Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0018094

Physical Location & Seq

Genomic Coordinates Forward (+)

22977828 .. 22978755

Gene Structure 928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG106800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTTGGAAGGAGAATTTGAGATTCCTAGACCTTCAATTAATCCATTTCAGCACTTGATGCCAGACAATCCTATCATGGCAGCATATAGCACTAGTGCCTTCGACACGGATTCCTCTCAAACAATTACTGGATGTAACATTAACAATGAGAGTATGTATGCATCCCCTCTCGCATTCCATCAAATGATGTTGGAATTTCTTGAAAGTGTCACAATAGTAGTGTTAGACAACAACCAGGCATGCTTGAAATGGTGGTACAACTCAAAGAGTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

91

Amino Acids

10.28

Weight (kDa)

4.31

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018094)

Species	Orthologous Gene IDs
malus_domestica	MD13G1250000.v1.1 MD16G1220200.v1.1
pyrus_communis	pycom16g18400
rosa_samantha	Rh4AG106600 Rh4AG106800 Rh4AG106900 Rh4CG115600 Rh4CG115700 Rh4CG115800 Rh4DG098400 Rh4DG098700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	14, 194
AfaI	GTAC	1 cut(s)	257
AgsI	TTSAA	3 cut(s)	36, 203, 247
AhlI	ACTAGT	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	234
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	2 cut(s)	14, 194
AseI	ATTAAT	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	236
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	2 cut(s)	27, 93
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	236
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	2 cut(s)	48, 170
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	236
BseGI	GGATG	2 cut(s)	137, 161
BseNI	ACTGG	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	236
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	241
BstF5I	GGATG	2 cut(s)	137, 161
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	92
BtsCI	GGATG	2 cut(s)	137, 161
Cac8I	GCNNGC	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	2 cut(s)	76, 240
CviQI	GTAC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	234
EcoT22I	ATGCAT	1 cut(s)	163
FaeI	CATG	2 cut(s)	79, 243
FaiI	YATR	6 cut(s)	77, 85, 87, 155, 159, 241
FatI	CATG	2 cut(s)	75, 239
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	2 cut(s)	144, 148
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	2 cut(s)	27, 93
GluI	GCNGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	79, 243
HinfI	GANTC	2 cut(s)	22, 110
Hpy188III	TCNNGA	1 cut(s)	200
HpyAV	CCTTC	2 cut(s)	42, 109
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
Hsp92II	CATG	2 cut(s)	79, 243
LpnPI	CCDG	4 cut(s)	75, 114, 221, 248
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	2 cut(s)	48, 170
MaeI	CTAG	2 cut(s)	27, 93
MaeIII	GTNAC	2 cut(s)	134, 208
MluCI	AATT	4 cut(s)	14, 36, 123, 194
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	2 cut(s)	124, 177
Mph1103I	ATGCAT	1 cut(s)	163
MseI	TTAA	2 cut(s)	39, 141
MspR9I	CCNGG	1 cut(s)	236
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	58
NlaIII	CATG	2 cut(s)	79, 243
NmuCI	GTSAC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	163
NspI	RCATGY	1 cut(s)	243
PaeI	GCATGC	1 cut(s)	243
PctI	GAATGC	1 cut(s)	173
PfeI	GAWTC	2 cut(s)	22, 110
PkrI	GCNGC	1 cut(s)	82
PshBI	ATTAAT	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	39, 141
SatI	GCNGC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	1 cut(s)	34
SfaNI	GCATC	2 cut(s)	48, 170
SpeI	ACTAGT	1 cut(s)	92
SphI	GCATGC	1 cut(s)	243
Sse9I	AATT	4 cut(s)	14, 36, 123, 194
SspMI	CTAG	2 cut(s)	27, 93
StyD4I	CCNGG	1 cut(s)	234
TaqI	TCGA	1 cut(s)	102
TasI	AATT	4 cut(s)	14, 36, 123, 194
TfiI	GAWTC	2 cut(s)	22, 110
Tru1I	TTAA	2 cut(s)	39, 141
Tru9I	TTAA	2 cut(s)	39, 141
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	208
TspGWI	ACGGA	1 cut(s)	122
VspI	ATTAAT	1 cut(s)	39
XapI	RAATTY	2 cut(s)	14, 194
XceI	RCATGY	1 cut(s)	243
XspI	CTAG	2 cut(s)	27, 93
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.