pycom16g10780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0017650
Physical Location & Seq
Forward (+)
7436930 .. 7437932
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 396 bp
ATGAGGTACCAACCAGTTCCCGGTGAACCTCCGCCTCCCCCAGAGTACGGGCAGCCGCCACCGCCACCTCCACCTCCACCAGAGTACGCGCCACCGCCACCTCCACCAGAGTATGAGGCACCGGCGCCACCTCCACCGGAGTACGGGCGACCACCACCTCCCCCACTGTATGCGCCACCGCCGCCACCACCAGACTACCCTCCCCCTCGTCCTCCTCCTCCTGGCCCTCCACCACCTGGCTATCAGGGTTACTTTTATCCTCCGCCGCCGCCAACCACGACCCCACCACCGCGGCCTTCAGTACAAGACAATGATGGCCCTGACTGCGGTTCAGTCCTTAAAGGCTGTTTGGCTGCAATTTGTTGCTGCTGGATATTGGACGCTTGCTGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

132

Amino Acids

13.86

Weight (kDa)

4.21

Isoelectric Point (pI)

109.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017650)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23050
malus_domestica MD12G1127700.v1.1 MD16G1127000.v1.1
pyrus_communis pycom16g10780
rosa_chinensis RchiOBHm_Chr4g0429321
rosa_laevigata RLG00000007081
rosa_roxburghii Rroxscaffold_5G00370930
rosa_samantha Rh4AG290700 Rh4BG296500 Rh4CG312200 Rh4DG293600
rosa_wichuraiana Rw4G025170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 6
AccB1I GGYRCC 3 cut(s) 6, 118, 124
AccB7I CCANNNNNTGG 1 cut(s) 236
AccII CGCG 2 cut(s) 89, 292
AcuI CTGAAG 1 cut(s) 282
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 5 cut(s) 8, 47, 86, 143, 303
AfiI CCNNNNNNNGG 6 cut(s) 20, 47, 143, 221, 236, 326
AjnI CCWGG 2 cut(s) 220, 235
AoxI GGCC 3 cut(s) 223, 293, 316
ApeKI GCWGC 4 cut(s) 52, 353, 366, 387
Asp718I GGTACC 1 cut(s) 6
AspLEI GCGC 3 cut(s) 91, 127, 175
AspS9I GGNCC 2 cut(s) 224, 317
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 35
BanI GGYRCC 3 cut(s) 6, 118, 124
BbvI GCAGC 4 cut(s) 64, 340, 353, 374
BccI CCATC 1 cut(s) 308
BciT130I CCWGG 2 cut(s) 222, 237
BcnI CCSGG 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 128
BisI GCNGC 9 cut(s) 53, 56, 182, 266, 269, 293, 354, 367, 388
BlsI GCNGC 9 cut(s) 54, 57, 183, 267, 270, 294, 355, 368, 389
Bme1390I CCNGG 3 cut(s) 21, 222, 237
BmgT120I GGNCC 2 cut(s) 224, 317
BmiI GGNNCC 3 cut(s) 8, 120, 126
BmrFI CCNGG 3 cut(s) 21, 222, 237
BpuMI CCSGG 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 290
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 6 cut(s) 20, 47, 143, 221, 236, 326
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 14
BseBI CCWGG 2 cut(s) 222, 237
BseDI CCNNGG 1 cut(s) 290
BseLI CCNNNNNNNGG 6 cut(s) 20, 47, 143, 221, 236, 326
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 2 cut(s) 204, 207
BseXI GCAGC 4 cut(s) 64, 340, 353, 374
Bsh1236I CGCG 2 cut(s) 89, 292
BshFI GGCC 3 cut(s) 225, 295, 318
BshNI GGYRCC 3 cut(s) 6, 118, 124
BsiSI CCGG 3 cut(s) 21, 122, 137
BslI CCNNNNNNNGG 6 cut(s) 20, 47, 143, 221, 236, 326
BsnI GGCC 3 cut(s) 225, 295, 318
BspANI GGCC 3 cut(s) 225, 295, 318
BspFNI CGCG 2 cut(s) 89, 292
BspLI GGNNCC 3 cut(s) 8, 120, 126
BspT107I GGYRCC 3 cut(s) 6, 118, 124
BsrFI RCCGGY 1 cut(s) 121
BsrI ACTGG 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 290
BssNI GRCGYC 1 cut(s) 125
Bst2UI CCWGG 2 cut(s) 222, 237
Bst4CI ACNGT 1 cut(s) 168
BstACI GRCGYC 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 1 cut(s) 393
BstDSI CCRYGG 1 cut(s) 290
BstFNI CGCG 2 cut(s) 89, 292
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 3 cut(s) 91, 127, 175
BstMWI GCNNNNNNNGC 3 cut(s) 61, 181, 324
BstNI CCWGG 2 cut(s) 222, 237
BstSCI CCNGG 3 cut(s) 19, 220, 235
BstUI CGCG 2 cut(s) 89, 292
BstV1I GCAGC 4 cut(s) 64, 340, 353, 374
BsuRI GGCC 3 cut(s) 225, 295, 318
BtgI CCRYGG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 385
CfoI GCGC 3 cut(s) 91, 127, 175
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 224, 317
Cfr42I CCGCGG 1 cut(s) 293
CseI GACGC 1 cut(s) 389
Csp6I GTAC 5 cut(s) 7, 46, 85, 142, 302
CviJI RGCY 7 cut(s) 55, 225, 240, 295, 318, 345, 353
CviKI_1 RGCY 7 cut(s) 55, 225, 240, 295, 318, 345, 353
CviQI GTAC 5 cut(s) 7, 46, 85, 142, 302
DdeI CTNAG 1 cut(s) 393
DinI GGCGCC 1 cut(s) 126
EciI GGCGGA 2 cut(s) 21, 252
Eco57I CTGAAG 1 cut(s) 282
EcoRII CCWGG 2 cut(s) 220, 235
EgeI GGCGCC 1 cut(s) 126
EheI GGCGCC 1 cut(s) 126
FaiI YATR 2 cut(s) 114, 171
Fnu4HI GCNGC 9 cut(s) 53, 56, 182, 266, 269, 293, 354, 367, 388
Fsp4HI GCNGC 9 cut(s) 53, 56, 182, 266, 269, 293, 354, 367, 388
GlaI GCGC 3 cut(s) 90, 126, 174
GluI GCNGC 9 cut(s) 53, 56, 182, 266, 269, 293, 354, 367, 388
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 3 cut(s) 225, 295, 318
HapII CCGG 3 cut(s) 21, 122, 137
HgaI GACGC 1 cut(s) 389
HhaI GCGC 3 cut(s) 91, 127, 175
Hin1I GRCGYC 1 cut(s) 125
Hin6I GCGC 3 cut(s) 89, 125, 173
HinP1I GCGC 3 cut(s) 89, 125, 173
HpaII CCGG 3 cut(s) 21, 122, 137
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 306
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4V TGCA 1 cut(s) 356
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 181, 324
HpyF3I CTNAG 1 cut(s) 393
Hsp92I GRCGYC 1 cut(s) 125
HspAI GCGC 3 cut(s) 89, 125, 173
KasI GGCGCC 1 cut(s) 124
KpnI GGTACC 1 cut(s) 10
KspI CCGCGG 1 cut(s) 293
Lsp1109I GCAGC 4 cut(s) 64, 340, 353, 374
MaeIII GTNAC 1 cut(s) 248
MluCI AATT 1 cut(s) 357
Mly113I GGCGCC 1 cut(s) 125
MseI TTAA 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 292
MspI CCGG 3 cut(s) 21, 122, 137
MspR9I CCNGG 3 cut(s) 21, 222, 237
MvaI CCWGG 2 cut(s) 222, 237
MvnI CGCG 2 cut(s) 89, 292
MwoI GCNNNNNNNGC 3 cut(s) 61, 181, 324
NarI GGCGCC 1 cut(s) 125
NciI CCSGG 1 cut(s) 21
NlaIV GGNNCC 3 cut(s) 8, 120, 126
PflMI CCANNNNNTGG 1 cut(s) 236
PkrI GCNGC 9 cut(s) 54, 57, 183, 267, 270, 294, 355, 368, 389
PluTI GGCGCC 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 220, 235
PspGI CCWGG 2 cut(s) 220, 235
PspN4I GGNNCC 3 cut(s) 8, 120, 126
PspPI GGNCC 2 cut(s) 224, 317
RsaI GTAC 5 cut(s) 8, 47, 86, 143, 303
RsaNI GTAC 5 cut(s) 7, 46, 85, 142, 302
SacII CCGCGG 1 cut(s) 293
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 9 cut(s) 53, 56, 182, 266, 269, 293, 354, 367, 388
Sau96I GGNCC 2 cut(s) 224, 317
ScrFI CCNGG 3 cut(s) 21, 222, 237
SetI ASST 8 cut(s) 8, 31, 70, 76, 103, 133, 160, 238
SfoI GGCGCC 1 cut(s) 126
Sfr303I CCGCGG 1 cut(s) 293
SgrAI CRCCGGYG 1 cut(s) 121
SgrBI CCGCGG 1 cut(s) 293
Sse9I AATT 1 cut(s) 357
SspDI GGCGCC 1 cut(s) 124
StyD4I CCNGG 3 cut(s) 19, 220, 235
TaaI ACNGT 1 cut(s) 168
TasI AATT 1 cut(s) 357
TatI WGTACW 1 cut(s) 301
TauI GCSGC 5 cut(s) 58, 184, 268, 271, 295
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 1 cut(s) 171
TseI GCWGC 4 cut(s) 52, 353, 366, 387
TspRI CASTG 1 cut(s) 171
Van91I CCANNNNNTGG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.