pycom16g18400
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
15000766 .. 15002324
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 474 bp
ATGGTAGTTTGTGGAATAGAGGAGAAAGATAAAGAGAAGGCAGAGAGAATGGTAAATGTAGCTATGTGGTGTGTCCAGTATAAGCAAGAGGATAGGCCTTCAATGAGTGTTGTGGTGAAAATGTTGGAAGGAGCAATGGAGATTCCTAGACCTTCAACTAACCCTTTTCAGCACTTGATGTCGGACACTCCATACCCTGCTGCACCCGTCTATGATACGCCAAATCCAACAACTAGTACCAGCAGCGATTTTTGTTCAGTTCCTTCTCAAACTGTAAATGGATATAGAGCCGTAGATGATACTCCTATCATGAAGAAATATGAGATTGAAATAGCCAAAAGGAAACCAAACTGTGACCAACCAAGTAGAAAAAAACCATACACACAGGATCCTGTTAGAAATCAAAAACCTAATACACGAAGAATGGAGTCCATTGTTTTGAAAACCAGTACCTCCACGATAACTATAAATTGA

Protein Analysis

158

Amino Acids

17.82

Weight (kDa)

8.64

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 383, 396
AfaI GTAC 2 cut(s) 238, 451
AgsI TTSAA 4 cut(s) 102, 156, 329, 442
AhlI ACTAGT 1 cut(s) 233
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
AlwI GGATC 2 cut(s) 383, 396
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 200, 243
AsuHPI GGTGA 1 cut(s) 127
BamHI GGATCC 1 cut(s) 388
BbvI GCAGC 2 cut(s) 187, 255
BceAI ACGGC 1 cut(s) 275
BcuI ACTAGT 1 cut(s) 233
BfaI CTAG 2 cut(s) 147, 234
BisI GCNGC 2 cut(s) 201, 244
BlsI GCNGC 2 cut(s) 202, 245
BmiI GGNNCC 1 cut(s) 390
Bse1I ACTGG 2 cut(s) 76, 447
Bse3DI GCAATG 1 cut(s) 141
BseMI GCAATG 1 cut(s) 141
BseNI ACTGG 2 cut(s) 76, 447
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 187, 255
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 1 cut(s) 97
BsnI GGCC 1 cut(s) 97
Bsp143I GATC 1 cut(s) 388
BspANI GGCC 1 cut(s) 97
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 390
BspPI GGATC 2 cut(s) 383, 396
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 2 cut(s) 76, 447
BssMI GATC 1 cut(s) 388
Bst4CI ACNGT 2 cut(s) 274, 353
BstKTI GATC 1 cut(s) 391
BstMBI GATC 1 cut(s) 388
BstV1I GCAGC 2 cut(s) 187, 255
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 1 cut(s) 97
CciI TCATGA 1 cut(s) 309
Csp6I GTAC 2 cut(s) 237, 450
CviAII CATG 1 cut(s) 310
CviJI RGCY 4 cut(s) 62, 97, 290, 335
CviKI_1 RGCY 4 cut(s) 62, 97, 290, 335
CviQI GTAC 2 cut(s) 237, 450
DpnI GATC 1 cut(s) 390
DpnII GATC 1 cut(s) 388
Eco147I AGGCCT 1 cut(s) 97
FaeI CATG 1 cut(s) 313
FaiI YATR 9 cut(s) 65, 81, 193, 213, 285, 311, 321, 379, 467
FatI CATG 1 cut(s) 309
Fnu4HI GCNGC 2 cut(s) 201, 244
Fsp4HI GCNGC 2 cut(s) 201, 244
FspBI CTAG 2 cut(s) 147, 234
GluI GCNGC 2 cut(s) 201, 244
HaeIII GGCC 1 cut(s) 97
Hin1II CATG 1 cut(s) 313
HinfI GANTC 2 cut(s) 142, 428
HphI GGTGA 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 310
HpyAV CCTTC 5 cut(s) 31, 108, 122, 162, 273
HpyCH4III ACNGT 2 cut(s) 274, 353
HpyCH4V TGCA 1 cut(s) 203
Hsp92II CATG 1 cut(s) 313
Kzo9I GATC 1 cut(s) 388
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 6 cut(s) 89, 210, 253, 371, 405, 460
Lsp1109I GCAGC 2 cut(s) 187, 255
MaeI CTAG 2 cut(s) 147, 234
MaeIII GTNAC 1 cut(s) 353
MalI GATC 1 cut(s) 390
MboI GATC 1 cut(s) 388
MboII GAAGA 2 cut(s) 325, 432
MflI RGATCY 1 cut(s) 388
MluCI AATT 1 cut(s) 469
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 3 cut(s) 105, 162, 251
MnlI CCTC 3 cut(s) 13, 82, 463
NdeII GATC 1 cut(s) 388
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 1 cut(s) 353
PagI TCATGA 1 cut(s) 309
PceI AGGCCT 1 cut(s) 97
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 2 cut(s) 202, 245
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 390
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 2 cut(s) 238, 451
RsaNI GTAC 2 cut(s) 237, 450
SatI GCNGC 2 cut(s) 201, 244
Sau3AI GATC 1 cut(s) 388
SchI GAGTC 1 cut(s) 437
SetI ASST 4 cut(s) 64, 154, 412, 455
SpeI ACTAGT 1 cut(s) 233
Sse9I AATT 1 cut(s) 469
SseBI AGGCCT 1 cut(s) 97
SspMI CTAG 2 cut(s) 147, 234
StuI AGGCCT 1 cut(s) 97
TaaI ACNGT 2 cut(s) 274, 353
TasI AATT 1 cut(s) 469
TfiI GAWTC 1 cut(s) 142
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 2 cut(s) 200, 243
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 1 cut(s) 326
XspI CTAG 2 cut(s) 147, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.