Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007390

Physical Location & Seq

Genomic Coordinates Reverse (-)

13746856 .. 13747329

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAAGGGTCTGATGCTCCAAAAGTCGATTGTTGTCCGCCTGCTGGAGGACTTTGCATCAAGAAAGGCAACCAAAGATCTGGGCTACTATCTTGCTCTCACAACTCTGGAGAGTGTAGGAGAGGGCAAAGTGAGGCAGCAGACTGGGGATGTTCTGTTTCCAGTTGTTTTTAGCGCTGTTACCTTCAAGCTTTTCAGGGGAGAGATCGCAGAGGGTGTAGTTCACAAAGTTCTGAAGCATGGAGTTTTCCTCAGTTGCGGCCCAGTTGAAAACATGTATCTCTCGAAGATGAAAATGCCGGATTACGATTATGTGCCTGGGGAGAATCCTGTATTCATGAACAGGAAGATGTCAAAAATTGAGAAAGGCACCACCGTACGCTTCATCGTCATCGGGACTAAGTGGCTTGAGGCACAAAGGGAATTTCAGGCTTTGGTTGGCTTGCATGCAGATTATCTAGGACCAGTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

SHS2_Rpb7-N

Protein Analysis

158

Amino Acids

17.62

Weight (kDa)

9.3

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14660 AT4G14660 AT4G14660
fragaria_vesca	FvH4_4g12050 FvH4_4g12050
malus_domestica	MD16G1207700.v1.1
prunus_persica	Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1 Prupe.1G030000_v2.0.a1
pyrus_communis	pycom13g17890 pycom16g17510
rosa_chinensis	RchiOBHm_Chr4g0390271 RchiOBHm_Chr4g0390761
rosa_laevigata	RLG00000009929
rosa_multiflora	Rmu_sc0004432.1_g000009 Rmu_sc0014620.1_g000003
rosa_roxburghii	Rroxscaffold_5G00336390
rosa_rugosa	Rorug03G0328900
rosa_samantha	Rh4AG031300 Rh4AG033100 Rh4BG025300 Rh4CG034300 Rh4DG026500
rosa_wichuraiana	Rw4G002490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	368
AciI	CCGC	2 cut(s)	37, 258
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	1 cut(s)	378
AfeI	AGCGCT	1 cut(s)	175
AfiI	CCNNNNNNNGG	2 cut(s)	43, 46
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	187, 269
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Aor51HI	AGCGCT	1 cut(s)	175
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	2 cut(s)	260, 461
AvaII	GGWCC	1 cut(s)	461
BanI	GGYRCC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	318
BfaI	CTAG	1 cut(s)	458
BfoI	RGCGCY	1 cut(s)	177
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	2 cut(s)	137, 259
BlsI	GCNGC	2 cut(s)	138, 260
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	2 cut(s)	260, 461
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	318
BmrI	ACTGGG	2 cut(s)	153, 257
BmsI	GCATC	2 cut(s)	3, 65
BmuI	ACTGGG	2 cut(s)	153, 257
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
BpmI	CTGGAG	2 cut(s)	65, 128
BpuEI	CTTGAG	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 46
Bse1I	ACTGG	4 cut(s)	148, 161, 263, 464
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	43, 46
BseMII	CTCAG	1 cut(s)	265
BseNI	ACTGG	4 cut(s)	148, 161, 263, 464
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	261
BshNI	GGYRCC	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	299
BsiWI	CGTACG	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	2 cut(s)	43, 46
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	76, 204
BspACI	CCGC	2 cut(s)	37, 258
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	1 cut(s)	264
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	368
BsrI	ACTGG	4 cut(s)	148, 161, 263, 464
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	2 cut(s)	76, 204
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	376
BstC8I	GCNNGC	3 cut(s)	41, 443, 447
BstDEI	CTNAG	3 cut(s)	251, 399, 471
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	154
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	2 cut(s)	79, 207
BstMBI	GATC	2 cut(s)	76, 204
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	2 cut(s)	277, 449
BstSCI	CCNGG	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	154
Cac8I	GCNNGC	3 cut(s)	41, 443, 447
CciI	TCATGA	1 cut(s)	336
CfoI	GCGC	1 cut(s)	176
Cfr13I	GGNCC	2 cut(s)	260, 461
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	4 cut(s)	239, 274, 337, 446
CviJI	RGCY	6 cut(s)	84, 190, 261, 406, 431, 441
CviKI_1	RGCY	6 cut(s)	84, 190, 261, 406, 431, 441
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	3 cut(s)	251, 399, 471
DpnI	GATC	2 cut(s)	78, 206
DpnII	GATC	2 cut(s)	76, 204
EciI	GGCGGA	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	461
Eco47III	AGCGCT	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	254
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	316
FaeI	CATG	4 cut(s)	242, 277, 340, 449
FaiI	YATR	5 cut(s)	240, 275, 312, 338, 447
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	4 cut(s)	238, 273, 336, 445
Fnu4HI	GCNGC	2 cut(s)	137, 259
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	2 cut(s)	137, 259
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	2 cut(s)	137, 259
GsuI	CTGGAG	2 cut(s)	65, 128
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	1 cut(s)	299
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	4 cut(s)	242, 277, 340, 449
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	12, 234
Hpy188III	TCNNGA	5 cut(s)	60, 107, 283, 337, 394
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4V	TGCA	3 cut(s)	56, 445, 449
HpyF3I	CTNAG	3 cut(s)	251, 399, 471
Hsp92II	CATG	4 cut(s)	242, 277, 340, 449
HspAI	GCGC	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	76, 204
LmnI	GCTCC	1 cut(s)	21
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	2 cut(s)	3, 65
MaeI	CTAG	1 cut(s)	458
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	2 cut(s)	78, 206
MboI	GATC	2 cut(s)	76, 204
MboII	GAAGA	2 cut(s)	298, 358
MflI	RGATCY	1 cut(s)	76
MluCI	AATT	2 cut(s)	357, 422
MnlI	CCTC	6 cut(s)	40, 115, 126, 205, 260, 403
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	318
NdeII	GATC	2 cut(s)	76, 204
NlaIII	CATG	4 cut(s)	242, 277, 340, 449
NlaIV	GGNNCC	1 cut(s)	370
NspI	RCATGY	2 cut(s)	277, 449
PaeI	GCATGC	1 cut(s)	449
PagI	TCATGA	1 cut(s)	336
PciI	ACATGT	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	325
Pfl23II	CGTACG	1 cut(s)	376
PkrI	GCNGC	2 cut(s)	138, 260
PscI	ACATGT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspLI	CGTACG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	2 cut(s)	260, 461
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
SatI	GCNGC	2 cut(s)	137, 259
Sau3AI	GATC	2 cut(s)	76, 204
Sau96I	GGNCC	2 cut(s)	260, 461
ScrFI	CCNGG	1 cut(s)	318
SetI	ASST	2 cut(s)	185, 192
SfaNI	GCATC	2 cut(s)	3, 65
SinI	GGWCC	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SphI	GCATGC	1 cut(s)	449
Sse9I	AATT	2 cut(s)	357, 422
SsiI	CCGC	2 cut(s)	37, 258
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	376
TaqI	TCGA	2 cut(s)	26, 284
TasI	AATT	2 cut(s)	357, 422
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	325
TseI	GCWGC	1 cut(s)	136
TspDTI	ATGAA	5 cut(s)	17, 305, 325, 353, 373
VpaK11BI	GGWCC	1 cut(s)	461
XagI	CCTNNNNNAGG	1 cut(s)	44
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	2 cut(s)	277, 449
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.