Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018906

Physical Location & Seq

Genomic Coordinates Forward (+)

23405589 .. 23409044

Gene Structure 3456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48538

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGGCAACCTTGTTACAGTCTGAGTCCAGACGCTTGTATTCTTGGTGGTGGGACAGTCACATTAGCCCAAAGAACTCAAAATGGCTTCAAGAAAATCTTACAGATATGGATGCTAAAGTCAAAGCAATGATCACCCTTGTAAAATGGTTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005911 GO:0008092 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0051015 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

51

Amino Acids

6.18

Weight (kDa)

9.3

Isoelectric Point (pI)

83.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIP1	PF07765	14 - 48	4.5e-14	KIP1-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018906)

Species	Orthologous Gene IDs
malus_domestica	MD05G1035700.v1.1
pyrus_communis	pycom07g05700 pycom09g02060 pycom16g09840 pycom16g09900
rosa_chinensis	RchiOBHm_Chr2g0111811 RchiOBHm_Chr7g0222401
rosa_samantha	Rh1AG036700 Rh7BG340800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	124
BclI	TGATCA	1 cut(s)	129
BmsI	GCATC	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	132
BssMI	GATC	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	18, 56
BstDEI	CTNAG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	115
CseI	GACGC	1 cut(s)	39
CviJI	RGCY	2 cut(s)	66, 85
CviKI_1	RGCY	2 cut(s)	66, 85
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
FaiI	YATR	1 cut(s)	107
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	1 cut(s)	65
FbaI	TGATCA	1 cut(s)	129
FokI	GGATG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	39
HinfI	GANTC	1 cut(s)	23
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	2 cut(s)	27, 89
HpyCH4III	ACNGT	2 cut(s)	18, 56
HpyF3I	CTNAG	1 cut(s)	21
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	129
LpnPI	CCDG	1 cut(s)	40
LweI	GCATC	1 cut(s)	100
MaeIII	GTNAC	2 cut(s)	12, 56
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	32
NdeII	GATC	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	56
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
Sau3AI	GATC	1 cut(s)	129
SchI	GAGTC	1 cut(s)	32
SetI	ASST	1 cut(s)	11
SfaNI	GCATC	1 cut(s)	100
SgeI	CNNG	6 cut(s)	22, 39, 46, 54, 101, 149
TaaI	ACNGT	2 cut(s)	18, 56
TseFI	GTSAC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.