pycom16g03180

elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0009434
Physical Location & Seq
Reverse (-)
2011146 .. 2012580
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 918 bp
ATGTCTGCTCTTGGGCTATCACAGAAACCTATTTATGTTCATGCTGAGCAGCATACCCCAGACAAGAATGATGGCCTCGACACATTTGAAATCATTCCTGATGCTGTTCCAGTTGTGTTGACTGAACCTCCCATTGAAGATCAACTGGCATGGCATACACTATGGCCAGAGTCACACAAGCTTTACGGTCACGGTAATGAGCTGTTTGCTTTGTGCAGTGATCATGACGGGAAGCTTGTTGCTTCTTCATGTAAGGCCCAATCAGCAGCGGTAGCAGATATATGGCTATGGCAAATTGGTTCATGGAAAGCAGTTGGTCGCTTGCAGTCTCATATTTTGACAGTGACACAAATGGAATTCTCTCATGATGACAAATTCCTGTTGGCTGTGTCAAGGGATCGCCAGTTCTCTGTATTTTCAATCGATAAAGCAGGCACCGATGAAATTACTTACCAGCTCGTAGCAAAGCAGGAGGCACACAAAAGAATTATATGGGCATGCTCTTGGAATCCATACGGGTACGAATTTGCCACAGGCTCGAGGGACAAGACAGTGAAGATCTGGACTGTGGAAAATGAGTCTTCAGTGAAGCTGCTCGCGACTCTTCCCCAGTTCAGTAGTAGCGTCATGGCCCTATCTTGGGTCGGTCTTGATTGCAAGAGCAACGAAGGGCTTCTCGCAGTTGGAATGGAAAACGGACTCATTGAACTGTGGAATCTATCTGTTAAAAGATCTGATGATGGAGTAGCAGGCGCAGTTGCTTCCCTTGTCGTACGGCTTGAGCCGTTGATGTGCCATGTCTCTGCTGTAAACCGTTTGGCGTGGAGAAACTGCAAGAATGAAGATTCCGGTAGCTTACAGCTCGCTTCTTGCGGGGCAGATCAATGTGTGAGAGTGTTCGAGGTTAACATTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000502 GO:0001101 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008023 GO:0008047 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010604 GO:0010950 GO:0010952 GO:0016043 GO:0016070 GO:0016504 GO:0018130 GO:0019222 GO:0019438 GO:0022607 GO:0030162 GO:0030234 GO:0031248 GO:0031323 GO:0031325 GO:0031347 GO:0031349 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0042127 GO:0042221 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045862 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0052547 GO:0052548 GO:0060255 GO:0061133 GO:0061134 GO:0061135 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1902493 GO:1902494 GO:1905368 GO:1905369 GO:1990234 GO:2000024 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

306

Amino Acids

33.75

Weight (kDa)

5.35

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 57 - 143 2.4e-06 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 59 - 143 1.6e-07 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 62 - 241 6e-18 WDR5 beta-propeller domain
Beta-prop_EML PF23409 63 - 252 5.7e-07 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_2nd PF25172 90 - 193 3.5e-06 WDR3 second beta-propeller domain
WD40_CDC20-Fz PF24807 94 - 241 3.5e-12 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 107 - 245 7.9e-08 TEP-1 second beta-propeller
EIF3I PF24805 108 - 201 5.4e-06 EIF3I
WD40 PF00400 153 - 188 1.2e-07 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 160 - 245 2.9e-10 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 434
AccII CGCG 1 cut(s) 599
AciI CCGC 2 cut(s) 269, 873
AclWI GGATC 1 cut(s) 405
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 3 cut(s) 356, 374, 524
AcuI CTGAAG 1 cut(s) 567
AfaI GTAC 2 cut(s) 521, 774
AfiI CCNNNNNNNGG 2 cut(s) 639, 640
AgsI TTSAA 4 cut(s) 89, 137, 420, 707
AloI GAACNNNNNNTCC 2 cut(s) 389, 421
AluBI AGCT 7 cut(s) 181, 202, 235, 457, 592, 855, 862
AluI AGCT 7 cut(s) 181, 202, 235, 457, 592, 855, 862
Alw26I GTCTC 2 cut(s) 333, 805
AlwI GGATC 1 cut(s) 405
Ama87I CYCGRG 1 cut(s) 538
AoxI GGCC 4 cut(s) 73, 164, 255, 630
ApeKI GCWGC 3 cut(s) 49, 266, 592
ApoI RAATTY 3 cut(s) 356, 374, 524
Asp700I GAANNNNTTC 2 cut(s) 93, 672
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 2 cut(s) 256, 631
AvaI CYCGRG 1 cut(s) 538
BalI TGGCCA 1 cut(s) 166
BanI GGYRCC 1 cut(s) 434
BbsI GAAGAC 1 cut(s) 573
BbvI GCAGC 3 cut(s) 61, 278, 579
BccI CCATC 2 cut(s) 65, 734
BceAI ACGGC 2 cut(s) 769, 791
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 2 cut(s) 333, 805
BglII AGATCT 2 cut(s) 558, 731
BisI GCNGC 3 cut(s) 50, 267, 593
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 3 cut(s) 51, 268, 594
BmeT110I CYCGRG 1 cut(s) 538
BmgT120I GGNCC 2 cut(s) 256, 631
BmiI GGNNCC 1 cut(s) 436
BmrI ACTGGG 1 cut(s) 604
BmsI GCATC 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 604
BpiI GAAGAC 1 cut(s) 573
Bpu1102I GCTNAGC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 800
Bsa29I ATCGAT 1 cut(s) 423
BsaWI WCCGGW 1 cut(s) 848
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 2 cut(s) 639, 640
Bse1I ACTGG 4 cut(s) 110, 150, 403, 610
BseCI ATCGAT 1 cut(s) 423
BseLI CCNNNNNNNGG 2 cut(s) 639, 640
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 4 cut(s) 110, 150, 403, 610
BseXI GCAGC 3 cut(s) 61, 278, 579
BsgI GTGCAG 1 cut(s) 235
Bsh1236I CGCG 1 cut(s) 599
BshFI GGCC 4 cut(s) 75, 166, 257, 632
BshNI GGYRCC 1 cut(s) 434
BshVI ATCGAT 1 cut(s) 423
BsiHKCI CYCGRG 1 cut(s) 538
BsiSI CCGG 1 cut(s) 849
BsiWI CGTACG 1 cut(s) 772
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 2 cut(s) 639, 640
BsmAI GTCTC 2 cut(s) 333, 805
BsmFI GGGAC 1 cut(s) 557
BsnI GGCC 4 cut(s) 75, 166, 257, 632
BsoBI CYCGRG 1 cut(s) 538
Bsp143I GATC 6 cut(s) 139, 220, 397, 558, 731, 880
Bsp1720I GCTNAGC 1 cut(s) 45
Bsp68I TCGCGA 1 cut(s) 599
BspACI CCGC 2 cut(s) 269, 873
BspANI GGCC 4 cut(s) 75, 166, 257, 632
BspCNI CTCAG 1 cut(s) 37
BspDI ATCGAT 1 cut(s) 423
BspFNI CGCG 1 cut(s) 599
BspHI TCATGA 2 cut(s) 223, 364
BspLI GGNNCC 1 cut(s) 436
BspPI GGATC 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 434
BsrI ACTGG 4 cut(s) 110, 150, 403, 610
BssMI GATC 6 cut(s) 139, 220, 397, 558, 731, 880
Bst4CI ACNGT 7 cut(s) 188, 194, 343, 553, 568, 711, 815
Bst6I CTCTTC 1 cut(s) 609
BstC8I GCNNGC 6 cut(s) 323, 433, 499, 597, 751, 864
BstDEI CTNAG 1 cut(s) 45
BstFNI CGCG 1 cut(s) 599
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 6 cut(s) 142, 223, 400, 561, 734, 883
BstMAI GTCTC 2 cut(s) 333, 805
BstMBI GATC 6 cut(s) 139, 220, 397, 558, 731, 880
BstMWI GCNNNNNNNGC 2 cut(s) 263, 272
BstNSI RCATGY 1 cut(s) 501
BstUI CGCG 1 cut(s) 599
BstV1I GCAGC 3 cut(s) 61, 278, 579
BstV2I GAAGAC 1 cut(s) 573
BstX2I RGATCY 2 cut(s) 558, 731
BstYI RGATCY 2 cut(s) 558, 731
Bsu15I ATCGAT 1 cut(s) 423
BsuRI GGCC 4 cut(s) 75, 166, 257, 632
BsuTUI ATCGAT 1 cut(s) 423
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 4 cut(s) 223, 348, 558, 591
BtuMI TCGCGA 1 cut(s) 599
Cac8I GCNNGC 6 cut(s) 323, 433, 499, 597, 751, 864
CciI TCATGA 2 cut(s) 223, 364
CfoI GCGC 1 cut(s) 755
Cfr13I GGNCC 2 cut(s) 256, 631
ClaI ATCGAT 1 cut(s) 423
CseI GACGC 1 cut(s) 613
Csp6I GTAC 2 cut(s) 520, 773
CviAII CATG 9 cut(s) 41, 150, 224, 249, 303, 365, 498, 628, 797
CviQI GTAC 2 cut(s) 520, 773
DdeI CTNAG 1 cut(s) 45
DpnI GATC 6 cut(s) 141, 222, 399, 560, 733, 882
DpnII GATC 6 cut(s) 139, 220, 397, 558, 731, 880
EaeI YGGCCR 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 609
EarI CTCTTC 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 567
Eco88I CYCGRG 1 cut(s) 538
EcoRI GAATTC 1 cut(s) 356
FaeI CATG 9 cut(s) 44, 153, 227, 252, 306, 368, 501, 631, 800
FaqI GGGAC 1 cut(s) 557
FatI CATG 9 cut(s) 40, 149, 223, 248, 302, 364, 497, 627, 796
FauI CCCGC 1 cut(s) 866
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 50, 267, 593
Fsp4HI GCNGC 3 cut(s) 50, 267, 593
GlaI GCGC 1 cut(s) 754
GluI GCNGC 3 cut(s) 50, 267, 593
HaeIII GGCC 4 cut(s) 75, 166, 257, 632
HapII CCGG 1 cut(s) 849
HgaI GACGC 1 cut(s) 613
HhaI GCGC 1 cut(s) 755
Hin1II CATG 9 cut(s) 44, 153, 227, 252, 306, 368, 501, 631, 800
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HincII GTYRAC 2 cut(s) 120, 907
HindII GTYRAC 2 cut(s) 120, 907
HindIII AAGCTT 2 cut(s) 179, 233
HinfI GANTC 7 cut(s) 170, 508, 578, 601, 699, 715, 845
HpaI GTTAAC 1 cut(s) 907
HpaII CCGG 1 cut(s) 849
Hpy166II GTNNAC 3 cut(s) 120, 811, 907
Hpy188I TCNGA 1 cut(s) 736
Hpy188III TCNNGA 6 cut(s) 98, 224, 365, 562, 598, 650
Hpy8I GTNNAC 3 cut(s) 120, 811, 907
HpyAV CCTTC 1 cut(s) 662
HpyCH4III ACNGT 7 cut(s) 188, 194, 343, 553, 568, 711, 815
HpyCH4V TGCA 4 cut(s) 216, 325, 657, 834
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 272
HpyF3I CTNAG 1 cut(s) 45
Hsp92II CATG 9 cut(s) 44, 153, 227, 252, 306, 368, 501, 631, 800
HspAI GCGC 1 cut(s) 753
Ksp22I TGATCA 1 cut(s) 220
KspAI GTTAAC 1 cut(s) 907
Kzo9I GATC 6 cut(s) 139, 220, 397, 558, 731, 880
Lsp1109I GCAGC 3 cut(s) 61, 278, 579
LweI GCATC 1 cut(s) 91
MaeIII GTNAC 3 cut(s) 171, 188, 343
MalI GATC 6 cut(s) 141, 222, 399, 560, 733, 882
MboI GATC 6 cut(s) 139, 220, 397, 558, 731, 880
MboII GAAGA 6 cut(s) 149, 237, 568, 573, 596, 854
MflI RGATCY 2 cut(s) 558, 731
MlsI TGGCCA 1 cut(s) 166
MluCI AATT 6 cut(s) 294, 356, 374, 444, 486, 524
MluNI TGGCCA 1 cut(s) 166
MlyI GAGTC 4 cut(s) 179, 587, 595, 693
MmeI TCCRAC 1 cut(s) 664
MnlI CCTC 5 cut(s) 86, 138, 466, 534, 895
Mox20I TGGCCA 1 cut(s) 166
MroXI GAANNNNTTC 2 cut(s) 93, 672
MscI TGGCCA 1 cut(s) 166
MseI TTAA 3 cut(s) 726, 906, 912
MslI CAYNNNNRTG 1 cut(s) 195
Msp20I TGGCCA 1 cut(s) 166
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 1 cut(s) 849
MvnI CGCG 1 cut(s) 599
MwoI GCNNNNNNNGC 2 cut(s) 263, 272
NdeII GATC 6 cut(s) 139, 220, 397, 558, 731, 880
NlaIII CATG 9 cut(s) 44, 153, 227, 252, 306, 368, 501, 631, 800
NlaIV GGNNCC 1 cut(s) 436
NmuCI GTSAC 3 cut(s) 171, 188, 343
NruI TCGCGA 1 cut(s) 599
NspI RCATGY 1 cut(s) 501
PaeI GCATGC 1 cut(s) 501
PaeR7I CTCGAG 1 cut(s) 538
PagI TCATGA 2 cut(s) 223, 364
PdmI GAANNNNTTC 2 cut(s) 93, 672
PfeI GAWTC 3 cut(s) 508, 715, 845
Pfl23II CGTACG 1 cut(s) 772
PkrI GCNGC 3 cut(s) 51, 268, 594
PleI GAGTC 4 cut(s) 178, 586, 595, 693
PpsI GAGTC 4 cut(s) 178, 586, 595, 693
PspLI CGTACG 1 cut(s) 772
PspN4I GGNNCC 1 cut(s) 436
PspPI GGNCC 2 cut(s) 256, 631
PspXI VCTCGAGB 1 cut(s) 538
PsuI RGATCY 2 cut(s) 558, 731
RruI TCGCGA 1 cut(s) 599
RsaI GTAC 2 cut(s) 521, 774
RsaNI GTAC 2 cut(s) 520, 773
RseI CAYNNNNRTG 1 cut(s) 195
SaqAI TTAA 3 cut(s) 726, 906, 912
SatI GCNGC 3 cut(s) 50, 267, 593
Sau3AI GATC 6 cut(s) 139, 220, 397, 558, 731, 880
Sau96I GGNCC 2 cut(s) 256, 631
SchI GAGTC 4 cut(s) 179, 587, 595, 693
SfaNI GCATC 1 cut(s) 91
Sfr274I CTCGAG 1 cut(s) 538
SlaI CTCGAG 1 cut(s) 538
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 2 cut(s) 538, 779
SmoI CTYRAG 2 cut(s) 538, 779
SphI GCATGC 1 cut(s) 501
Sse9I AATT 6 cut(s) 294, 356, 374, 444, 486, 524
SsiI CCGC 2 cut(s) 269, 873
TaaI ACNGT 7 cut(s) 188, 194, 343, 553, 568, 711, 815
TaqI TCGA 4 cut(s) 78, 423, 539, 900
TaqII GACCGA 1 cut(s) 635
TasI AATT 6 cut(s) 294, 356, 374, 444, 486, 524
TfiI GAWTC 3 cut(s) 508, 715, 845
Tru1I TTAA 3 cut(s) 726, 906, 912
Tru9I TTAA 3 cut(s) 726, 906, 912
TscAI CASTG 4 cut(s) 223, 348, 558, 591
TseFI GTSAC 3 cut(s) 171, 188, 343
TseI GCWGC 3 cut(s) 49, 266, 592
Tsp45I GTSAC 3 cut(s) 171, 188, 343
TspDTI ATGAA 5 cut(s) 29, 237, 291, 456, 855
TspGWI ACGGA 1 cut(s) 711
TspRI CASTG 4 cut(s) 223, 348, 558, 591
XapI RAATTY 3 cut(s) 356, 374, 524
XceI RCATGY 1 cut(s) 501
XhoI CTCGAG 1 cut(s) 538
XmnI GAANNNNTTC 2 cut(s) 93, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.