Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009238

Physical Location & Seq

Genomic Coordinates Forward (+)

6248521 .. 6250300

Gene Structure 1780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGTTGCATTACGAAGAAATTGGCTTCAAAAACAGCGACCAAAGACATCATCACTCTGCGTGGCTCCGCAGCCATTGCCAGCGAGTTCTTCGTCGGCAAACAGTATTCTGTACAATCGAGGAGTGTATCCTGAAGAAAGCTTTGTGAAGGTGAAGAAATATGGATTGCCAATGTTGCTTACTCAAGACGAGGGCCTCAAATCCTTCATTGCCAACCTAACCGCTCAGCTTTCTGAATGGCTGGAATCTGGAAAGTTGCAAAGAGTTGTTCTTGTTATAATGAGCAAGGCCACCAATGAGGTTCTTGAGAGGTGGAACTTCAGCATTGAGACTGATAGCGAGGTTGTCGAGCAGGGCGTGTCGAGGGAAAAAAGTGACAAGGAAATCATGAGGGAGATTCAGGCAATCATGAGGCAGATTGCTTCGAGCATCACTTACTTGCCATGCCTTGATGAACCCTGTGTGTTTGATGTGTTGGCATACACGGATAAAGATGTTGCAGTCCCATTCACTTGGATCGATAGTGATCCGAAACTGATTACAAATCCAGAAATTGTAAAACTGCATTCCTTTGACACCAAGATTCACAAGGTTAACACTCTAGTGTCGTACAAGAACGACGAATGGGACGAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010369 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015630 GO:0022402 GO:0030071 GO:0031577 GO:0031967 GO:0031975 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05166 map04110 map04111 map04113 map04114 map04914 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

213

Amino Acids

24.2

Weight (kDa)

5.36

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HORMA	PF02301	32 - 196	6.6e-19	HORMA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25980 AT3G25980 AT3G25980 AT3G25980
fragaria_vesca	FvH4_4g24620 FvH4_4g24620 FvH4_4g24620 FvH4_4g24620
malus_domestica	MD13G1109700.v1.1 MD16G1109600.v1.1
prunus_persica	Prupe.1G235300_v2.0.a1 Prupe.1G235600_v2.0.a1
pyrus_communis	pycom13g09550 pycom16g09320
rosa_chinensis	RchiOBHm_Chr4g0431671
rosa_laevigata	RLG00000006898
rosa_multiflora	Rmu_sc0005185.1_g000006 Rmu_sc0011757.1_g000004
rosa_roxburghii	Rroxscaffold_5G00373110
rosa_rugosa	Rorug04G0251700
rosa_samantha	Rh4DG310800
rosa_wichuraiana	Rw4G026740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	224
AciI	CCGC	2 cut(s)	68, 222
AclWI	GGATC	2 cut(s)	521, 524
AcuI	CTGAAG	2 cut(s)	153, 304
AfaI	GTAC	2 cut(s)	113, 611
AgsI	TTSAA	1 cut(s)	29
AleI	CACNNNNGTG	1 cut(s)	602
AluBI	AGCT	2 cut(s)	141, 229
AluI	AGCT	2 cut(s)	141, 229
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	2 cut(s)	521, 524
AoxI	GGCC	2 cut(s)	193, 288
ApeKI	GCWGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	82
BciVI	GTATCC	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	1 cut(s)	602
BfuI	GTATCC	1 cut(s)	138
BisI	GCNGC	1 cut(s)	71
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	66
BmsI	GCATC	1 cut(s)	438
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	168, 326
Bsa29I	ATCGAT	1 cut(s)	519
BsaBI	GATNNNNATC	1 cut(s)	525
Bse3DI	GCAATG	2 cut(s)	74, 207
Bse8I	GATNNNNATC	1 cut(s)	525
BseCI	ATCGAT	1 cut(s)	519
BseJI	GATNNNNATC	1 cut(s)	525
BseMI	GCAATG	2 cut(s)	74, 207
BseMII	CTCAG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	82
BshFI	GGCC	2 cut(s)	195, 290
BshVI	ATCGAT	1 cut(s)	519
BslFI	GGGAC	1 cut(s)	488
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	488
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	2 cut(s)	195, 290
Bsp1407I	TGTACA	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	516, 526
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	2 cut(s)	68, 222
BspANI	GGCC	2 cut(s)	195, 290
BspCNI	CTCAG	1 cut(s)	238
BspDI	ATCGAT	1 cut(s)	519
BspHI	TCATGA	2 cut(s)	387, 408
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	2 cut(s)	521, 524
BsrBI	CCGCTC	1 cut(s)	224
BsrDI	GCAATG	2 cut(s)	74, 207
BsrGI	TGTACA	1 cut(s)	111
BssMI	GATC	2 cut(s)	516, 526
Bst4CI	ACNGT	1 cut(s)	104
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstAUI	TGTACA	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	225
BstKTI	GATC	2 cut(s)	519, 529
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	2 cut(s)	516, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 175
BstV1I	GCAGC	1 cut(s)	82
BstXI	CCANNNNNNTGG	1 cut(s)	513
Bsu15I	ATCGAT	1 cut(s)	519
BsuI	GTATCC	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	195, 290
BsuTUI	ATCGAT	1 cut(s)	519
Cac8I	GCNNGC	1 cut(s)	81
CciI	TCATGA	2 cut(s)	387, 408
Cfr13I	GGNCC	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	519
Csp6I	GTAC	2 cut(s)	112, 610
CviAII	CATG	3 cut(s)	388, 409, 444
CviJI	RGCY	8 cut(s)	25, 65, 73, 141, 195, 229, 241, 290
CviKI_1	RGCY	8 cut(s)	25, 65, 73, 141, 195, 229, 241, 290
CviQI	GTAC	2 cut(s)	112, 610
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	2 cut(s)	518, 528
DpnII	GATC	2 cut(s)	516, 526
Eco57I	CTGAAG	2 cut(s)	153, 304
EcoO109I	RGGNCCY	1 cut(s)	193
FaeI	CATG	3 cut(s)	391, 412, 447
FaiI	YATR	6 cut(s)	162, 278, 389, 410, 445, 481
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	3 cut(s)	387, 408, 443
Fnu4HI	GCNGC	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	71
FspBI	CTAG	1 cut(s)	602
GluI	GCNGC	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	195, 290
Hin1II	CATG	3 cut(s)	391, 412, 447
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	3 cut(s)	245, 397, 583
HpaI	GTTAAC	1 cut(s)	595
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	2 cut(s)	235, 531
Hpy188III	TCNNGA	7 cut(s)	131, 185, 249, 305, 388, 409, 548
Hpy8I	GTNNAC	1 cut(s)	595
Hpy99I	CGWCG	2 cut(s)	97, 623
HpyAV	CCTTC	2 cut(s)	142, 214
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	4 cut(s)	8, 259, 500, 565
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 175
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	391, 412, 447
KspAI	GTTAAC	1 cut(s)	595
Kzo9I	GATC	2 cut(s)	516, 526
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	8 cut(s)	93, 144, 227, 234, 338, 386, 472, 561
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	1 cut(s)	438
MaeI	CTAG	1 cut(s)	602
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	2 cut(s)	518, 528
MbiI	CCGCTC	1 cut(s)	224
MboI	GATC	2 cut(s)	516, 526
MboII	GAAGA	4 cut(s)	27, 81, 146, 166
MluCI	AATT	2 cut(s)	19, 552
MnlI	CCTC	9 cut(s)	113, 184, 206, 292, 303, 334, 357, 384, 405
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	1 cut(s)	602
Mva1269I	GAATGC	1 cut(s)	565
MwoI	GCNNNNNNNGC	2 cut(s)	76, 175
NdeII	GATC	2 cut(s)	516, 526
NlaIII	CATG	3 cut(s)	391, 412, 447
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	374
OliI	CACNNNNGTG	1 cut(s)	602
PagI	TCATGA	2 cut(s)	387, 408
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 627
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	3 cut(s)	245, 397, 583
PkrI	GCNGC	1 cut(s)	72
PsiI	TTATAA	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	193
RsaI	GTAC	2 cut(s)	113, 611
RsaNI	GTAC	2 cut(s)	112, 610
RseI	CAYNNNNRTG	1 cut(s)	602
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	2 cut(s)	516, 526
Sau96I	GGNCC	1 cut(s)	193
SetI	ASST	8 cut(s)	143, 153, 219, 231, 303, 314, 345, 594
SfaNI	GCATC	1 cut(s)	438
SmiMI	CAYNNNNRTG	1 cut(s)	602
SmlI	CTYRAG	2 cut(s)	183, 305
SmoI	CTYRAG	2 cut(s)	183, 305
Sse9I	AATT	2 cut(s)	19, 552
SsiI	CCGC	2 cut(s)	68, 222
SspMI	CTAG	1 cut(s)	602
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	5 cut(s)	118, 348, 362, 425, 519
TasI	AATT	2 cut(s)	19, 552
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	3 cut(s)	245, 397, 583
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	196, 468
TspGWI	ACGGA	1 cut(s)	500
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.