTTATATCCCTTCTCTCACAGAGTCTGTTGCATGATAATGTTCCTAAATTGTGTCTACCTATGCCAGCATCTAGGAATATGTACTGGTTTTCACCCGCTCAAGCTTCTTCTGATCGACCAGTTGGGTTTTGATATATGCTGGGCAAGACTGCATATTCTTGGATACGATCTACTTTTCCGTGAAGACAAGAGCCACTGTTCAAATATTGCTGAGTTACTGATGGAGCCACTGCGATTAGCAAGGGGAGATGAGTTGTTTGACCACGAGTTCATCAACATCTTGCATGCATTGCAGATTGTACAATTCCACTGTTGGAAAGCTCCTGGTCTTGAATCTGCCAAATTAGGTACGAGCAATGTGGTACGCTTGTCCCAATCACAGAGGGAAAGAATTCTTCATATCAAATCTTCATTTGTGAAAGATCTTCATCTGCTAGAGTCTGTTTTCAGCAACGTGGCATGCGCTGAGAGTTTGCAAAATTCCTTTAACTGGGCTGATTTTTCAGTTGCAGTCACTCTCTGGGAAGATTATTCCCGCAAGTTACATAAAGAACTGACCTTGGCGTCGTGGTCAAGGCCAGGTGCCTCCATCTGCACCCACATTCAAATTCCCCTCCCCGTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0019797 GO:0019798 GO:0031543 GO:0031544 GO:0032963 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0051213 GO:0055114 GO:0061077 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

235

Amino Acids

27.03

Weight (kDa)

7.21

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68080 AT1G68080 AT1G68080 AT1G68080 AT1G68080
fragaria_vesca	FvH4_4g33040
malus_domestica	MD16G1013700.v1.1
prunus_persica	Prupe.1G337400_v2.0.a1 Prupe.1G337400_v2.0.a1
pyrus_communis	pycom13g01390 pycom16g01290
rosa_chinensis	RchiOBHm_Chr4g0442081
rosa_laevigata	RLG00000006042
rosa_multiflora	Rmu_sc0002501.1_g000006
rosa_roxburghii	Rroxscaffold_5G00382990
rosa_rugosa	Rorug04G0338700
rosa_samantha	Rh4AG390200 Rh4BG403700 Rh4BG403800 Rh4CG418800 Rh4DG396800
rosa_wichuraiana	Rw4G033720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	640
AccB1I	GGYRCC	1 cut(s)	659
AccBSI	CCGCTC	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	132
AciI	CCGC	2 cut(s)	173, 613
AcsI	RAATTY	3 cut(s)	468, 556, 684
AcyI	GRCGYC	1 cut(s)	641
AfaI	GTAC	4 cut(s)	160, 378, 427, 441
AfiI	CCNNNNNNNGG	1 cut(s)	567
AgsI	TTSAA	3 cut(s)	279, 410, 683
AjnI	CCWGG	2 cut(s)	400, 655
AluBI	AGCT	2 cut(s)	181, 398
AluI	AGCT	2 cut(s)	181, 398
AlwNI	CAGNNNCTG	1 cut(s)	102
AoxI	GGCC	1 cut(s)	653
ApoI	RAATTY	3 cut(s)	468, 556, 684
Asp700I	GAANNNNTTC	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	28, 161
BaeI	ACNNNNGTAYC	2 cut(s)	431, 464
BanI	GGYRCC	1 cut(s)	659
BauI	CACGAG	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	267
BccI	CCATC	3 cut(s)	7, 292, 674
BciT130I	CCWGG	2 cut(s)	402, 657
BciVI	GTATCC	1 cut(s)	233
BfaI	CTAG	2 cut(s)	149, 512
BfuI	GTATCC	1 cut(s)	233
BglII	AGATCT	1 cut(s)	499
Bme1390I	CCNGG	2 cut(s)	402, 657
BmiI	GGNNCC	2 cut(s)	303, 661
BmrFI	CCNGG	2 cut(s)	402, 657
BmrI	ACTGGG	1 cut(s)	577
BmsI	GCATC	3 cut(s)	42, 60, 154
BmuI	ACTGGG	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	641
BsaJI	CCNNGG	1 cut(s)	636
Bsc4I	CCNNNNNNNGG	1 cut(s)	567
Bse1I	ACTGG	4 cut(s)	35, 166, 196, 572
Bse3DI	GCAATG	2 cut(s)	365, 439
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	2 cut(s)	402, 657
BseDI	CCNNGG	1 cut(s)	636
BseGI	GGATG	1 cut(s)	75
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	1 cut(s)	567
BseMI	GCAATG	2 cut(s)	365, 439
BseMII	CTCAG	2 cut(s)	279, 534
BseNI	ACTGG	4 cut(s)	35, 166, 196, 572
BseYI	CCCAGC	1 cut(s)	216
BsgI	GTGCAG	1 cut(s)	655
BshFI	GGCC	1 cut(s)	655
BshNI	GGYRCC	1 cut(s)	659
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	567
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	655
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	189, 244, 499
BspACI	CCGC	2 cut(s)	173, 613
BspANI	GGCC	1 cut(s)	655
BspCNI	CTCAG	2 cut(s)	280, 535
BspLI	GGNNCC	2 cut(s)	303, 661
BspT107I	GGYRCC	1 cut(s)	659
BsrBI	CCGCTC	1 cut(s)	175
BsrDI	GCAATG	2 cut(s)	365, 439
BsrGI	TGTACA	1 cut(s)	376
BsrI	ACTGG	4 cut(s)	35, 166, 196, 572
BssECI	CCNNGG	1 cut(s)	636
BssMI	GATC	3 cut(s)	189, 244, 499
BssNI	GRCGYC	1 cut(s)	641
BssSI	CACGAG	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	636
Bst2BI	CACGAG	1 cut(s)	341
Bst2UI	CCWGG	2 cut(s)	402, 657
Bst4CI	ACNGT	2 cut(s)	275, 389
BstACI	GRCGYC	1 cut(s)	641
BstAPI	GCANNNNNTGC	1 cut(s)	367
BstAUI	TGTACA	1 cut(s)	376
BstC8I	GCNNGC	3 cut(s)	143, 363, 538
BstDEI	CTNAG	2 cut(s)	288, 543
BstF5I	GGATG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	542
BstKTI	GATC	3 cut(s)	192, 247, 502
BstMBI	GATC	3 cut(s)	189, 244, 499
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstNI	CCWGG	2 cut(s)	402, 657
BstNSI	RCATGY	2 cut(s)	365, 540
BstSCI	CCNGG	2 cut(s)	400, 655
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BsuI	GTATCC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	655
BtsCI	GGATG	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	4 cut(s)	28, 271, 305, 385
Cac8I	GCNNGC	3 cut(s)	143, 363, 538
CaiI	CAGNNNCTG	1 cut(s)	102
CfoI	GCGC	1 cut(s)	542
CseI	GACGC	1 cut(s)	630
Csp6I	GTAC	4 cut(s)	159, 377, 426, 440
CviAII	CATG	3 cut(s)	109, 362, 537
CviJI	RGCY	6 cut(s)	181, 270, 304, 398, 572, 655
CviKI_1	RGCY	6 cut(s)	181, 270, 304, 398, 572, 655
CviQI	GTAC	4 cut(s)	159, 377, 426, 440
DdeI	CTNAG	2 cut(s)	288, 543
DpnI	GATC	3 cut(s)	191, 246, 501
DpnII	GATC	3 cut(s)	189, 244, 499
DrdI	GACNNNNNNGTC	1 cut(s)	640
DseDI	GACNNNNNNGTC	1 cut(s)	640
Eco130I	CCWWGG	1 cut(s)	636
EcoRI	GAATTC	1 cut(s)	468
EcoRII	CCWGG	2 cut(s)	400, 655
EcoT14I	CCWWGG	1 cut(s)	636
EcoT22I	ATGCAT	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	636
FaeI	CATG	3 cut(s)	112, 365, 540
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	3 cut(s)	108, 361, 536
FauI	CCCGC	2 cut(s)	180, 620
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	1 cut(s)	82
FspBI	CTAG	2 cut(s)	149, 512
GlaI	GCGC	1 cut(s)	541
GsaI	CCCAGC	1 cut(s)	220
HaeIII	GGCC	1 cut(s)	655
HgaI	GACGC	1 cut(s)	630
HhaI	GCGC	1 cut(s)	542
Hin1I	GRCGYC	1 cut(s)	641
Hin1II	CATG	3 cut(s)	112, 365, 540
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	4 cut(s)	23, 99, 410, 515
HphI	GGTGA	2 cut(s)	28, 161
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	2 cut(s)	49, 407
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	646
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	2 cut(s)	275, 389
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	8 cut(s)	108, 229, 361, 365, 370, 553, 587, 672
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	2 cut(s)	288, 543
HpySE526I	ACGT	1 cut(s)	531
Hsp92I	GRCGYC	1 cut(s)	641
Hsp92II	CATG	3 cut(s)	112, 365, 540
HspAI	GCGC	1 cut(s)	540
Kzo9I	GATC	3 cut(s)	189, 244, 499
LmnI	GCTCC	2 cut(s)	301, 403
LweI	GCATC	3 cut(s)	42, 60, 154
MaeI	CTAG	2 cut(s)	149, 512
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	3 cut(s)	291, 589, 618
MalI	GATC	3 cut(s)	191, 246, 501
MbiI	CCGCTC	1 cut(s)	175
MboI	GATC	3 cut(s)	189, 244, 499
MboII	GAAGA	6 cut(s)	176, 272, 464, 477, 494, 614
MflI	RGATCY	1 cut(s)	499
MluCI	AATT	6 cut(s)	124, 380, 419, 468, 556, 684
MlyI	GAGTC	3 cut(s)	17, 108, 524
MmeI	TCCRAC	1 cut(s)	371
MnlI	CCTC	4 cut(s)	60, 453, 673, 701
Mph1103I	ATGCAT	1 cut(s)	367
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	2 cut(s)	564, 703
MslI	CAYNNNNRTG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	402, 657
MvaI	CCWGG	2 cut(s)	402, 657
MwoI	GCNNNNNNNGC	1 cut(s)	367
NdeII	GATC	3 cut(s)	189, 244, 499
NlaIII	CATG	3 cut(s)	112, 365, 540
NlaIV	GGNNCC	2 cut(s)	303, 661
NmuCI	GTSAC	1 cut(s)	589
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	2 cut(s)	365, 540
PaeI	GCATGC	2 cut(s)	365, 540
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	410
PleI	GAGTC	3 cut(s)	17, 107, 523
PpsI	GAGTC	3 cut(s)	17, 107, 523
Psp6I	CCWGG	2 cut(s)	400, 655
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	2 cut(s)	400, 655
PspN4I	GGNNCC	2 cut(s)	303, 661
PstNI	CAGNNNCTG	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	4 cut(s)	160, 378, 427, 441
RsaNI	GTAC	4 cut(s)	159, 377, 426, 440
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	564, 703
Sau3AI	GATC	3 cut(s)	189, 244, 499
SchI	GAGTC	3 cut(s)	17, 108, 524
ScrFI	CCNGG	2 cut(s)	402, 657
SetI	ASST	8 cut(s)	61, 138, 183, 400, 427, 534, 638, 661
SfaNI	GCATC	3 cut(s)	42, 60, 154
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SphI	GCATGC	2 cut(s)	365, 540
Sse9I	AATT	6 cut(s)	124, 380, 419, 468, 556, 684
SsiI	CCGC	2 cut(s)	173, 613
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	2 cut(s)	149, 512
StyD4I	CCNGG	2 cut(s)	400, 655
StyI	CCWWGG	1 cut(s)	636
TaaI	ACNGT	2 cut(s)	275, 389
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	1 cut(s)	192
TasI	AATT	6 cut(s)	124, 380, 419, 468, 556, 684
TatI	WGTACW	2 cut(s)	158, 376
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	2 cut(s)	564, 703
Tru9I	TTAA	2 cut(s)	564, 703
TscAI	CASTG	4 cut(s)	35, 278, 312, 392
TseFI	GTSAC	1 cut(s)	589
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	4 cut(s)	337, 464, 477, 494
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	4 cut(s)	35, 278, 312, 392
XapI	RAATTY	3 cut(s)	468, 556, 684
XceI	RCATGY	2 cut(s)	365, 540
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	2 cut(s)	149, 512
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.