Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0016177

Physical Location & Seq

Genomic Coordinates Forward (+)

4835564 .. 4836355

Gene Structure 792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCAATCGGAAACCAATACCGTAGGAGCTTGTGCCGAGAAGAAGCTCAGGCTTTTCGGATTTGAGCTGAATCCACGTAGGAATGAAGAAACCTCCATGAAAGGAGGACGGTCAGCAGCAGAAGGTGGTGGGGATGAAAGTGTAAATTCATCAAACTCTGTCTCACATCCGATAAAATTGGAACGATACAGAGAGAATGAGAAAAGCTCGACTAGTGATCCAGATGACAAGAAATTCGAGTGCCAATATTGCTTCAAGGAGTTTGCAAATTCGCAAGCACTGGGTGGGCATCAAAATGCACACAAAAAGGAGAGAATGAAGAAAAAAAGGCTCCAGCTTCAAGCCAGAAAAGCCAGAATCAACTATTACCTCCAGCCTTTCCAAACTTTCCACCACCATGGCTCTACGGTGGCTCCATCGTGGTTCTACGACCCCTCATCGTATCTCAATCCTGACCATCCATTCACCCTCCACGAAGAATCCCAGATCAGCTTCAACTCGTTCGATCAAAGTTATGGGTCCTCGAGCGGGTCCCACTCTCAGGTTTCCAATTGGTATTCAGTGCCACCTCAGCAGCAGTTTCCTTCTTCCCAAACGGGAGAACAAGATCATGTTATAAACCTTAATAAGTTTACGTTAACGCAAACAGACAGGTCGGGAGAAAGCAGGCCTATCGTCTTCAAGCCTTCTCCTTTATCTGCTTCAACTCATCAGAGCTGTAAACCGTTGGATCTTCAGTTAGAGCTCGGTGTGCCGTCGAAAATTCGGAGATCTTCTAGGAGTGAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010026 GO:0010033 GO:0010053 GO:0010054 GO:0010468 GO:0010476 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0040034 GO:0042221 GO:0044212 GO:0048364 GO:0048468 GO:0048469 GO:0048506 GO:0048509 GO:0048510 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071695 GO:0071840 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

264

Amino Acids

29.72

Weight (kDa)

8.79

Isoelectric Point (pI)

64.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10480
fragaria_vesca	FvH4_4g35130
malus_domestica	MD13G1086000.v1.1 MD16G1085400.v1.1
prunus_persica	Prupe.1G260700_v2.0.a1
pyrus_communis	pycom16g07380
rosa_laevigata	RLG00000005807
rosa_multiflora	Rmu_sc0012443.1_g000007
rosa_roxburghii	Rroxscaffold_5G00385250
rosa_rugosa	Rorug04G0354900
rosa_samantha	Rh4AG415600 Rh4BG426900 Rh4CG441700 Rh4DG422900
rosa_wichuraiana	Rw4G035660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	617
AccBSI	CCGCTC	1 cut(s)	528
AciI	CCGC	1 cut(s)	528
AclWI	GGATC	2 cut(s)	212, 738
AcsI	RAATTY	4 cut(s)	145, 233, 268, 762
AcuI	CTGAAG	1 cut(s)	719
AdeI	CACNNNGTG	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	528, 541
AgsI	TTSAA	5 cut(s)	256, 341, 496, 682, 705
AhlI	ACTAGT	1 cut(s)	212
AluBI	AGCT	8 cut(s)	29, 46, 67, 207, 337, 492, 717, 745
AluI	AGCT	8 cut(s)	29, 46, 67, 207, 337, 492, 717, 745
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	2 cut(s)	212, 738
Ama87I	CYCGRG	1 cut(s)	523
AoxI	GGCC	1 cut(s)	668
ApeKI	GCWGC	2 cut(s)	116, 574
ApoI	RAATTY	4 cut(s)	145, 233, 268, 762
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspS9I	GGNCC	2 cut(s)	519, 531
AsuHPI	GGTGA	1 cut(s)	457
AvaI	CYCGRG	1 cut(s)	523
AvaII	GGWCC	2 cut(s)	519, 531
BanII	GRGCYC	1 cut(s)	747
BbsI	GAAGAC	1 cut(s)	670
Bbv12I	GWGCWC	1 cut(s)	747
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	2 cut(s)	128, 586
BccI	CCATC	2 cut(s)	424, 465
BceAI	ACGGC	1 cut(s)	739
BcgI	CGANNNNNNTGC	2 cut(s)	655, 689
BcoDI	GTCTC	1 cut(s)	166
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	2 cut(s)	213, 777
BglII	AGATCT	1 cut(s)	770
BisI	GCNGC	2 cut(s)	117, 575
BlsI	GCNGC	2 cut(s)	118, 576
Bme18I	GGWCC	2 cut(s)	519, 531
BmeT110I	CYCGRG	1 cut(s)	523
BmgT120I	GGNCC	2 cut(s)	519, 531
BmiI	GGNNCC	5 cut(s)	332, 414, 520, 532, 533
BmrI	ACTGGG	1 cut(s)	290
BmsI	GCATC	1 cut(s)	298
BmuI	ACTGGG	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	670
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpmI	CTGGAG	2 cut(s)	317, 356
Bpu10I	CCTNAGC	2 cut(s)	47, 570
BsaAI	YACGTR	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	2 cut(s)	528, 541
Bse1I	ACTGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	3 cut(s)	139, 166, 457
BseLI	CCNNNNNNNGG	2 cut(s)	528, 541
BseMII	CTCAG	3 cut(s)	61, 554, 584
BseNI	ACTGG	1 cut(s)	285
BseXI	GCAGC	2 cut(s)	128, 586
BshFI	GGCC	1 cut(s)	670
BsiHKAI	GWGCWC	1 cut(s)	747
BsiHKCI	CYCGRG	1 cut(s)	523
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	2 cut(s)	528, 541
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	517
BsnI	GGCC	1 cut(s)	670
BsoBI	CYCGRG	1 cut(s)	523
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	6 cut(s)	217, 486, 505, 607, 730, 770
Bsp19I	CCATGG	1 cut(s)	397
BspACI	CCGC	1 cut(s)	528
BspANI	GGCC	1 cut(s)	670
BspCNI	CTCAG	3 cut(s)	60, 553, 583
BspLI	GGNNCC	5 cut(s)	332, 414, 520, 532, 533
BspPI	GGATC	2 cut(s)	212, 738
BsrBI	CCGCTC	1 cut(s)	528
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	6 cut(s)	217, 486, 505, 607, 730, 770
BssT1I	CCWWGG	1 cut(s)	397
Bst4CI	ACNGT	4 cut(s)	22, 111, 409, 726
BstBAI	YACGTR	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	276, 668
BstDEI	CTNAG	4 cut(s)	47, 540, 570, 789
BstDSI	CCRYGG	1 cut(s)	397
BstF5I	GGATG	3 cut(s)	139, 166, 457
BstKTI	GATC	6 cut(s)	220, 489, 508, 610, 733, 773
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	6 cut(s)	217, 486, 505, 607, 730, 770
BstMWI	GCNNNNNNNGC	4 cut(s)	249, 350, 571, 751
BstV1I	GCAGC	2 cut(s)	128, 586
BstV2I	GAAGAC	1 cut(s)	670
BstX2I	RGATCY	2 cut(s)	730, 770
BstXI	CCANNNNNNTGG	1 cut(s)	398
BstYI	RGATCY	2 cut(s)	730, 770
BsuRI	GGCC	1 cut(s)	670
BtgI	CCRYGG	1 cut(s)	397
BtsCI	GGATG	3 cut(s)	139, 166, 457
BtsIMutI	CAGTG	2 cut(s)	278, 567
Cac8I	GCNNGC	2 cut(s)	276, 668
Cfr13I	GGNCC	2 cut(s)	519, 531
CviAII	CATG	3 cut(s)	97, 398, 611
DdeI	CTNAG	4 cut(s)	47, 540, 570, 789
DpnI	GATC	6 cut(s)	219, 488, 507, 609, 732, 772
DpnII	GATC	6 cut(s)	217, 486, 505, 607, 730, 770
DraIII	CACNNNGTG	1 cut(s)	284
Ecl136II	GAGCTC	1 cut(s)	745
Eco130I	CCWWGG	1 cut(s)	397
Eco147I	AGGCCT	1 cut(s)	670
Eco24I	GRGCYC	1 cut(s)	747
Eco47I	GGWCC	2 cut(s)	519, 531
Eco53kI	GAGCTC	1 cut(s)	745
Eco57I	CTGAAG	1 cut(s)	719
Eco88I	CYCGRG	1 cut(s)	523
EcoICRI	GAGCTC	1 cut(s)	745
EcoO109I	RGGNCCY	2 cut(s)	519, 531
EcoT14I	CCWWGG	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	747
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	3 cut(s)	100, 401, 614
FaiI	YATR	5 cut(s)	98, 399, 516, 612, 617
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	3 cut(s)	96, 397, 610
FauI	CCCGC	1 cut(s)	521
Fnu4HI	GCNGC	2 cut(s)	117, 575
FokI	GGATG	3 cut(s)	146, 153, 444
FriOI	GRGCYC	1 cut(s)	747
Fsp4HI	GCNGC	2 cut(s)	117, 575
FspBI	CTAG	2 cut(s)	213, 777
GluI	GCNGC	2 cut(s)	117, 575
GsuI	CTGGAG	2 cut(s)	317, 356
HaeIII	GGCC	1 cut(s)	670
Hin1II	CATG	3 cut(s)	100, 401, 614
HincII	GTYRAC	1 cut(s)	639
HindII	GTYRAC	1 cut(s)	639
HinfI	GANTC	3 cut(s)	70, 357, 479
HpaI	GTTAAC	1 cut(s)	639
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	3 cut(s)	633, 639, 722
Hpy188I	TCNGA	5 cut(s)	10, 59, 171, 714, 768
Hpy188III	TCNNGA	3 cut(s)	221, 452, 657
Hpy8I	GTNNAC	3 cut(s)	633, 639, 722
Hpy99I	CGWCG	1 cut(s)	760
HpyAV	CCTTC	3 cut(s)	116, 594, 696
HpyCH4III	ACNGT	4 cut(s)	22, 111, 409, 726
HpyCH4IV	ACGT	2 cut(s)	76, 635
HpyCH4V	TGCA	3 cut(s)	4, 266, 299
HpyF10VI	GCNNNNNNNGC	4 cut(s)	249, 350, 571, 751
HpyF3I	CTNAG	4 cut(s)	47, 540, 570, 789
HpySE526I	ACGT	2 cut(s)	76, 635
Hsp92II	CATG	3 cut(s)	100, 401, 614
KflI	GGGWCCC	1 cut(s)	531
KspAI	GTTAAC	1 cut(s)	639
Kzo9I	GATC	6 cut(s)	217, 486, 505, 607, 730, 770
LmnI	GCTCC	3 cut(s)	26, 336, 418
Lsp1109I	GCAGC	2 cut(s)	128, 586
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	213, 777
MaeII	ACGT	2 cut(s)	76, 635
MalI	GATC	6 cut(s)	219, 488, 507, 609, 732, 772
MbiI	CCGCTC	1 cut(s)	528
MboI	GATC	6 cut(s)	217, 486, 505, 607, 730, 770
MboII	GAAGA	8 cut(s)	52, 98, 331, 488, 579, 670, 725, 765
MfeI	CAATTG	1 cut(s)	550
MflI	RGATCY	2 cut(s)	730, 770
MhlI	GDGCHC	1 cut(s)	747
MluCI	AATT	6 cut(s)	145, 176, 233, 268, 550, 762
MmeI	TCCRAC	1 cut(s)	708
MnlI	CCTC	8 cut(s)	98, 103, 380, 445, 479, 532, 579, 778
MseI	TTAA	2 cut(s)	624, 638
MslI	CAYNNNNRTG	2 cut(s)	294, 396
MunI	CAATTG	1 cut(s)	550
MwoI	GCNNNNNNNGC	4 cut(s)	249, 350, 571, 751
NcoI	CCATGG	1 cut(s)	397
NdeII	GATC	6 cut(s)	217, 486, 505, 607, 730, 770
NlaIII	CATG	3 cut(s)	100, 401, 614
NlaIV	GGNNCC	5 cut(s)	332, 414, 520, 532, 533
NmeAIII	GCCGAG	1 cut(s)	61
PaeR7I	CTCGAG	1 cut(s)	523
PceI	AGGCCT	1 cut(s)	670
PfeI	GAWTC	3 cut(s)	70, 357, 479
PkrI	GCNGC	2 cut(s)	118, 576
Ppu21I	YACGTR	1 cut(s)	77
PpuMI	RGGWCCY	2 cut(s)	519, 531
PsiI	TTATAA	1 cut(s)	617
Psp124BI	GAGCTC	1 cut(s)	747
Psp5II	RGGWCCY	2 cut(s)	519, 531
PspN4I	GGNNCC	5 cut(s)	332, 414, 520, 532, 533
PspPI	GGNCC	2 cut(s)	519, 531
PspPPI	RGGWCCY	2 cut(s)	519, 531
PspXI	VCTCGAGB	1 cut(s)	523
PsuI	RGATCY	2 cut(s)	730, 770
RseI	CAYNNNNRTG	2 cut(s)	294, 396
SacI	GAGCTC	1 cut(s)	747
SaqAI	TTAA	2 cut(s)	624, 638
SatI	GCNGC	2 cut(s)	117, 575
Sau3AI	GATC	6 cut(s)	217, 486, 505, 607, 730, 770
Sau96I	GGNCC	2 cut(s)	519, 531
SduI	GDGCHC	1 cut(s)	747
SfaNI	GCATC	1 cut(s)	298
Sfr274I	CTCGAG	1 cut(s)	523
SinI	GGWCC	2 cut(s)	519, 531
SlaI	CTCGAG	1 cut(s)	523
SmiMI	CAYNNNNRTG	2 cut(s)	294, 396
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
SpeI	ACTAGT	1 cut(s)	212
Sse9I	AATT	6 cut(s)	145, 176, 233, 268, 550, 762
SseBI	AGGCCT	1 cut(s)	670
SsiI	CCGC	1 cut(s)	528
SspI	AATATT	1 cut(s)	248
SspMI	CTAG	2 cut(s)	213, 777
SstI	GAGCTC	1 cut(s)	747
StuI	AGGCCT	1 cut(s)	670
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	4 cut(s)	22, 111, 409, 726
TaiI	ACGT	2 cut(s)	79, 638
TaqI	TCGA	5 cut(s)	209, 237, 504, 524, 758
TasI	AATT	6 cut(s)	145, 176, 233, 268, 550, 762
TfiI	GAWTC	3 cut(s)	70, 357, 479
Tru1I	TTAA	2 cut(s)	624, 638
Tru9I	TTAA	2 cut(s)	624, 638
TscAI	CASTG	2 cut(s)	285, 567
TseI	GCWGC	2 cut(s)	116, 574
TspDTI	ATGAA	5 cut(s)	99, 113, 138, 150, 332
TspRI	CASTG	2 cut(s)	285, 567
VpaK11BI	GGWCC	2 cut(s)	519, 531
XapI	RAATTY	4 cut(s)	145, 233, 268, 762
XhoI	CTCGAG	1 cut(s)	523
XspI	CTAG	2 cut(s)	213, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.