Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0018906

Physical Location & Seq

Genomic Coordinates Reverse (-)

6707017 .. 6708347

Gene Structure 1331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGTTTATCATCGTAGATCATTGGTTGACTGTTTTTGTTTTCTTCTGCAGTTGCACAGAGAGTTGTGCAAGGCACTCTCTGCAATTTATTGCAAAATAATGTCAATATTTCCTTCTTTGGAAGCAGCGCGACCTAGGAGCAAGTCTGGTATCCAAGCTTTATGTTCATTACATCTAGCACTTGAAAAATCTAAGAATGTTCTTCAGCATTGCGTAGAATGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTGCCCTCAAAATTTGAAAAGGCAAGATGTGCTCTCATGGATAGTCTTAGGCGTGTTGAAGACATTGTTCCACAATCTATTGGTTGTCAGAAACAAGGAAACGATGTTAGCATCAGGGGTAATTTCGTTGCTGGAGGAAATGATCTCCAATCCCAGTTCTCAAGGACCTGCGGCAGCCCTGTATCTGAATCTCTCCTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

153

Amino Acids

16.81

Weight (kDa)

8.86

Isoelectric Point (pI)

59.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018906)

Species	Orthologous Gene IDs
malus_domestica	MD05G1035700.v1.1
pyrus_communis	pycom07g05700 pycom09g02060 pycom16g09840 pycom16g09900
rosa_chinensis	RchiOBHm_Chr2g0111811 RchiOBHm_Chr7g0222401
rosa_samantha	Rh1AG036700 Rh7BG340800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	431
AccII	CGCG	1 cut(s)	130
AciI	CCGC	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	185, 272, 314
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw21I	GWGCWC	1 cut(s)	289
ApeKI	GCWGC	2 cut(s)	125, 429
ApoI	RAATTY	1 cut(s)	266
AspA2I	CCTAGG	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	420
AvaII	GGWCC	1 cut(s)	420
AvrII	CCTAGG	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	2 cut(s)	137, 441
BciVI	GTATCC	1 cut(s)	161
BfaI	CTAG	2 cut(s)	135, 176
BfmI	CTRYAG	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	431
BfuI	GTATCC	1 cut(s)	161
BisI	GCNGC	3 cut(s)	126, 427, 430
BlnI	CCTAGG	1 cut(s)	134
BlsI	GCNGC	3 cut(s)	127, 428, 431
Bme18I	GGWCC	1 cut(s)	420
BmgT120I	GGNCC	1 cut(s)	420
BmrI	ACTGGG	2 cut(s)	255, 403
BmsI	GCATC	1 cut(s)	375
BmuI	ACTGGG	2 cut(s)	255, 403
BpiI	GAAGAC	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	250, 409
Bse3DI	GCAATG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	208
BseNI	ACTGG	2 cut(s)	250, 409
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	137, 441
Bsh1236I	CGCG	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	289
Bsp1286I	GDGCHC	2 cut(s)	261, 289
Bsp143I	GATC	2 cut(s)	17, 397
BspACI	CCGC	1 cut(s)	426
BspFNI	CGCG	1 cut(s)	130
BspMAI	CTGCAG	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	208
BsrI	ACTGG	2 cut(s)	250, 409
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	2 cut(s)	17, 397
BssT1I	CCWWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	32
BstAPI	GCANNNNNTGC	2 cut(s)	80, 284
BstDEI	CTNAG	2 cut(s)	192, 302
BstFNI	CGCG	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	2 cut(s)	20, 400
BstMBI	GATC	2 cut(s)	17, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 284
BstSFI	CTRYAG	1 cut(s)	47
BstSLI	GKGCMC	1 cut(s)	261
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	137, 441
BstV2I	GAAGAC	1 cut(s)	321
BsuI	GTATCC	1 cut(s)	161
BveI	ACCTGC	1 cut(s)	431
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	420
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	3 cut(s)	158, 239, 432
CviKI_1	RGCY	3 cut(s)	158, 239, 432
DdeI	CTNAG	2 cut(s)	192, 302
DpnI	GATC	2 cut(s)	19, 399
DpnII	GATC	2 cut(s)	17, 397
Eco130I	CCWWGG	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	420
EcoT14I	CCWWGG	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	134
FaeI	CATG	1 cut(s)	295
FaiI	YATR	3 cut(s)	163, 242, 293
FatI	CATG	1 cut(s)	291
Fnu4HI	GCNGC	3 cut(s)	126, 427, 430
Fsp4HI	GCNGC	3 cut(s)	126, 427, 430
FspBI	CTAG	2 cut(s)	135, 176
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	3 cut(s)	126, 427, 430
GsuI	CTGGAG	1 cut(s)	408
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	295
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	2 cut(s)	251, 443
Hpy166II	GTNNAC	2 cut(s)	28, 227
Hpy188I	TCNGA	2 cut(s)	345, 442
Hpy8I	GTNNAC	2 cut(s)	28, 227
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	5 cut(s)	49, 55, 69, 83, 93
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 284
HpyF3I	CTNAG	2 cut(s)	192, 302
Hsp92II	CATG	1 cut(s)	295
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	17, 397
LmnI	GCTCC	1 cut(s)	138
LpnPI	CCDG	7 cut(s)	132, 231, 355, 372, 422, 436, 447
Lsp1109I	GCAGC	2 cut(s)	137, 441
LweI	GCATC	1 cut(s)	375
MaeI	CTAG	2 cut(s)	135, 176
MalI	GATC	2 cut(s)	19, 399
MboI	GATC	2 cut(s)	17, 397
MboII	GAAGA	3 cut(s)	35, 194, 326
MhlI	GDGCHC	2 cut(s)	261, 289
MluCI	AATT	3 cut(s)	84, 266, 376
MnlI	CCTC	2 cut(s)	271, 383
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	80, 284
NdeII	GATC	2 cut(s)	17, 397
NlaIII	CATG	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	251, 443
PkrI	GCNGC	3 cut(s)	127, 428, 431
PpuMI	RGGWCCY	1 cut(s)	420
Psp5II	RGGWCCY	1 cut(s)	420
PspPI	GGNCC	1 cut(s)	420
PspPPI	RGGWCCY	1 cut(s)	420
PstI	CTGCAG	1 cut(s)	51
SatI	GCNGC	3 cut(s)	126, 427, 430
Sau3AI	GATC	2 cut(s)	17, 397
Sau96I	GGNCC	1 cut(s)	420
SduI	GDGCHC	2 cut(s)	261, 289
SetI	ASST	3 cut(s)	136, 160, 425
SfaNI	GCATC	1 cut(s)	375
SfcI	CTRYAG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
Sse9I	AATT	3 cut(s)	84, 266, 376
SsiI	CCGC	1 cut(s)	426
SspI	AATATT	1 cut(s)	108
SspMI	CTAG	2 cut(s)	135, 176
StyI	CCWWGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	32
TasI	AATT	3 cut(s)	84, 266, 376
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	2 cut(s)	251, 443
TseI	GCWGC	2 cut(s)	125, 429
TspDTI	ATGAA	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	420
XapI	RAATTY	1 cut(s)	266
XmaJI	CCTAGG	1 cut(s)	134
XspI	CTAG	2 cut(s)	135, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.