pycom16g04090

GDT1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0009322
Physical Location & Seq
Forward (+)
2514397 .. 2516887
2491 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 684 bp
ATGAGTACAGTCGTGCAGGGTTTCACCAAGTCACTTGCCATGACTGTGCTCTCGGAGATCGGCGACAAGACCTTCTTCGCTGCTGCGATTCTTGCGATGCGCCATCCTAGAAGACTTGTTTTGGCAGGTTGCCTAGGAGCTCTGATTGTGATGACTATTCTTTCTGTTCTCGTCGGCTTGGCTGCTCCAAATCTGCTCTCAAGGAAATGGTCCCATCACATAACGACGGTGTTGTTCTTTGGTTTTGGACTATGGTCCTTATGGGATGCTTTTAAAGAAGATGGGGGTGAAGATGAGCTTGCAGAAGTTGAAGCAGAGTTGGATGCTGATCTAAAGGCTAACGCAGGTGGCAGCAAACGTAGTAAGGATGATGATGACAAGAAGCAGAGACGTTCATTTCTCTTGCAGTTCTTCTCACCAATCTTTTTGAAGGCCTTTTCCATTACTTTTTTCGGTGAATGGGGTGACAAGAGCCAGCTAGCTACCATCGGTCTGGCTGCAGATGAGAACCCATTAGGTGTGGTTCTTGGTGGAATCTTGGGACAAGCGTTGTGTACGACTGCCGCTGTCCTTGGTGGAAAGAGCTTGGCATCTCAGATATCTGAGAAAATAGTTGGTTTATCGGGTGGAGTTCTTTTCATTGTTTTCGGAATCCAATCCTTCCTTTCGACAGTGGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009628 GO:0050896 GO:0080167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0016

Protein Analysis

228

Amino Acids

24.22

Weight (kDa)

5.64

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDT1 PF01169 10 - 83 1.2e-19 Divalent cation/proton antiporter GDT1
GDT1 PF01169 144 - 217 7.1e-24 Divalent cation/proton antiporter GDT1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 335
Acc36I ACCTGC 2 cut(s) 116, 335
AciI CCGC 1 cut(s) 564
AfaI GTAC 2 cut(s) 7, 556
AgsI TTSAA 2 cut(s) 311, 430
AluBI AGCT 5 cut(s) 140, 298, 478, 482, 585
AluI AGCT 5 cut(s) 140, 298, 478, 482, 585
Alw21I GWGCWC 2 cut(s) 51, 142
Alw26I GTCTC 1 cut(s) 382
AoxI GGCC 1 cut(s) 432
ApeKI GCWGC 5 cut(s) 80, 83, 182, 351, 497
AspA2I CCTAGG 1 cut(s) 133
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 2 cut(s) 210, 255
AsuHPI GGTGA 5 cut(s) 16, 299, 408, 467, 476
AsuNHI GCTAGC 1 cut(s) 478
AvaII GGWCC 2 cut(s) 210, 255
AvrII CCTAGG 1 cut(s) 133
BanII GRGCYC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 118
Bbv12I GWGCWC 2 cut(s) 51, 142
BbvI GCAGC 5 cut(s) 67, 70, 169, 363, 484
BccI CCATC 4 cut(s) 111, 222, 275, 494
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 3 cut(s) 108, 134, 479
BfmI CTRYAG 1 cut(s) 498
BfuAI ACCTGC 2 cut(s) 116, 335
BisI GCNGC 6 cut(s) 81, 84, 183, 352, 498, 564
BlnI CCTAGG 1 cut(s) 133
BlsI GCNGC 6 cut(s) 82, 85, 184, 353, 499, 565
Bme18I GGWCC 2 cut(s) 210, 255
BmgT120I GGNCC 2 cut(s) 210, 255
BmiI GGNNCC 1 cut(s) 212
BmsI GCATC 4 cut(s) 87, 256, 313, 599
BmtI GCTAGC 1 cut(s) 482
BoxI GACNNNNGTC 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 327
BsaJI CCNNGG 2 cut(s) 133, 571
Bse8I GATNNNNATC 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 133, 571
BseGI GGATG 4 cut(s) 103, 271, 328, 373
BseJI GATNNNNATC 1 cut(s) 327
BseMII CTCAG 2 cut(s) 594, 608
BseXI GCAGC 5 cut(s) 67, 70, 169, 363, 484
BsgI GTGCAG 1 cut(s) 35
BshFI GGCC 1 cut(s) 434
BsiHKAI GWGCWC 2 cut(s) 51, 142
BslFI GGGAC 2 cut(s) 196, 555
BsmAI GTCTC 1 cut(s) 382
BsmBI CGTCTC 1 cut(s) 382
BsmFI GGGAC 2 cut(s) 196, 555
BsnI GGCC 1 cut(s) 434
Bsp1286I GDGCHC 2 cut(s) 51, 142
Bsp143I GATC 2 cut(s) 57, 328
BspACI CCGC 1 cut(s) 564
BspANI GGCC 1 cut(s) 434
BspCNI CTCAG 2 cut(s) 595, 607
BspLI GGNNCC 1 cut(s) 212
BspMAI CTGCAG 1 cut(s) 502
BspMI ACCTGC 2 cut(s) 116, 335
BspOI GCTAGC 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 133, 571
BssMI GATC 2 cut(s) 57, 328
BssT1I CCWWGG 2 cut(s) 133, 571
Bst4CI ACNGT 4 cut(s) 10, 46, 229, 673
BstC8I GCNNGC 3 cut(s) 300, 476, 480
BstDEI CTNAG 2 cut(s) 594, 603
BstF5I GGATG 4 cut(s) 103, 271, 328, 373
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 2 cut(s) 60, 331
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 2 cut(s) 57, 328
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstPAI GACNNNNGTC 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 498
BstV1I GCAGC 5 cut(s) 67, 70, 169, 363, 484
BstV2I GAAGAC 1 cut(s) 118
BstXI CCANNNNNNTGG 1 cut(s) 493
BsuRI GGCC 1 cut(s) 434
BtgZI GCGATG 1 cut(s) 110
BtsCI GGATG 4 cut(s) 103, 271, 328, 373
BtsIMutI CAGTG 1 cut(s) 678
BveI ACCTGC 2 cut(s) 116, 335
Cac8I GCNNGC 3 cut(s) 300, 476, 480
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 2 cut(s) 210, 255
Csp6I GTAC 2 cut(s) 6, 555
CviAII CATG 1 cut(s) 40
CviQI GTAC 2 cut(s) 6, 555
DdeI CTNAG 2 cut(s) 594, 603
DpnI GATC 2 cut(s) 59, 330
DpnII GATC 2 cut(s) 57, 328
DraI TTTAAA 1 cut(s) 274
Ecl136II GAGCTC 1 cut(s) 140
Eco130I CCWWGG 2 cut(s) 133, 571
Eco147I AGGCCT 1 cut(s) 434
Eco24I GRGCYC 1 cut(s) 142
Eco32I GATATC 1 cut(s) 600
Eco47I GGWCC 2 cut(s) 210, 255
Eco53kI GAGCTC 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 140
EcoRV GATATC 1 cut(s) 600
EcoT14I CCWWGG 2 cut(s) 133, 571
EcoT38I GRGCYC 1 cut(s) 142
ErhI CCWWGG 2 cut(s) 133, 571
Esp3I CGTCTC 1 cut(s) 382
FaeI CATG 1 cut(s) 43
FaiI YATR 4 cut(s) 41, 221, 253, 262
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 282, 314
FaqI GGGAC 2 cut(s) 196, 555
FatI CATG 1 cut(s) 39
Fnu4HI GCNGC 6 cut(s) 81, 84, 183, 352, 498, 564
FokI GGATG 4 cut(s) 90, 278, 335, 380
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 6 cut(s) 81, 84, 183, 352, 498, 564
FspBI CTAG 3 cut(s) 108, 134, 479
GlaI GCGC 1 cut(s) 101
GluI GCNGC 6 cut(s) 81, 84, 183, 352, 498, 564
HaeIII GGCC 1 cut(s) 434
HhaI GCGC 1 cut(s) 102
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 3 cut(s) 88, 534, 651
HphI GGTGA 5 cut(s) 16, 299, 408, 467, 476
Hpy166II GTNNAC 1 cut(s) 555
Hpy188I TCNGA 5 cut(s) 55, 144, 597, 604, 650
Hpy8I GTNNAC 1 cut(s) 555
Hpy99I CGWCG 2 cut(s) 176, 229
HpyAV CCTTC 3 cut(s) 82, 424, 670
HpyCH4III ACNGT 4 cut(s) 10, 46, 229, 673
HpyCH4IV ACGT 2 cut(s) 358, 391
HpyCH4V TGCA 4 cut(s) 16, 302, 406, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 594, 603
HpySE526I ACGT 2 cut(s) 358, 391
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 1 cut(s) 100
Kzo9I GATC 2 cut(s) 57, 328
LmnI GCTCC 2 cut(s) 137, 190
LpnPI CCDG 5 cut(s) 2, 111, 330, 479, 488
Lsp1109I GCAGC 5 cut(s) 67, 70, 169, 363, 484
LweI GCATC 4 cut(s) 87, 256, 313, 599
MaeI CTAG 3 cut(s) 108, 134, 479
MaeII ACGT 2 cut(s) 358, 391
MaeIII GTNAC 2 cut(s) 30, 464
MalI GATC 2 cut(s) 59, 330
MboI GATC 2 cut(s) 57, 328
MboII GAAGA 5 cut(s) 67, 123, 290, 302, 403
MhlI GDGCHC 2 cut(s) 51, 142
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 1 cut(s) 670
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 566
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 2 cut(s) 57, 328
NheI GCTAGC 1 cut(s) 478
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 212
NmuCI GTSAC 2 cut(s) 30, 464
PaqCI CACCTGC 1 cut(s) 335
PceI AGGCCT 1 cut(s) 434
PfeI GAWTC 3 cut(s) 88, 534, 651
PkrI GCNGC 6 cut(s) 82, 85, 184, 353, 499, 565
PshAI GACNNNNGTC 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 2 cut(s) 210, 255
PstI CTGCAG 1 cut(s) 502
RsaI GTAC 2 cut(s) 7, 556
RsaNI GTAC 2 cut(s) 6, 555
RseI CAYNNNNRTG 1 cut(s) 44
SacI GAGCTC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 6 cut(s) 81, 84, 183, 352, 498, 564
Sau3AI GATC 2 cut(s) 57, 328
Sau96I GGNCC 2 cut(s) 210, 255
SduI GDGCHC 2 cut(s) 51, 142
SfaNI GCATC 4 cut(s) 87, 256, 313, 599
SfcI CTRYAG 1 cut(s) 498
SinI GGWCC 2 cut(s) 210, 255
SmiMI CAYNNNNRTG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
SseBI AGGCCT 1 cut(s) 434
SsiI CCGC 1 cut(s) 564
SspMI CTAG 3 cut(s) 108, 134, 479
SstI GAGCTC 1 cut(s) 142
StuI AGGCCT 1 cut(s) 434
StyI CCWWGG 2 cut(s) 133, 571
TaaI ACNGT 4 cut(s) 10, 46, 229, 673
TaiI ACGT 2 cut(s) 361, 394
TaqI TCGA 1 cut(s) 668
TaqII GACCGA 1 cut(s) 479
TatI WGTACW 1 cut(s) 5
TauI GCSGC 1 cut(s) 566
TfiI GAWTC 3 cut(s) 88, 534, 651
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 678
TseFI GTSAC 2 cut(s) 30, 464
TseI GCWGC 5 cut(s) 80, 83, 182, 351, 497
Tsp45I GTSAC 2 cut(s) 30, 464
TspDTI ATGAA 2 cut(s) 384, 628
TspRI CASTG 1 cut(s) 678
VpaK11BI GGWCC 2 cut(s) 210, 255
XmaJI CCTAGG 1 cut(s) 133
XspI CTAG 3 cut(s) 108, 134, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.