Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0018094

Physical Location & Seq

Genomic Coordinates Forward (+)

22938325 .. 22938895

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG106600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCTGGAAGGAGCACTTGAAATTCCTAAGCCTTCAATTAACCCATTTCAGTACTTGATGCCAGGTACTCCAATCGTGGCTGCATTTCCTGCATATAGCACTAGTGCATTCGACACTGATTCCTCTCAAAAGATAACCGGACATAGCTTCTTGCGTGGTACTCCTATCATGAGGAGATACGAAATTGAAATAGCATCTAATTCTGTGATAGAAGTTCAAACCCACAGCAACATTAGCTGGCGTAAGTGGAAGTTGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

86

Amino Acids

9.64

Weight (kDa)

8.11

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018094)

Species	Orthologous Gene IDs
malus_domestica	MD13G1250000.v1.1 MD16G1220200.v1.1
pyrus_communis	pycom16g18400
rosa_samantha	Rh4AG106600 Rh4AG106800 Rh4AG106900 Rh4CG115600 Rh4CG115700 Rh4CG115800 Rh4DG098400 Rh4DG098700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	21
AfaI	GTAC	3 cut(s)	53, 67, 160
AgsI	TTSAA	4 cut(s)	20, 36, 188, 218
AhlI	ACTAGT	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	2 cut(s)	147, 237
AluI	AGCT	2 cut(s)	147, 237
Alw21I	GWGCWC	1 cut(s)	16
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	63
BcuI	ACTAGT	1 cut(s)	101
BfaI	CTAG	2 cut(s)	102, 259
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmcAI	AGTACT	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	2 cut(s)	48, 203
Bpu10I	CCTNAGC	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	257
BspHI	TCATGA	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 234
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	239
CciI	TCATGA	1 cut(s)	168
Csp6I	GTAC	3 cut(s)	52, 66, 159
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	5 cut(s)	31, 80, 147, 237, 257
CviKI_1	RGCY	5 cut(s)	31, 80, 147, 237, 257
CviQI	GTAC	3 cut(s)	52, 66, 159
DdeI	CTNAG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	61
FaeI	CATG	1 cut(s)	172
FaiI	YATR	4 cut(s)	94, 96, 144, 170
FalI	AAGNNNNNCTT	1 cut(s)	32
FatI	CATG	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	2 cut(s)	102, 259
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	1 cut(s)	172
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	138
Hpy188III	TCNNGA	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	83, 92, 107
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 234
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	5 cut(s)	48, 75, 102, 151, 223
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	2 cut(s)	48, 203
MaeI	CTAG	2 cut(s)	102, 259
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	4 cut(s)	21, 36, 183, 199
MnlI	CCTC	2 cut(s)	133, 165
MseI	TTAA	1 cut(s)	39
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	89, 234
NlaIII	CATG	1 cut(s)	172
PagI	TCATGA	1 cut(s)	168
PctI	GAATGC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
RsaI	GTAC	3 cut(s)	53, 67, 160
RsaNI	GTAC	3 cut(s)	52, 66, 159
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	81
ScaI	AGTACT	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	3 cut(s)	67, 149, 239
SfaNI	GCATC	2 cut(s)	48, 203
SpeI	ACTAGT	1 cut(s)	101
Sse9I	AATT	4 cut(s)	21, 36, 183, 199
SspMI	CTAG	2 cut(s)	102, 259
StyD4I	CCNGG	1 cut(s)	61
TaqI	TCGA	1 cut(s)	111
TasI	AATT	4 cut(s)	21, 36, 183, 199
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	1 cut(s)	80
TspRI	CASTG	1 cut(s)	121
XapI	RAATTY	1 cut(s)	21
XspI	CTAG	2 cut(s)	102, 259
ZrmI	AGTACT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.