pycom16g11220

Transaldolase/Fructose-6-phosphate aldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011006
Physical Location & Seq
Forward (+)
7788273 .. 7790910
2638 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1332 bp
ATGGCGGCTTCCATTTCCAAGCTCTCCAATCCCACCCCTGCTTCCTCCTTGTCCTCAACCTTCAGCTCCAGAACGCCGCAGCCCAAGTGTTTGATCCGCCTCCTCGCCACCCCCGCCGCCACCTTCAACTCCAAACTCTCCTCCTCCAAGCTCTCCGTGCGAAGCAAGCCCTCTCTCCGGGGCTCTCTGGTTGTGAGGTGTTCTCAGAGTGATGGAAATGGAAGTCAGGTGAAGAGAACGTATCTGCATGATCTGTACGAGAAGGAAGGGCAGAGTCCCTGGTATGATAACCTTTGCCGGCCCGTGACGGATCTGCTTCCACTTATCGCAAGCGGGGTTCGAGGTGTAACCAGTAACCCAGCGATTTTCCAGAAAGCAATCTCAACTTCAAATGCTTACAATGATCAATTCAGGGAACTTATACATTCAGGAAAAGACATTGAAAGTGCATACTGGGAACTGGTGGTGAAGGACATTCAAGATGCTTGCAAACTTTTTGAGTCAATCTATGATCAAACTGATGCTGGTGATGGTTATGTTTCTGTTGAAGTTTCTCCCAGACTTGCTGATGACACTCAAGGGACTGTCGATGCTGCAAAATGGCTACATAAAGTAGTTGCTCGTCCTAATGTCTACATAAAAATTCCTGCAACTGCTCCTTGCGTTCCTTCAATTAAGGAAGTTATAGCAAATGGCATAAGTGTCAATGTGACTCTTATATTCTCACTCAGTAGATATGAGGCAGTGATGGATGCTTACTTGGATGGCCTTGAGGCTTCTGGACTGAGTGACCTTTCCAGAGTCACAAGTGTTGCTTCCTTCTTTGTCAGTAGGGTGGACACCCTCATTGACAAGATGCTTGAAAAGATTGGAACTCCAGAGGCCCTCGACCTTCGAGGAAAGGCTGCAGTAGCTCAAGCTGCTTTGGCATACCAACTCTACCAGAAGAAATTCTCTGGCCCTAGATGGGAGGCTTTGGTGAAAAAAGGTGCTAAGAAGCAGAGGCTGCTTTGGGCTTCAACTAGCGTCAAGAATCCTGCCTACCCCGATACTTTATATGTTGCTCCTCTCATAGGCCCTGATACGGTTTCAACCATGCCAGACCAAGCTCTCCAAGCATTTGTCGACCACGGCACAGTTTCAAGGACAATTGATTCAAATGTATCCGAGGCTGAAGGCATTTACAGTGCACTGGAGAAGTTAGGCATCGACTGGAGCTACGTTGGGAACCAACTCGAAATTGAGGGAGTGGATTCTTTCAAGAAGAGTTTCGACAGCCTGCTAGACACCCTGCAAGAGAAGGCCAACTCTCTTAATTTGGTTAGTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

444

Amino Acids

48.16

Weight (kDa)

6.47

Isoelectric Point (pI)

32.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAL_FSA PF00923 108 - 430 5e-77 Transaldolase/Fructose-6-phosphate aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13420
fragaria_vesca FvH4_4g22560 FvH4_4g22560 FvH4_4g22560
malus_domestica MD13G1131400.v1.1 MD16G1141700.v1.1
prunus_persica Prupe.1G214200_v2.0.a1 Prupe.1G214200_v2.0.a1
pyrus_communis pycom13g11470 pycom16g11220
rosa_chinensis RchiOBHm_Chr4g0428801
rosa_laevigata RLG00000007124
rosa_multiflora Rmu_ssc0000273.1_g000001
rosa_roxburghii Rroxscaffold_5G00370480
rosa_rugosa Rorug04G0229100 Rorug04G0229100
rosa_samantha Rh4AG286000 Rh4BG291800 Rh4CG307800
rosa_wichuraiana Rw4G024790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 633, 1125
AciI CCGC 6 cut(s) 5, 77, 97, 114, 117, 333
AclWI GGATC 2 cut(s) 88, 318
AcsI RAATTY 2 cut(s) 642, 950
AcuI CTGAAG 2 cut(s) 46, 1194
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 4 cut(s) 177, 967, 1073, 1084
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 7 cut(s) 22, 66, 151, 914, 920, 1109, 1218
AluI AGCT 7 cut(s) 22, 66, 151, 914, 920, 1109, 1218
Alw21I GWGCWC 1 cut(s) 1192
Alw44I GTGCAC 1 cut(s) 1188
AlwI GGATC 2 cut(s) 88, 318
AlwNI CAGNNNCTG 1 cut(s) 1006
AoxI GGCC 6 cut(s) 299, 766, 882, 958, 1075, 1302
ApaLI GTGCAC 1 cut(s) 1188
ApeKI GCWGC 5 cut(s) 79, 593, 905, 920, 1006
ApoI RAATTY 2 cut(s) 642, 950
Asp700I GAANNNNTTC 2 cut(s) 950, 1268
AspS9I GGNCC 4 cut(s) 300, 883, 959, 1076
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 4 cut(s) 241, 478, 539, 991
BaeGI GKGCMC 1 cut(s) 1192
BanII GRGCYC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 1192
BbvI GCAGC 5 cut(s) 91, 580, 892, 907, 993
BccI CCATC 5 cut(s) 206, 524, 742, 758, 960
BceAI ACGGC 1 cut(s) 1147
BciT130I CCWGG 1 cut(s) 280
BciVI GTATCC 1 cut(s) 1174
BclI TGATCA 2 cut(s) 403, 511
BcnI CCSGG 1 cut(s) 179
BfaI CTAG 3 cut(s) 963, 1023, 1283
BfmI CTRYAG 1 cut(s) 906
BfuI GTATCC 1 cut(s) 1174
BisI GCNGC 8 cut(s) 6, 77, 80, 117, 594, 906, 921, 1007
BlsI GCNGC 8 cut(s) 7, 78, 81, 118, 595, 907, 922, 1008
Bme1390I CCNGG 2 cut(s) 179, 280
BmgT120I GGNCC 4 cut(s) 300, 883, 959, 1076
BmiI GGNNCC 1 cut(s) 1229
BmrFI CCNGG 2 cut(s) 179, 280
BmrI ACTGGG 1 cut(s) 463
BmsI GCATC 6 cut(s) 472, 511, 580, 742, 846, 1215
BmuI ACTGGG 1 cut(s) 463
BplI GAGNNNNNCTC 2 cut(s) 187, 219
BpmI CTGGAG 4 cut(s) 52, 861, 1214, 1234
BpuEI CTTGAG 3 cut(s) 561, 791, 900
BpuMI CCSGG 1 cut(s) 179
BsaJI CCNNGG 4 cut(s) 178, 278, 1129, 1167
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 967, 1073, 1084
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 5 cut(s) 351, 458, 465, 1197, 1217
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 4 cut(s) 178, 278, 1129, 1167
BseGI GGATG 2 cut(s) 757, 769
BseLI CCNNNNNNNGG 4 cut(s) 177, 967, 1073, 1084
BseMII CTCAG 3 cut(s) 218, 742, 776
BseNI ACTGG 5 cut(s) 351, 458, 465, 1197, 1217
BseRI GAGGAG 4 cut(s) 92, 130, 133, 1056
BseSI GKGCMC 1 cut(s) 1192
BseXI GCAGC 5 cut(s) 91, 580, 892, 907, 993
BseYI CCCAGC 1 cut(s) 358
BshFI GGCC 6 cut(s) 301, 768, 884, 960, 1077, 1304
BsiHKAI GWGCWC 1 cut(s) 1192
BsiSI CCGG 2 cut(s) 178, 298
BslFI GGGAC 2 cut(s) 261, 595
BslI CCNNNNNNNGG 4 cut(s) 177, 967, 1073, 1084
BsmFI GGGAC 2 cut(s) 261, 595
BsnI GGCC 6 cut(s) 301, 768, 884, 960, 1077, 1304
Bsp1286I GDGCHC 2 cut(s) 185, 1192
Bsp143I GATC 5 cut(s) 93, 250, 310, 403, 511
BspACI CCGC 6 cut(s) 5, 77, 97, 114, 117, 333
BspANI GGCC 6 cut(s) 301, 768, 884, 960, 1077, 1304
BspCNI CTCAG 3 cut(s) 217, 741, 777
BspLI GGNNCC 1 cut(s) 1229
BspMAI CTGCAG 1 cut(s) 910
BspPI GGATC 2 cut(s) 88, 318
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 5 cut(s) 351, 458, 465, 1197, 1217
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 4 cut(s) 178, 278, 1129, 1167
BssMI GATC 5 cut(s) 93, 250, 310, 403, 511
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 4 cut(s) 586, 1087, 1138, 1187
Bst6I CTCTTC 2 cut(s) 227, 1259
BstAPI GCANNNNNTGC 1 cut(s) 1006
BstC8I GCNNGC 5 cut(s) 167, 299, 331, 487, 1280
BstDEI CTNAG 4 cut(s) 204, 728, 785, 993
BstDSI CCRYGG 1 cut(s) 1129
BstENI CCTNNNNNAGG 1 cut(s) 1071
BstF5I GGATG 2 cut(s) 757, 769
BstKTI GATC 5 cut(s) 96, 253, 313, 406, 514
BstMBI GATC 5 cut(s) 93, 250, 310, 403, 511
BstMWI GCNNNNNNNGC 8 cut(s) 113, 157, 166, 911, 920, 926, 1006, 1115
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 177, 278
BstSFI CTRYAG 1 cut(s) 906
BstSLI GKGCMC 1 cut(s) 1192
BstV1I GCAGC 5 cut(s) 91, 580, 892, 907, 993
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuI GTATCC 1 cut(s) 1174
BsuRI GGCC 6 cut(s) 301, 768, 884, 960, 1077, 1304
BtgI CCRYGG 1 cut(s) 1129
BtsCI GGATG 2 cut(s) 757, 769
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 3 cut(s) 750, 1190, 1192
Cac8I GCNNGC 5 cut(s) 167, 299, 331, 487, 1280
CaiI CAGNNNCTG 1 cut(s) 1006
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 4 cut(s) 300, 883, 959, 1076
CseI GACGC 1 cut(s) 1015
Csp6I GTAC 1 cut(s) 256
CviAII CATG 2 cut(s) 248, 1096
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 4 cut(s) 204, 728, 785, 993
DpnI GATC 5 cut(s) 95, 252, 312, 405, 513
DpnII GATC 5 cut(s) 93, 250, 310, 403, 511
Eam1104I CTCTTC 2 cut(s) 227, 1259
EarI CTCTTC 2 cut(s) 227, 1259
EciI GGCGGA 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 185
Eco57I CTGAAG 2 cut(s) 46, 1194
EcoNI CCTNNNNNAGG 1 cut(s) 1071
EcoO109I RGGNCCY 2 cut(s) 883, 1076
EcoRII CCWGG 1 cut(s) 278
EcoT38I GRGCYC 1 cut(s) 185
FaeI CATG 2 cut(s) 251, 1099
FalI AAGNNNNNCTT 2 cut(s) 799, 831
FaqI GGGAC 2 cut(s) 261, 595
FatI CATG 2 cut(s) 247, 1095
FauI CCCGC 2 cut(s) 121, 326
FbaI TGATCA 2 cut(s) 403, 511
FblI GTMKAC 2 cut(s) 633, 1125
Fnu4HI GCNGC 8 cut(s) 6, 77, 80, 117, 594, 906, 921, 1007
FokI GGATG 2 cut(s) 764, 776
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 8 cut(s) 6, 77, 80, 117, 594, 906, 921, 1007
FspBI CTAG 3 cut(s) 963, 1023, 1283
GluI GCNGC 8 cut(s) 6, 77, 80, 117, 594, 906, 921, 1007
GsaI CCCAGC 1 cut(s) 362
GsuI CTGGAG 4 cut(s) 52, 861, 1214, 1234
HaeIII GGCC 6 cut(s) 301, 768, 884, 960, 1077, 1304
HapII CCGG 2 cut(s) 178, 298
HgaI GACGC 1 cut(s) 1015
Hin1II CATG 2 cut(s) 251, 1099
HincII GTYRAC 1 cut(s) 1126
HindII GTYRAC 1 cut(s) 1126
HinfI GANTC 7 cut(s) 274, 500, 712, 801, 1033, 1154, 1253
HpaII CCGG 2 cut(s) 178, 298
HphI GGTGA 4 cut(s) 241, 478, 539, 991
Hpy166II GTNNAC 4 cut(s) 634, 838, 1126, 1190
Hpy188I TCNGA 2 cut(s) 207, 1168
Hpy188III TCNNGA 9 cut(s) 69, 370, 429, 479, 780, 798, 878, 1030, 1261
Hpy8I GTNNAC 4 cut(s) 634, 838, 1126, 1190
HpyCH4III ACNGT 4 cut(s) 586, 1087, 1138, 1187
HpyCH4IV ACGT 2 cut(s) 239, 1221
HpyCH4V TGCA 8 cut(s) 247, 449, 489, 596, 650, 908, 1190, 1294
HpyF10VI GCNNNNNNNGC 8 cut(s) 113, 157, 166, 911, 920, 926, 1006, 1115
HpyF3I CTNAG 4 cut(s) 204, 728, 785, 993
HpySE526I ACGT 2 cut(s) 239, 1221
Hsp92II CATG 2 cut(s) 251, 1099
KroI GCCGGC 1 cut(s) 297
KroNI GCCGGC 1 cut(s) 299
Ksp22I TGATCA 2 cut(s) 403, 511
Kzo9I GATC 5 cut(s) 93, 250, 310, 403, 511
LmnI GCTCC 4 cut(s) 71, 661, 1069, 1215
Lsp1109I GCAGC 5 cut(s) 91, 580, 892, 907, 993
LweI GCATC 6 cut(s) 472, 511, 580, 742, 846, 1215
MaeI CTAG 3 cut(s) 963, 1023, 1283
MaeII ACGT 2 cut(s) 239, 1221
MaeIII GTNAC 6 cut(s) 304, 346, 353, 709, 788, 802
MalI GATC 5 cut(s) 95, 252, 312, 405, 513
MboI GATC 5 cut(s) 93, 250, 310, 403, 511
MboII GAAGA 3 cut(s) 244, 958, 1276
MfeI CAATTG 1 cut(s) 1149
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 2 cut(s) 185, 1192
MluCI AATT 7 cut(s) 407, 642, 672, 950, 1149, 1239, 1315
MlyI GAGTC 4 cut(s) 283, 509, 706, 810
MroNI GCCGGC 1 cut(s) 297
MroXI GAANNNNTTC 2 cut(s) 950, 1268
MseI TTAA 2 cut(s) 675, 1314
MspI CCGG 2 cut(s) 178, 298
MspR9I CCNGG 2 cut(s) 179, 280
MunI CAATTG 1 cut(s) 1149
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 8 cut(s) 113, 157, 166, 911, 920, 926, 1006, 1115
NaeI GCCGGC 1 cut(s) 299
NciI CCSGG 1 cut(s) 179
NdeII GATC 5 cut(s) 93, 250, 310, 403, 511
NgoMIV GCCGGC 1 cut(s) 297
NlaIII CATG 2 cut(s) 251, 1099
NlaIV GGNNCC 1 cut(s) 1229
NmuCI GTSAC 4 cut(s) 304, 709, 788, 802
PdiI GCCGGC 1 cut(s) 299
PdmI GAANNNNTTC 2 cut(s) 950, 1268
PfeI GAWTC 3 cut(s) 1033, 1154, 1253
PkrI GCNGC 8 cut(s) 7, 78, 81, 118, 595, 907, 922, 1008
PleI GAGTC 4 cut(s) 282, 508, 706, 809
PpsI GAGTC 4 cut(s) 282, 508, 706, 809
Psp6I CCWGG 1 cut(s) 278
PspFI CCCAGC 1 cut(s) 358
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 1229
PspPI GGNCC 4 cut(s) 300, 883, 959, 1076
PstI CTGCAG 1 cut(s) 910
PstNI CAGNNNCTG 1 cut(s) 1006
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SalI GTCGAC 1 cut(s) 1124
SaqAI TTAA 2 cut(s) 675, 1314
SatI GCNGC 8 cut(s) 6, 77, 80, 117, 594, 906, 921, 1007
Sau3AI GATC 5 cut(s) 93, 250, 310, 403, 511
Sau96I GGNCC 4 cut(s) 300, 883, 959, 1076
SchI GAGTC 4 cut(s) 283, 509, 706, 810
ScrFI CCNGG 2 cut(s) 179, 280
SduI GDGCHC 2 cut(s) 185, 1192
SfaNI GCATC 6 cut(s) 472, 511, 580, 742, 846, 1215
SfcI CTRYAG 1 cut(s) 906
SmlI CTYRAG 3 cut(s) 576, 770, 915
SmoI CTYRAG 3 cut(s) 576, 770, 915
Sse9I AATT 7 cut(s) 407, 642, 672, 950, 1149, 1239, 1315
SsiI CCGC 6 cut(s) 5, 77, 97, 114, 117, 333
SspMI CTAG 3 cut(s) 963, 1023, 1283
StyD4I CCNGG 2 cut(s) 177, 278
TaaI ACNGT 4 cut(s) 586, 1087, 1138, 1187
TaiI ACGT 2 cut(s) 242, 1224
TaqI TCGA 8 cut(s) 340, 588, 888, 895, 1125, 1209, 1236, 1272
TasI AATT 7 cut(s) 407, 642, 672, 950, 1149, 1239, 1315
TauI GCSGC 3 cut(s) 8, 79, 119
TfiI GAWTC 3 cut(s) 1033, 1154, 1253
Tru1I TTAA 2 cut(s) 675, 1314
Tru9I TTAA 2 cut(s) 675, 1314
TscAI CASTG 3 cut(s) 750, 1192, 1197
TseFI GTSAC 4 cut(s) 304, 709, 788, 802
TseI GCWGC 5 cut(s) 79, 593, 905, 920, 1006
Tsp45I GTSAC 4 cut(s) 304, 709, 788, 802
TspGWI ACGGA 3 cut(s) 145, 323, 1317
TspRI CASTG 3 cut(s) 750, 1192, 1197
VneI GTGCAC 1 cut(s) 1188
XagI CCTNNNNNAGG 1 cut(s) 1071
XapI RAATTY 2 cut(s) 642, 950
XmiI GTMKAC 2 cut(s) 633, 1125
XmnI GAANNNNTTC 2 cut(s) 950, 1268
XspI CTAG 3 cut(s) 963, 1023, 1283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.