Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004891

Physical Location & Seq

Genomic Coordinates Forward (+)

8394572 .. 8395408

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCGCTCCTGTGGGCTTGTTGACCCTGGATGGGACCATGGTGTTGCTCAAGATGAGAGGAAGAAAAAGGTTAAATGCAATTACTGTGGAAAAATAGTTAGTGGTGGAATATACAGATTGAAGCAACATTTAGCCCGAGTTTCTGGAGAAGTTACTTATTGTGATAAAGCTCCGGACAATGTATACTTGAGTATGAAAGCAAATATGGAAGGAAGTCGTTCTCATAAGAAACCTAGGCTTTCCGATGATATTGGCCAAGCATATTTGAATTTTCAATCTAATGATGAAGAAGATGTGCATGTTGGCTATAGAAGCAAAGGAAAACAATTGGTGGGTGAGAGGAATTTAGCTATGAAATTGACTCCTCTTCGGTCGTTAGGGTATGTTGACCCTGGGTGGGAACACGGCGTTGCTCAGGATGAGAAAAAGAAAAAGGTGAAATGCAATTATTGCGAGAAAATAGTTAGTGGTGGTATCAATCGGTTTAAACAACATTTAGCTAGAATTCCTGGAGAAGTAGCACCTTGTAAACATGTTCCTGACAATGTCTATGTTAAAATAAAAGAGAATATGAAATGGCATCGTACTGGAAGGAGACAGAGACAACCAGATTCCAAGGACACGTCAAATTTTGATCCTCTGTCAGATAATGAAGACCAAGACGATGACCAAATGGAAGCTGTTCTGCCACATATGAGCCAGGAAAGATTGATCGATGGTGATAGGAGATTGGGGCAAAATGTGAGAAATACATTCTTGTCGCTGCCCAGTACTGGTTCTGAACCATTATTTATGAGAAAGATCAAGGCTCGATTCCCTGTTCGTGACAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

279

Amino Acids

31.73

Weight (kDa)

9.25

Isoelectric Point (pI)

33.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-BED	PF02892	11 - 46	4.9e-07	BED zinc finger
zf-BED	PF02892	133 - 168	1.8e-07	BED zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17450 AT3G17450
fragaria_vesca	FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491 FvH4_4g21491
malus_domestica	MD13G1139200.v1.1 MD16G1136600.v1.1
prunus_persica	Prupe.1G105600_v2.0.a1 Prupe.1G105600_v2.0.a1 Prupe.1G105600_v2.0.a1
pyrus_communis	pycom13g12110 pycom16g12020 pycom16g12030 pycom16g12040
rosa_chinensis	RchiOBHm_Chr4g0427461
rosa_laevigata	RLG00000007243
rosa_roxburghii	Rroxscaffold_5G00369110
rosa_rugosa	Rorug04G0208700
rosa_samantha	Rh4AG274500 Rh4BG280200 Rh4CG295200 Rh4DG277700
rosa_wichuraiana	Rw4G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	183
AccIII	TCCGGA	1 cut(s)	172
AclWI	GGATC	1 cut(s)	629
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	4 cut(s)	268, 343, 504, 628
AfaI	GTAC	2 cut(s)	586, 772
AfiI	CCNNNNNNNGG	3 cut(s)	31, 397, 773
AflIII	ACRYGT	2 cut(s)	532, 621
AgsI	TTSAA	3 cut(s)	121, 268, 275
AjiI	CACGTC	1 cut(s)	624
AjnI	CCWGG	4 cut(s)	25, 391, 508, 699
AluBI	AGCT	5 cut(s)	170, 350, 500, 680, 831
AluI	AGCT	5 cut(s)	170, 350, 500, 680, 831
Alw26I	GTCTC	2 cut(s)	589, 595
AlwI	GGATC	1 cut(s)	629
Ama87I	CYCGRG	1 cut(s)	135
Aor13HI	TCCGGA	1 cut(s)	172
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	763
ApoI	RAATTY	4 cut(s)	268, 343, 504, 628
Asp700I	GAANNNNTTC	2 cut(s)	217, 681
AspA2I	CCTAGG	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	3 cut(s)	347, 448, 731
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	34
AvrII	CCTAGG	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	660
BbvI	GCAGC	1 cut(s)	750
BccI	CCATC	2 cut(s)	24, 710
BceAI	ACGGC	1 cut(s)	421
BciT130I	CCWGG	4 cut(s)	27, 393, 510, 701
BcoDI	GTCTC	2 cut(s)	589, 595
BfaI	CTAG	2 cut(s)	234, 501
BfmI	CTRYAG	1 cut(s)	307
BisI	GCNGC	1 cut(s)	764
BlnI	CCTAGG	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	765
BmcAI	AGTACT	1 cut(s)	772
Bme1390I	CCNGG	4 cut(s)	27, 393, 510, 701
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	135
BmgBI	CACGTC	1 cut(s)	624
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	4 cut(s)	27, 393, 510, 701
BmrI	ACTGGG	1 cut(s)	762
BmsI	GCATC	1 cut(s)	589
BmuI	ACTGGG	1 cut(s)	762
BpiI	GAAGAC	1 cut(s)	660
BpmI	CTGGAG	2 cut(s)	165, 531
Bpu10I	CCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	2 cut(s)	33, 208
Bsa29I	ATCGAT	1 cut(s)	714
BsaJI	CCNNGG	6 cut(s)	25, 37, 233, 391, 392, 615
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 397, 773
Bse1I	ACTGG	3 cut(s)	592, 768, 778
BseAI	TCCGGA	1 cut(s)	172
BseBI	CCWGG	4 cut(s)	27, 393, 510, 701
BseCI	ATCGAT	1 cut(s)	714
BseDI	CCNNGG	6 cut(s)	25, 37, 233, 391, 392, 615
BseGI	GGATG	2 cut(s)	35, 424
BseLI	CCNNNNNNNGG	3 cut(s)	31, 397, 773
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	3 cut(s)	592, 768, 778
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	1 cut(s)	750
Bsh1285I	CGRYCG	1 cut(s)	374
BshFI	GGCC	1 cut(s)	255
BshVI	ATCGAT	1 cut(s)	714
BsiEI	CGRYCG	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	3 cut(s)	31, 397, 773
BsmAI	GTCTC	2 cut(s)	589, 595
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	255
BsoBI	CYCGRG	1 cut(s)	135
Bsp13I	TCCGGA	1 cut(s)	172
Bsp143I	GATC	3 cut(s)	634, 711, 801
Bsp19I	CCATGG	1 cut(s)	37
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	1 cut(s)	427
BspDI	ATCGAT	1 cut(s)	714
BspEI	TCCGGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	629
BsrI	ACTGG	3 cut(s)	592, 768, 778
BssECI	CCNNGG	6 cut(s)	25, 37, 233, 391, 392, 615
BssMI	GATC	3 cut(s)	634, 711, 801
BssNAI	GTATAC	1 cut(s)	184
BssT1I	CCWWGG	3 cut(s)	37, 233, 615
Bst1107I	GTATAC	1 cut(s)	184
Bst2UI	CCWGG	4 cut(s)	27, 393, 510, 701
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	1 cut(s)	372
BstAPI	GCANNNNNTGC	1 cut(s)	450
BstDEI	CTNAG	1 cut(s)	414
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	35, 424
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	637, 714, 804
BstMAI	GTCTC	2 cut(s)	589, 595
BstMBI	GATC	3 cut(s)	634, 711, 801
BstMCI	CGRYCG	1 cut(s)	374
BstMWI	GCNNNNNNNGC	2 cut(s)	312, 450
BstNI	CCWGG	4 cut(s)	27, 393, 510, 701
BstNSI	RCATGY	2 cut(s)	302, 536
BstSCI	CCNGG	4 cut(s)	25, 391, 508, 699
BstSFI	CTRYAG	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	750
BstV2I	GAAGAC	1 cut(s)	660
BstZ17I	GTATAC	1 cut(s)	184
Bsu15I	ATCGAT	1 cut(s)	714
BsuRI	GGCC	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	714
BtgI	CCRYGG	1 cut(s)	37
BtrI	CACGTC	1 cut(s)	624
BtsCI	GGATG	2 cut(s)	35, 424
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	34
ClaI	ATCGAT	1 cut(s)	714
Csp6I	GTAC	2 cut(s)	585, 771
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	3 cut(s)	38, 299, 533
CviQI	GTAC	2 cut(s)	585, 771
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	3 cut(s)	636, 713, 803
DpnII	GATC	3 cut(s)	634, 711, 801
DraI	TTTAAA	1 cut(s)	487
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	3 cut(s)	37, 233, 615
Eco47I	GGWCC	1 cut(s)	34
Eco88I	CYCGRG	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	504
EcoRII	CCWGG	4 cut(s)	25, 391, 508, 699
EcoT14I	CCWWGG	3 cut(s)	37, 233, 615
ErhI	CCWWGG	3 cut(s)	37, 233, 615
FaeI	CATG	3 cut(s)	41, 302, 536
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	3 cut(s)	37, 298, 532
FauNDI	CATATG	1 cut(s)	693
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	764
FokI	GGATG	2 cut(s)	42, 431
Fsp4HI	GCNGC	1 cut(s)	764
FspBI	CTAG	2 cut(s)	234, 501
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	764
GsuI	CTGGAG	2 cut(s)	165, 531
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	173
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	41, 302, 536
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	2 cut(s)	22, 388
HindII	GTYRAC	2 cut(s)	22, 388
HinfI	GANTC	3 cut(s)	361, 611, 813
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	3 cut(s)	347, 448, 731
Hpy166II	GTNNAC	4 cut(s)	22, 184, 388, 530
Hpy188I	TCNGA	3 cut(s)	244, 646, 781
Hpy188III	TCNNGA	6 cut(s)	50, 144, 173, 416, 539, 824
Hpy8I	GTNNAC	4 cut(s)	22, 184, 388, 530
HpyAV	CCTTC	2 cut(s)	203, 585
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4IV	ACGT	1 cut(s)	623
HpyCH4V	TGCA	3 cut(s)	78, 298, 444
HpyF10VI	GCNNNNNNNGC	2 cut(s)	312, 450
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	1 cut(s)	623
Hsp92II	CATG	3 cut(s)	41, 302, 536
HspAI	GCGC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	634, 711, 801
LmnI	GCTCC	2 cut(s)	11, 175
Lsp1109I	GCAGC	1 cut(s)	750
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	2 cut(s)	234, 501
MaeII	ACGT	1 cut(s)	623
MaeIII	GTNAC	2 cut(s)	151, 824
MalI	GATC	3 cut(s)	636, 713, 803
MboI	GATC	3 cut(s)	634, 711, 801
MboII	GAAGA	5 cut(s)	73, 299, 302, 359, 665
MfeI	CAATTG	1 cut(s)	326
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	8 cut(s)	79, 268, 326, 343, 356, 445, 504, 628
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	355
MnlI	CCTC	4 cut(s)	51, 333, 375, 648
Mox20I	TGGCCA	1 cut(s)	255
MroI	TCCGGA	1 cut(s)	172
MroXI	GAANNNNTTC	2 cut(s)	217, 681
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	3 cut(s)	72, 486, 555
Msp20I	TGGCCA	1 cut(s)	255
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	4 cut(s)	27, 393, 510, 701
MssI	GTTTAAAC	1 cut(s)	487
MunI	CAATTG	1 cut(s)	326
MvaI	CCWGG	4 cut(s)	27, 393, 510, 701
MwoI	GCNNNNNNNGC	2 cut(s)	312, 450
NcoI	CCATGG	1 cut(s)	37
NdeI	CATATG	1 cut(s)	693
NdeII	GATC	3 cut(s)	634, 711, 801
NlaIII	CATG	3 cut(s)	41, 302, 536
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	824
NspI	RCATGY	2 cut(s)	302, 536
PasI	CCCWGGG	1 cut(s)	392
PciI	ACATGT	1 cut(s)	532
PdmI	GAANNNNTTC	2 cut(s)	217, 681
PfeI	GAWTC	2 cut(s)	611, 813
PflFI	GACNNNGTC	1 cut(s)	545
PfoI	TCCNGGA	1 cut(s)	508
PkrI	GCNGC	1 cut(s)	765
PleI	GAGTC	1 cut(s)	355
PmeI	GTTTAAAC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	355
PscI	ACATGT	1 cut(s)	532
Psp6I	CCWGG	4 cut(s)	25, 391, 508, 699
PspGI	CCWGG	4 cut(s)	25, 391, 508, 699
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	34
PsyI	GACNNNGTC	1 cut(s)	545
RsaI	GTAC	2 cut(s)	586, 772
RsaNI	GTAC	2 cut(s)	585, 771
SaqAI	TTAA	3 cut(s)	72, 486, 555
SatI	GCNGC	1 cut(s)	764
Sau3AI	GATC	3 cut(s)	634, 711, 801
Sau96I	GGNCC	1 cut(s)	34
ScaI	AGTACT	1 cut(s)	772
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	4 cut(s)	27, 393, 510, 701
SfaNI	GCATC	1 cut(s)	589
SfcI	CTRYAG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	48, 187
SmoI	CTYRAG	2 cut(s)	48, 187
Sse9I	AATT	8 cut(s)	79, 268, 326, 343, 356, 445, 504, 628
SspMI	CTAG	2 cut(s)	234, 501
StyD4I	CCNGG	4 cut(s)	25, 391, 508, 699
StyI	CCWWGG	3 cut(s)	37, 233, 615
TaaI	ACNGT	1 cut(s)	86
TaiI	ACGT	1 cut(s)	626
TaqI	TCGA	2 cut(s)	714, 811
TaqII	GACCGA	1 cut(s)	360
TasI	AATT	8 cut(s)	79, 268, 326, 343, 356, 445, 504, 628
TatI	WGTACW	1 cut(s)	770
TfiI	GAWTC	2 cut(s)	611, 813
Tru1I	TTAA	3 cut(s)	72, 486, 555
Tru9I	TTAA	3 cut(s)	72, 486, 555
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	1 cut(s)	763
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	5 cut(s)	209, 300, 368, 587, 666
Tth111I	GACNNNGTC	1 cut(s)	545
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	4 cut(s)	268, 343, 504, 628
XceI	RCATGY	2 cut(s)	302, 536
XmaJI	CCTAGG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	2 cut(s)	217, 681
XspI	CTAG	2 cut(s)	234, 501
ZrmI	AGTACT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.