Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018094

Physical Location & Seq

Genomic Coordinates Forward (+)

21990104 .. 21991482

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG115800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTCGAGTGGAGTTGTGACTGTTGTAGCATTAGTAGTTGTCTGTGTGATGATTGCTATCATAGTTGTATACAGGAGATATATTCGGGAACGTAGCAGCTCTGATGATCCAGTCTCTCATGATCCAATCTTTTCGACACCCACAATGGACAATTTTCTAATTGATATAGAAAGAGAGAAGCCCATCAGAAGAAGGAACCTAGACGACAATCTTCCGGAGAGTCGAGACTGGTTTCCAAGGTGGGGATGGAAGAAGTTTGAAGCTGGAGAACTAGGAGAGCTAATGCTAGTTTGTGGCATAGAGGAGAAACATAGAGAGGCAGCGGAGAGAATGTTAAAGGTAGCTATCTGCTGTGTTCAGTATAGGCCGGAGTTGAGGCCTTTAATGAGTGCTGTGGTGAAAATGTTGGAAGGAGGAACTGAGATTCCTAGACCTTCAATTAACCCACTTCAGCACTCGTTGTCAGGCACTCCTGTCATGGCATCGTATAGCACTAGTGTCTTCGACACGGATTCCTCCCATACAACAAGTGGTGTTGGCACTAGTGTCACGGATTCCTCTCATACAACAAGTGGTGTTGGCACTAGTGTCTTCGACACGGATTCCTCTCATACAACAATCGGTGTTGAAGGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

212

Amino Acids

23.41

Weight (kDa)

5.37

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018094)

Species	Orthologous Gene IDs
malus_domestica	MD13G1250000.v1.1 MD16G1220200.v1.1
pyrus_communis	pycom16g18400
rosa_samantha	Rh4AG106600 Rh4AG106800 Rh4AG106900 Rh4CG115600 Rh4CG115700 Rh4CG115800 Rh4DG098400 Rh4DG098700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	69
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	2 cut(s)	101, 116
AcuI	CTGAAG	1 cut(s)	434
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	3 cut(s)	260, 438, 629
AhlI	ACTAGT	3 cut(s)	494, 542, 584
AloI	GAACNNNNNNTCC	2 cut(s)	409, 441
AluBI	AGCT	4 cut(s)	99, 263, 280, 344
AluI	AGCT	4 cut(s)	99, 263, 280, 344
Alw26I	GTCTC	2 cut(s)	118, 219
AlwI	GGATC	2 cut(s)	101, 116
Aor13HI	TCCGGA	1 cut(s)	214
AoxI	GGCC	2 cut(s)	365, 377
ApeKI	GCWGC	2 cut(s)	96, 320
AsuHPI	GGTGA	1 cut(s)	409
BbsI	GAAGAC	2 cut(s)	493, 583
BbvI	GCAGC	2 cut(s)	108, 332
BccI	CCATC	2 cut(s)	191, 240
BcoDI	GTCTC	2 cut(s)	118, 219
BcuI	ACTAGT	3 cut(s)	494, 542, 584
BfaI	CTAG	7 cut(s)	200, 272, 287, 429, 495, 543, 585
BisI	GCNGC	2 cut(s)	97, 321
BlsI	GCNGC	2 cut(s)	98, 322
BmiI	GGNNCC	1 cut(s)	197
BmsI	GCATC	1 cut(s)	491
BpiI	GAAGAC	2 cut(s)	493, 583
BpmI	CTGGAG	1 cut(s)	285
BsaBI	GATNNNNATC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	236
BsaWI	WCCGGW	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse1I	ACTGG	2 cut(s)	110, 233
Bse8I	GATNNNNATC	1 cut(s)	56
BseAI	TCCGGA	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	236
BseGI	GGATG	2 cut(s)	251, 638
BseJI	GATNNNNATC	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	2 cut(s)	110, 233
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	2 cut(s)	108, 332
BshFI	GGCC	2 cut(s)	367, 379
BsiSI	CCGG	2 cut(s)	215, 368
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmAI	GTCTC	2 cut(s)	118, 219
BsnI	GGCC	2 cut(s)	367, 379
Bsp13I	TCCGGA	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	106, 121
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	2 cut(s)	367, 379
BspCNI	CTCAG	1 cut(s)	412
BspEI	TCCGGA	1 cut(s)	214
BspHI	TCATGA	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	197
BspPI	GGATC	2 cut(s)	101, 116
BsrI	ACTGG	2 cut(s)	110, 233
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	2 cut(s)	106, 121
BssNAI	GTATAC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	236
Bst1107I	GTATAC	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	251, 638
BstKTI	GATC	2 cut(s)	109, 124
BstMAI	GTCTC	2 cut(s)	118, 219
BstMBI	GATC	2 cut(s)	106, 121
BstV1I	GCAGC	2 cut(s)	108, 332
BstV2I	GAAGAC	2 cut(s)	493, 583
BstZ17I	GTATAC	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	367, 379
BtsCI	GGATG	2 cut(s)	251, 638
CciI	TCATGA	1 cut(s)	118
CviAII	CATG	2 cut(s)	119, 478
CviJI	RGCY	7 cut(s)	99, 181, 263, 280, 344, 367, 379
CviKI_1	RGCY	7 cut(s)	99, 181, 263, 280, 344, 367, 379
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	2 cut(s)	108, 123
DpnII	GATC	2 cut(s)	106, 121
Eco130I	CCWWGG	1 cut(s)	236
Eco147I	AGGCCT	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	236
FaeI	CATG	2 cut(s)	122, 481
FatI	CATG	2 cut(s)	118, 477
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	97, 321
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	2 cut(s)	97, 321
FspBI	CTAG	7 cut(s)	200, 272, 287, 429, 495, 543, 585
GluI	GCNGC	2 cut(s)	97, 321
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	367, 379
HapII	CCGG	2 cut(s)	215, 368
Hin1II	CATG	2 cut(s)	122, 481
HinfI	GANTC	5 cut(s)	220, 424, 512, 554, 602
HpaII	CCGG	2 cut(s)	215, 368
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	103, 188
Hpy188III	TCNNGA	4 cut(s)	86, 119, 215, 224
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	4 cut(s)	186, 404, 444, 623
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	91
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	2 cut(s)	122, 481
Kpn2I	TCCGGA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	106, 121
LpnPI	CCDG	8 cut(s)	58, 123, 214, 228, 249, 381, 450, 486
Lsp1109I	GCAGC	2 cut(s)	108, 332
LweI	GCATC	1 cut(s)	491
MaeI	CTAG	7 cut(s)	200, 272, 287, 429, 495, 543, 585
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	2 cut(s)	16, 547
MalI	GATC	2 cut(s)	108, 123
MboI	GATC	2 cut(s)	106, 121
MboII	GAAGA	5 cut(s)	201, 203, 262, 493, 583
MluCI	AATT	3 cut(s)	151, 159, 438
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	7 cut(s)	295, 310, 369, 407, 526, 568, 616
MroI	TCCGGA	1 cut(s)	214
MseI	TTAA	3 cut(s)	335, 383, 441
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	2 cut(s)	215, 368
NdeII	GATC	2 cut(s)	106, 121
NlaIII	CATG	2 cut(s)	122, 481
NlaIV	GGNNCC	1 cut(s)	197
NmuCI	GTSAC	2 cut(s)	16, 547
PagI	TCATGA	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	379
PfeI	GAWTC	4 cut(s)	424, 512, 554, 602
PkrI	GCNGC	2 cut(s)	98, 322
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	335, 383, 441
SatI	GCNGC	2 cut(s)	97, 321
Sau3AI	GATC	2 cut(s)	106, 121
SchI	GAGTC	1 cut(s)	229
SetI	ASST	9 cut(s)	94, 101, 201, 242, 265, 282, 342, 346, 436
SfaNI	GCATC	1 cut(s)	491
SpeI	ACTAGT	3 cut(s)	494, 542, 584
Sse9I	AATT	3 cut(s)	151, 159, 438
SseBI	AGGCCT	1 cut(s)	379
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	7 cut(s)	200, 272, 287, 429, 495, 543, 585
StuI	AGGCCT	1 cut(s)	379
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	5 cut(s)	5, 134, 223, 504, 594
TasI	AATT	3 cut(s)	151, 159, 438
TfiI	GAWTC	4 cut(s)	424, 512, 554, 602
Tru1I	TTAA	3 cut(s)	335, 383, 441
Tru9I	TTAA	3 cut(s)	335, 383, 441
TseFI	GTSAC	2 cut(s)	16, 547
TseI	GCWGC	2 cut(s)	96, 320
Tsp45I	GTSAC	2 cut(s)	16, 547
TspGWI	ACGGA	3 cut(s)	524, 566, 614
XcmI	CCANNNNNNNNNTGG	2 cut(s)	243, 527
XmiI	GTMKAC	1 cut(s)	69
XspI	CTAG	7 cut(s)	200, 272, 287, 429, 495, 543, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.