Rh1AG036700

Kinase interacting (KIP1-like) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018906
Physical Location & Seq
Forward (+)
6426855 .. 6460031
33177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG036700.1

Sequence Viewer

Length: 225 bp
ATGGCAACCTTGTTACAGTCTGAGTCCAGACGCTTGTATTCTTGGTGGTGGGACAGTCACATTAGCCCAAAGAACTCAAAATGGCTTCAAGAAAATCTTACAGGTCTGACTGTGGACGCCAGGCACTGTTGGCTTTGGGATATTTTCCAGAGATATGAAATTGCATCTGTTTTGGTATGCTCTATTATCAATTATGACTTATGCTCAGTTTGGGTTACTGGGTAG

Protein Analysis

74

Amino Acids

8.82

Weight (kDa)

6.01

Isoelectric Point (pI)

68.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 14 - 36 1.3e-07 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018906)

Species Orthologous Gene IDs
malus_domestica MD05G1035700.v1.1
pyrus_communis pycom07g05700 pycom09g02060 pycom16g09840 pycom16g09900
rosa_chinensis RchiOBHm_Chr2g0111811 RchiOBHm_Chr7g0222401
rosa_samantha Rh1AG036700 Rh7BG340800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 117
AgsI TTSAA 1 cut(s) 89
AjnI CCWGG 1 cut(s) 119
AlwNI CAGNNNCTG 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 223
BseBI CCWGG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 12, 219
BseNI ACTGG 1 cut(s) 223
BslFI GGGAC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 65
BspCNI CTCAG 2 cut(s) 13, 218
BsrI ACTGG 1 cut(s) 223
BssNI GRCGYC 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 4 cut(s) 18, 56, 112, 128
BstACI GRCGYC 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 21, 205
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 124
CaiI CAGNNNCTG 1 cut(s) 126
CseI GACGC 2 cut(s) 39, 125
CviJI RGCY 3 cut(s) 66, 85, 133
CviKI_1 RGCY 3 cut(s) 66, 85, 133
DdeI CTNAG 2 cut(s) 21, 205
EcoRII CCWGG 1 cut(s) 119
FaiI YATR 4 cut(s) 156, 178, 195, 202
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FaqI GGGAC 1 cut(s) 65
HgaI GACGC 2 cut(s) 39, 125
Hin1I GRCGYC 1 cut(s) 117
HinfI GANTC 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 22, 108
Hpy188III TCNNGA 3 cut(s) 27, 89, 148
Hpy8I GTNNAC 1 cut(s) 115
HpyCH4III ACNGT 4 cut(s) 18, 56, 112, 128
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 2 cut(s) 21, 205
Hsp92I GRCGYC 1 cut(s) 117
LpnPI CCDG 6 cut(s) 40, 87, 106, 133, 161, 204
LweI GCATC 1 cut(s) 173
MaeIII GTNAC 3 cut(s) 12, 56, 214
MluCI AATT 2 cut(s) 159, 190
MlyI GAGTC 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 56
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PstNI CAGNNNCTG 1 cut(s) 126
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 121
SetI ASST 2 cut(s) 11, 106
SfaNI GCATC 1 cut(s) 173
SgeI CNNG 9 cut(s) 22, 39, 46, 54, 101, 114, 132, 133, 160
Sse9I AATT 2 cut(s) 159, 190
StyD4I CCNGG 1 cut(s) 119
TaaI ACNGT 4 cut(s) 18, 56, 112, 128
TasI AATT 2 cut(s) 159, 190
TscAI CASTG 1 cut(s) 131
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.