Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018094

Physical Location & Seq

Genomic Coordinates Forward (+)

21901484 .. 21902120

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG115700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCAGTGTGTGGTATAGAGGAAAAAGATAGAGAGGCAGCAGAGAGAATGTTAAAGGTAGCTATCTGGTGTGTTCAGTATAGGTCCGAGTTGAGGCCCTTAATGAGTGTTGTGGTGAAAATGTTGGAAGGAGAATTTGAGATTCCTAGACCTTCAATTAATCCATTTCAGCACTTGATGCCAGACAATCCTATCATGGCAGCATATAGCACTAGTGCCTCCGACACGGATTCCTCTCAAACAATAACTGGATATAACATTGTTCGTGAGACTCCCATCATGAAAAAATACGAGATTGAAATAGCGTCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

104

Amino Acids

11.8

Weight (kDa)

4.96

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018094)

Species	Orthologous Gene IDs
malus_domestica	MD13G1250000.v1.1 MD16G1220200.v1.1
pyrus_communis	pycom16g18400
rosa_samantha	Rh4AG106600 Rh4AG106800 Rh4AG106900 Rh4CG115600 Rh4CG115700 Rh4CG115800 Rh4DG098400 Rh4DG098700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	308
AcsI	RAATTY	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	156, 299
AhlI	ACTAGT	1 cut(s)	212
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	38, 200
ApoI	RAATTY	1 cut(s)	134
AseI	ATTAAT	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	84, 96
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	50, 212
BccI	CCATC	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	263
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	2 cut(s)	147, 213
BisI	GCNGC	2 cut(s)	39, 201
BlsI	GCNGC	2 cut(s)	40, 202
Bme18I	GGWCC	1 cut(s)	84
BmgT120I	GGNCC	2 cut(s)	84, 96
BmsI	GCATC	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	2 cut(s)	50, 212
BshFI	GGCC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	97
BspANI	GGCC	1 cut(s)	97
BspHI	TCATGA	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	253
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	263
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	50, 212
BsuRI	GGCC	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
CciI	TCATGA	1 cut(s)	279
Cfr13I	GGNCC	2 cut(s)	84, 96
CseI	GACGC	1 cut(s)	294
CviAII	CATG	2 cut(s)	196, 280
CviJI	RGCY	2 cut(s)	62, 97
CviKI_1	RGCY	2 cut(s)	62, 97
Eco47I	GGWCC	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	96
FaeI	CATG	2 cut(s)	199, 283
FaiI	YATR	7 cut(s)	17, 81, 197, 205, 207, 255, 281
FatI	CATG	2 cut(s)	195, 279
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	2 cut(s)	39, 201
Fsp4HI	GCNGC	2 cut(s)	39, 201
FspBI	CTAG	2 cut(s)	147, 213
GluI	GCNGC	2 cut(s)	39, 201
HaeIII	GGCC	1 cut(s)	97
HgaI	GACGC	1 cut(s)	294
Hin1II	CATG	2 cut(s)	199, 283
HinfI	GANTC	3 cut(s)	142, 230, 271
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	2 cut(s)	88, 223
Hpy188III	TCNNGA	2 cut(s)	266, 280
Hpy8I	GTNNAC	1 cut(s)	309
HpyAV	CCTTC	2 cut(s)	122, 162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
Hsp92II	CATG	2 cut(s)	199, 283
LpnPI	CCDG	3 cut(s)	52, 195, 234
Lsp1109I	GCAGC	2 cut(s)	50, 212
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	2 cut(s)	147, 213
MluCI	AATT	2 cut(s)	134, 156
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	2 cut(s)	105, 246
MnlI	CCTC	5 cut(s)	13, 28, 87, 229, 244
MseI	TTAA	4 cut(s)	53, 101, 159, 313
MwoI	GCNNNNNNNGC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	199, 283
PagI	TCATGA	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	142, 230
PkrI	GCNGC	2 cut(s)	40, 202
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PshBI	ATTAAT	1 cut(s)	159
PspPI	GGNCC	2 cut(s)	84, 96
SaqAI	TTAA	4 cut(s)	53, 101, 159, 313
SatI	GCNGC	2 cut(s)	39, 201
Sau96I	GGNCC	2 cut(s)	84, 96
SchI	GAGTC	1 cut(s)	265
SetI	ASST	4 cut(s)	60, 64, 86, 154
SfaNI	GCATC	1 cut(s)	168
SinI	GGWCC	1 cut(s)	84
SpeI	ACTAGT	1 cut(s)	212
Sse9I	AATT	2 cut(s)	134, 156
SspMI	CTAG	2 cut(s)	147, 213
TasI	AATT	2 cut(s)	134, 156
TfiI	GAWTC	2 cut(s)	142, 230
Tru1I	TTAA	4 cut(s)	53, 101, 159, 313
Tru9I	TTAA	4 cut(s)	53, 101, 159, 313
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	2 cut(s)	38, 200
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	84
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	308
XspI	CTAG	2 cut(s)	147, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.